Wall clock time and date at job start Sat Apr 11 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.46864 * 2 1 4 4 C 1.53009 * 109.46864 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.47096 * 180.02562 * 4 3 2 6 6 C 1.38358 * 119.85444 * 89.99556 * 5 4 3 7 7 C 1.37956 * 120.14281 * 180.02562 * 6 5 4 8 8 C 1.39575 * 119.85414 * 359.97438 * 7 6 5 9 9 C 1.47848 * 120.14556 * 179.72762 * 8 7 6 10 10 O 1.21555 * 119.99679 * 321.33271 * 9 8 7 11 11 N 1.34773 * 120.00201 * 141.33744 * 9 8 7 12 12 C 1.46501 * 119.99941 * 4.69582 * 11 9 8 13 13 C 1.46503 * 119.99950 * 184.69951 * 11 9 8 14 14 C 1.52994 * 109.47182 * 88.37078 * 13 11 9 15 15 H 1.08991 * 112.74320 * 43.55475 * 14 13 11 16 16 C 1.53503 * 113.46765 * 272.81575 * 14 13 11 17 17 C 1.53619 * 83.30632 * 219.17179 * 16 14 13 18 18 N 1.47064 * 113.46611 * 174.30780 * 14 13 11 19 19 C 1.36941 * 136.05927 * 321.85549 * 18 14 13 20 20 H 1.08005 * 119.99745 * 6.11976 * 19 18 14 21 21 C 1.38808 * 120.00371 * 186.11147 * 19 18 14 22 22 N 1.31618 * 120.00221 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47631 * 90.00046 * 23 21 19 25 25 H 1.48503 * 109.47165 * 210.00051 * 23 21 19 26 26 H 1.48501 * 109.47207 * 329.99733 * 23 21 19 27 27 C 1.39575 * 119.71220 * 359.97438 * 8 7 6 28 28 C 1.37959 * 119.85214 * 0.02562 * 27 8 7 29 29 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46924 * 299.99978 * 1 2 3 31 31 H 1.09008 * 109.46858 * 60.00198 * 1 2 3 32 32 H 1.08996 * 109.46924 * 240.00022 * 2 1 3 33 33 H 1.08994 * 109.46731 * 120.00302 * 2 1 3 34 34 H 1.08996 * 109.47332 * 60.00272 * 3 2 1 35 35 H 1.08994 * 109.47693 * 299.99713 * 3 2 1 36 36 H 1.08996 * 109.46924 * 60.00022 * 4 3 2 37 37 H 1.09002 * 109.46467 * 299.99719 * 4 3 2 38 38 H 1.07999 * 119.92713 * 0.02562 * 6 5 4 39 39 H 1.08004 * 120.07377 * 180.02562 * 7 6 5 40 40 H 1.08999 * 109.46994 * 85.73403 * 12 11 9 41 41 H 1.09002 * 109.46696 * 205.72775 * 12 11 9 42 42 H 1.08995 * 109.47596 * 325.73003 * 12 11 9 43 43 H 1.08995 * 109.47122 * 208.37597 * 13 11 9 44 44 H 1.09007 * 109.46716 * 328.36846 * 13 11 9 45 45 H 1.09001 * 114.20380 * 332.73558 * 16 14 13 46 46 H 1.08997 * 114.20638 * 105.56333 * 16 14 13 47 47 H 1.08994 * 113.40749 * 271.24073 * 17 16 14 48 48 H 1.09002 * 113.55615 * 140.82421 * 17 16 14 49 49 H 0.96994 * 120.00498 * 179.97438 * 22 21 19 50 50 H 1.07998 * 120.07759 * 179.97438 * 27 8 7 51 51 H 1.08001 * 119.92760 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3024 3.5120 1.2002 7 6 4.7618 4.8128 1.2078 8 6 4.9950 5.4743 0.0011 9 6 5.4815 6.8704 0.0016 10 8 5.0587 7.6610 0.8224 11 7 6.3937 7.2665 -0.9080 12 6 6.8268 6.3442 -1.9607 13 6 6.9524 8.6193 -0.8440 14 6 8.1828 8.6205 0.0653 15 1 8.8373 7.7669 -0.1103 16 6 7.8475 8.8389 1.5473 17 6 9.1239 9.6934 1.5247 18 7 8.8929 9.9082 0.0882 19 6 9.2033 10.8793 -0.8260 20 1 8.8119 10.8200 -1.8308 21 6 10.0210 11.9401 -0.4611 22 7 10.4984 12.0122 0.7633 23 14 10.4439 13.2651 -1.7080 24 1 9.4300 14.3481 -1.6426 25 1 11.7852 13.8237 -1.4011 26 1 10.4527 12.6770 -3.0716 27 6 4.7619 4.8138 -1.2062 28 6 4.3026 3.5129 -1.1997 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.9330 0.9288 -0.8908 37 1 3.9337 0.9285 0.8892 38 1 4.1220 2.9988 2.1333 39 1 4.9413 5.3180 2.1454 40 1 6.1348 6.4013 -2.8009 41 1 7.8274 6.6185 -2.2949 42 1 6.8404 5.3270 -1.5696 43 1 7.2398 8.9415 -1.8448 44 1 6.2038 9.3029 -0.4433 45 1 6.9329 9.4062 1.7197 46 1 7.9215 7.9400 2.1594 47 1 10.0291 9.1254 1.7386 48 1 9.0483 10.6050 2.1175 49 1 11.0700 12.7532 1.0181 50 1 4.9400 5.3201 -2.1434 51 1 4.1214 3.0008 -2.1332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085708482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:40:47 Heat of formation + Delta-G solvation = 39.114601 kcal Electronic energy + Delta-G solvation = -27726.569631 eV Core-core repulsion = 24013.527090 eV Total energy + Delta-G solvation = -3713.042541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.43818 -38.92028 -37.75136 -36.04482 -35.29255 -32.72285 -32.13126 -31.21767 -29.44886 -28.09145 -27.82156 -26.52272 -24.74580 -23.34851 -22.92155 -22.49719 -21.64495 -21.17412 -19.53548 -19.09413 -17.28584 -16.67253 -16.42772 -15.96729 -15.76720 -15.47526 -15.03149 -14.56610 -14.47928 -14.44514 -13.96670 -13.79318 -13.61791 -13.54840 -13.22374 -13.01064 -12.90020 -12.70391 -12.56021 -12.11348 -11.93080 -11.88970 -11.70498 -11.52884 -11.41620 -11.16469 -11.05999 -11.02334 -10.90545 -10.83721 -10.73371 -10.36019 -9.83085 -9.75446 -9.66133 -9.35699 -9.12015 -8.84200 -8.75284 -8.25006 -6.82071 -5.73175 -3.05180 0.82235 1.20274 2.85776 3.16691 3.40958 3.45067 3.47389 3.66368 4.29795 4.45500 4.47379 4.55263 4.64865 4.66290 4.77360 4.84032 4.94960 5.12208 5.20160 5.26202 5.26912 5.28359 5.31444 5.37870 5.40974 5.50588 5.51290 5.57515 5.62801 5.68782 5.72989 5.75087 5.80910 5.85993 5.94034 5.95224 6.04291 6.10537 6.12988 6.26653 6.35629 6.46272 6.58342 6.69356 6.73147 6.83403 6.88961 7.30863 7.51099 7.60801 7.63364 8.02135 8.36391 9.07082 9.74228 10.70814 11.45010 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.034319 B = 0.002006 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.689958 B =13953.293732 C =14338.453060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.083 4.083 5 C -0.066 4.066 6 C -0.125 4.125 7 C -0.063 4.063 8 C -0.126 4.126 9 C 0.554 3.446 10 O -0.526 6.526 11 N -0.605 5.605 12 C 0.073 3.927 13 C 0.115 3.885 14 C 0.130 3.870 15 H 0.040 0.960 16 C -0.157 4.157 17 C 0.156 3.844 18 N -0.601 5.601 19 C -0.218 4.218 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.918 5.918 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.282 1.282 27 C -0.093 4.093 28 C -0.127 4.127 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.024 0.976 48 H 0.064 0.936 49 H 0.253 0.747 50 H 0.135 0.865 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 -25.293 -3.452 30.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.120 4.120 5 C -0.066 4.066 6 C -0.143 4.143 7 C -0.081 4.081 8 C -0.129 4.129 9 C 0.341 3.659 10 O -0.403 6.403 11 N -0.338 5.338 12 C -0.071 4.071 13 C -0.008 4.008 14 C 0.022 3.978 15 H 0.057 0.943 16 C -0.195 4.195 17 C 0.031 3.969 18 N -0.327 5.327 19 C -0.346 4.346 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.564 5.564 23 Si 0.741 3.259 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.112 4.112 28 C -0.145 4.145 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.067 0.933 47 H 0.042 0.958 48 H 0.082 0.918 49 H 0.063 0.937 50 H 0.153 0.847 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.851 -24.514 -3.153 29.362 hybrid contribution 0.568 0.675 -0.810 1.198 sum -15.282 -23.838 -3.963 28.592 Atomic orbital electron populations 1.21782 0.95845 1.01565 1.01942 1.21547 0.95941 0.96739 1.02030 1.21614 0.94157 0.96830 1.02672 1.20671 0.95780 0.92485 1.03076 1.20053 0.97264 0.96113 0.93200 1.20981 1.00831 0.94706 0.97755 1.21215 0.95410 0.94013 0.97501 1.20001 1.03929 0.94502 0.94472 1.18333 0.79222 0.87235 0.81069 1.90794 1.57201 1.54152 1.38152 1.47785 1.41534 1.15185 1.29260 1.22122 1.00689 0.94030 0.90224 1.21937 0.96675 0.80948 1.01204 1.22430 0.91419 0.90433 0.93510 0.94313 1.23668 1.00382 0.99482 0.95976 1.21992 0.92082 0.96489 0.86377 1.45637 1.64185 1.16250 1.06591 1.18873 1.24555 0.99008 0.92141 0.90278 1.24815 0.99461 0.99188 0.96920 1.69850 1.37371 1.32155 1.17063 0.86149 0.77606 0.81875 0.80287 1.21528 1.21669 1.20721 1.21662 0.97159 0.94634 0.97722 1.20952 1.01010 0.94836 0.97676 0.92816 0.92692 0.92729 0.92013 0.91987 0.91681 0.91737 0.90858 0.90848 0.85616 0.85042 0.92630 0.90642 0.90769 0.90714 0.89491 0.89966 0.93310 0.95833 0.91765 0.93672 0.84717 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.13 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.12 -0.68 5.20 -26.73 -0.14 -0.82 16 4 C -0.08 -0.50 5.34 -27.88 -0.15 -0.65 16 5 C -0.07 -0.56 5.14 -104.53 -0.54 -1.09 16 6 C -0.12 -1.18 9.68 -39.64 -0.38 -1.56 16 7 C -0.06 -0.75 9.63 -39.19 -0.38 -1.12 16 8 C -0.13 -1.62 5.24 -104.97 -0.55 -2.18 16 9 C 0.55 8.98 7.35 -12.33 -0.09 8.89 16 10 O -0.53 -10.44 15.92 5.32 0.08 -10.36 16 11 N -0.60 -9.29 2.87 -182.69 -0.53 -9.81 16 12 C 0.07 0.80 8.86 59.85 0.53 1.33 16 13 C 0.12 2.16 5.35 -4.04 -0.02 2.14 16 14 C 0.13 2.79 4.31 -72.38 -0.31 2.48 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.16 -3.36 7.49 -26.15 -0.20 -3.55 16 17 C 0.16 3.92 7.27 -8.43 -0.06 3.86 16 18 N -0.60 -15.79 3.65 -176.76 -0.64 -16.44 16 19 C -0.22 -6.15 10.55 -15.06 -0.16 -6.31 16 20 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.92 -27.91 11.67 55.49 0.65 -27.26 16 23 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 C -0.09 -0.95 7.57 -39.19 -0.30 -1.24 16 28 C -0.13 -1.08 9.68 -39.64 -0.38 -1.46 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 38 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.60 8.05 -52.48 -0.42 1.18 16 40 H 0.06 0.50 6.90 -51.93 -0.36 0.14 16 41 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 42 H 0.07 0.73 5.80 -51.93 -0.30 0.43 16 43 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 44 H 0.09 1.81 7.13 -51.92 -0.37 1.44 16 45 H 0.08 1.85 7.90 -51.93 -0.41 1.44 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 1.76 7.40 -51.93 -0.38 1.38 16 49 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.14 1.17 5.27 -52.49 -0.28 0.90 16 51 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -33.47 409.37 -11.12 -44.59 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.82 Total: -1.45 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.01 Total: -2.78 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.52 Total: -53.51 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.47 -11.12 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085708482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.707 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds