Wall clock time and date at job start Sat Apr 11 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47325 * 180.02562 * 3 2 1 5 5 C 1.37982 * 120.07212 * 262.06288 * 4 3 2 6 6 C 1.38336 * 120.13891 * 180.25814 * 5 4 3 7 7 C 1.38375 * 120.29621 * 359.73260 * 6 5 4 8 8 C 1.37936 * 120.14777 * 359.97438 * 7 6 5 9 9 C 1.39553 * 120.07232 * 81.78250 * 4 3 2 10 10 C 1.47845 * 120.14469 * 0.02562 * 9 4 3 11 11 O 1.21547 * 120.00296 * 354.09732 * 10 9 4 12 12 N 1.34776 * 119.99768 * 174.09217 * 10 9 4 13 13 C 1.46503 * 119.99914 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47449 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.91615 * 51.09541 * 14 13 12 16 16 C 1.54908 * 111.00324 * 287.19757 * 14 13 12 17 17 N 1.47422 * 104.83535 * 204.91763 * 16 14 13 18 18 C 1.36931 * 125.65163 * 204.16675 * 17 16 14 19 19 H 1.08005 * 119.99717 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99767 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47178 * 90.00323 * 22 20 18 24 24 H 1.48507 * 109.46795 * 210.00013 * 22 20 18 25 25 H 1.48500 * 109.47552 * 330.00046 * 22 20 18 26 26 C 1.47029 * 108.70096 * 24.12266 * 17 16 14 27 27 C 1.54325 * 107.27227 * 358.94596 * 26 17 16 28 28 H 1.08999 * 110.71718 * 96.34318 * 27 26 17 29 29 C 1.52996 * 110.71834 * 219.44585 * 27 26 17 30 30 H 1.08994 * 109.47225 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47021 * 299.99747 * 1 2 3 32 32 H 1.08997 * 109.47564 * 59.99833 * 1 2 3 33 33 H 1.08998 * 109.46812 * 239.99954 * 2 1 3 34 34 H 1.09001 * 109.47124 * 120.00040 * 2 1 3 35 35 H 1.09004 * 109.46861 * 59.99607 * 3 2 1 36 36 H 1.08997 * 109.46942 * 300.00548 * 3 2 1 37 37 H 1.07995 * 119.92701 * 359.97438 * 5 4 3 38 38 H 1.08003 * 119.84952 * 179.71936 * 6 5 4 39 39 H 1.08002 * 119.92918 * 180.02562 * 7 6 5 40 40 H 1.07994 * 120.08051 * 180.02562 * 8 7 6 41 41 H 0.97000 * 120.00337 * 0.02562 * 12 10 9 42 42 H 1.09002 * 109.47307 * 60.00222 * 13 12 10 43 43 H 1.09003 * 109.46995 * 300.00372 * 13 12 10 44 44 H 1.09004 * 110.37071 * 86.07415 * 16 14 13 45 45 H 1.09003 * 110.36430 * 323.75259 * 16 14 13 46 46 H 0.96997 * 119.99663 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.88166 * 239.52684 * 26 17 16 48 48 H 1.08991 * 110.00770 * 118.43568 * 26 17 16 49 49 H 1.08997 * 109.47448 * 58.54790 * 29 27 26 50 50 H 1.08995 * 109.46750 * 178.54614 * 29 27 26 51 51 H 1.09000 * 109.47059 * 298.54197 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2390 1.6072 1.1818 6 6 5.6223 1.6128 1.1820 7 6 6.3213 1.4479 -0.0008 8 6 5.6418 1.2763 -1.1888 9 6 4.2459 1.2701 -1.1962 10 6 3.5110 1.0874 -2.4660 11 8 2.3003 0.9797 -2.4575 12 7 4.1835 1.0405 -3.6331 13 6 3.4552 0.8600 -4.8914 14 6 4.4468 0.8411 -6.0564 15 1 5.2526 0.1311 -5.8701 16 6 5.0082 2.2586 -6.3308 17 7 5.4129 2.2365 -7.7482 18 6 6.3546 3.0483 -8.3221 19 1 6.8710 3.7836 -7.7229 20 6 6.6454 2.9261 -9.6739 21 7 6.0156 2.0303 -10.4042 22 14 7.9296 4.0340 -10.4568 23 1 9.2632 3.3872 -10.3656 24 1 7.5852 4.2593 -11.8837 25 1 7.9611 5.3361 -9.7436 26 6 4.6386 1.1978 -8.4434 27 6 3.7269 0.5268 -7.3945 28 1 2.7300 0.9673 -7.4119 29 6 3.6536 -0.9834 -7.6279 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.6994 1.7366 2.1082 38 1 6.1592 1.7466 2.1096 39 1 7.4013 1.4528 0.0063 40 1 6.1884 1.1473 -2.1113 41 1 5.1497 1.1261 -3.6399 42 1 2.7522 1.6822 -5.0255 43 1 2.9099 -0.0834 -4.8635 44 1 5.8701 2.4553 -5.6931 45 1 4.2358 3.0105 -6.1685 46 1 6.2186 1.9452 -11.3488 47 1 5.3136 0.4587 -8.8749 48 1 4.0314 1.6481 -9.2285 49 1 4.6561 -1.4081 -7.5769 50 1 3.0265 -1.4394 -6.8619 51 1 3.2258 -1.1787 -8.6113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092809065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:25 Heat of formation + Delta-G solvation = -4.656979 kcal Electronic energy + Delta-G solvation = -28379.561618 eV Core-core repulsion = 24664.620999 eV Total energy + Delta-G solvation = -3714.940619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.55912 -38.68243 -37.80707 -35.48526 -34.34334 -32.98353 -31.54305 -31.23401 -30.73395 -29.12894 -26.69461 -25.96071 -25.16107 -23.84843 -22.78363 -22.20300 -21.02027 -20.59594 -19.97766 -19.24988 -17.84384 -16.77907 -16.23744 -16.01190 -15.44667 -15.36722 -15.14635 -14.67400 -14.32146 -14.20244 -13.94110 -13.82412 -13.57434 -13.33834 -13.07714 -12.88945 -12.61167 -12.52733 -12.22179 -12.08001 -11.82089 -11.74520 -11.66843 -11.39977 -11.22510 -11.20404 -11.00761 -10.82865 -10.77412 -10.59684 -10.15618 -10.00432 -9.93118 -9.87553 -9.61548 -9.46483 -9.23457 -9.00863 -8.79383 -8.60898 -6.83649 -5.71866 -3.05352 0.69109 1.12303 2.83001 3.21624 3.38921 3.44096 3.46086 3.68004 4.48281 4.52339 4.57678 4.60161 4.77890 5.01058 5.08763 5.10926 5.17107 5.19048 5.24292 5.32410 5.33969 5.51652 5.53044 5.55911 5.64557 5.73527 5.76070 5.80971 5.86506 5.87462 6.01601 6.04013 6.08958 6.10342 6.16082 6.18580 6.19931 6.27879 6.30489 6.46731 6.48880 6.53073 6.56825 6.62520 6.66829 6.76347 6.93891 7.55417 7.56397 7.63921 7.83426 8.25127 8.25579 9.21565 9.81878 10.48111 11.39720 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.002659 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.626457 B =10528.745327 C =11836.788350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.087 4.087 4 C -0.021 4.021 5 C -0.131 4.131 6 C -0.094 4.094 7 C -0.134 4.134 8 C -0.083 4.083 9 C -0.134 4.134 10 C 0.552 3.448 11 O -0.530 6.530 12 N -0.720 5.720 13 C 0.134 3.866 14 C -0.113 4.113 15 H 0.080 0.920 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.184 3.816 27 C -0.110 4.110 28 H 0.067 0.933 29 C -0.134 4.134 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.400 0.600 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.035 0.965 45 H 0.019 0.981 46 H 0.252 0.748 47 H 0.049 0.951 48 H 0.041 0.959 49 H 0.053 0.947 50 H 0.044 0.956 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -4.916 22.585 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.124 4.124 4 C -0.022 4.022 5 C -0.149 4.149 6 C -0.112 4.112 7 C -0.152 4.152 8 C -0.101 4.101 9 C -0.137 4.137 10 C 0.340 3.660 11 O -0.408 6.408 12 N -0.371 5.371 13 C 0.011 3.989 14 C -0.133 4.133 15 H 0.098 0.902 16 C 0.016 3.984 17 N -0.332 5.332 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.059 3.941 27 C -0.130 4.130 28 H 0.086 0.914 29 C -0.192 4.192 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.235 0.765 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.037 0.963 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.391 -4.951 22.316 23.485 hybrid contribution 1.379 0.661 -0.510 1.613 sum -4.011 -4.289 21.806 22.583 Atomic orbital electron populations 1.21706 0.95864 1.01204 1.01606 1.21347 0.95676 0.95668 1.01648 1.20863 0.89551 0.98533 1.03426 1.20067 0.96597 0.94037 0.91496 1.21058 0.94227 1.02084 0.97549 1.21334 0.94271 0.97359 0.98259 1.21092 1.00248 1.01488 0.92385 1.21366 0.93043 0.97001 0.98715 1.19872 0.93573 1.06619 0.93682 1.18247 0.87224 0.77010 0.83532 1.90720 1.13435 1.49679 1.87009 1.46037 1.11092 1.73607 1.06392 1.21407 0.94570 1.01670 0.81293 1.22685 0.97447 0.99612 0.93539 0.90206 1.21585 0.96342 0.92768 0.87753 1.44460 1.44831 1.40840 1.03100 1.19048 1.12548 1.11842 0.92237 0.90525 1.24802 1.00041 0.99268 0.96361 1.69964 1.44112 1.36360 1.06450 0.86129 0.81073 0.79957 0.78658 1.21634 1.21670 1.20724 1.21214 0.91743 0.90354 0.90805 1.22433 0.99464 0.95840 0.95258 0.91408 1.21688 1.01270 0.95363 1.00829 0.93159 0.93383 0.92264 0.91001 0.93275 0.92172 0.88129 0.85578 0.85731 0.85454 0.85475 0.76516 0.91284 0.91537 0.94711 0.96327 0.93765 0.93331 0.94049 0.92807 0.93687 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.11 -1.14 5.44 -26.73 -0.15 -1.29 16 3 C -0.09 -0.95 4.60 -27.88 -0.13 -1.08 16 4 C -0.02 -0.23 5.17 -104.23 -0.54 -0.77 16 5 C -0.13 -1.18 9.66 -39.64 -0.38 -1.56 16 6 C -0.09 -0.76 10.04 -39.49 -0.40 -1.15 16 7 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 8 C -0.08 -0.81 9.53 -39.18 -0.37 -1.19 16 9 C -0.13 -1.58 5.87 -104.97 -0.62 -2.20 16 10 C 0.55 7.48 7.64 -12.33 -0.09 7.38 16 11 O -0.53 -8.24 11.59 5.32 0.06 -8.18 16 12 N -0.72 -9.21 5.45 -61.25 -0.33 -9.55 16 13 C 0.13 1.91 5.13 -4.04 -0.02 1.89 16 14 C -0.11 -1.84 2.50 -88.47 -0.22 -2.06 16 15 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 16 C 0.14 2.82 6.65 -2.53 -0.02 2.80 16 17 N -0.61 -15.24 3.39 -170.07 -0.58 -15.81 16 18 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 22 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.18 4.36 4.97 -3.06 -0.02 4.35 16 27 C -0.11 -1.97 3.01 -88.79 -0.27 -2.24 16 28 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 29 C -0.13 -2.07 9.13 37.16 0.34 -1.73 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.93 6.57 -51.93 -0.34 0.59 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.55 8.03 -51.93 -0.42 0.13 16 36 H 0.10 1.32 5.97 -51.93 -0.31 1.01 16 37 H 0.13 0.88 8.05 -52.49 -0.42 0.46 16 38 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 1.06 6.45 -52.49 -0.34 0.72 16 41 H 0.40 4.47 6.54 -40.82 -0.27 4.21 16 42 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 46 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.05 1.28 7.06 -51.93 -0.37 0.91 16 48 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 49 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 50 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -31.29 400.30 -11.13 -42.42 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.71 Total: 2.70 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.16 Total: -8.25 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.34 Total: -51.71 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.06 Total: -8.18 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.29 -11.13 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092809065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.761 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds