Wall clock time and date at job start Sat Apr 11 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47147 * 2 1 4 4 H 1.08994 * 109.46685 * 304.99946 * 3 2 1 5 5 N 1.46496 * 109.47067 * 64.99951 * 3 2 1 6 6 C 1.34779 * 120.00091 * 275.00164 * 5 3 2 7 7 O 1.21586 * 119.99858 * 354.67303 * 6 5 3 8 8 N 1.34776 * 120.00085 * 174.95214 * 6 5 3 9 9 C 1.46921 * 120.63057 * 184.46547 * 8 6 5 10 10 C 1.53630 * 108.54249 * 126.36673 * 9 8 6 11 11 C 1.53035 * 109.24134 * 54.85542 * 10 9 8 12 12 C 1.53004 * 109.45717 * 178.48760 * 11 10 9 13 13 C 1.50696 * 109.47607 * 295.06732 * 12 11 10 14 14 H 1.08011 * 119.99630 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00441 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99834 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00092 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47286 * 60.00577 * 17 15 13 19 19 H 1.48507 * 109.47112 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47245 * 300.00144 * 17 15 13 21 21 C 1.53039 * 109.54027 * 298.50955 * 11 10 9 22 22 C 1.46930 * 120.62820 * 4.73992 * 8 6 5 23 23 C 1.50705 * 109.46998 * 184.99969 * 3 2 1 24 24 C 1.38231 * 120.00119 * 279.72638 * 23 3 2 25 25 C 1.38233 * 120.00232 * 179.81181 * 24 23 3 26 26 C 1.38233 * 119.99539 * 0.39870 * 25 24 23 27 27 C 1.38238 * 120.00486 * 359.85346 * 26 25 24 28 28 C 1.38233 * 119.99630 * 359.95694 * 27 26 25 29 29 H 1.08994 * 109.47193 * 60.00079 * 1 2 3 30 30 H 1.09000 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46748 * 299.99474 * 1 2 3 32 32 H 1.08998 * 109.47166 * 239.99675 * 2 1 3 33 33 H 1.09007 * 109.46837 * 119.99911 * 2 1 3 34 34 H 0.97001 * 119.99821 * 95.00209 * 5 3 2 35 35 H 1.09003 * 109.58576 * 246.19827 * 9 8 6 36 36 H 1.08997 * 109.59097 * 6.62719 * 9 8 6 37 37 H 1.09000 * 109.63554 * 294.86168 * 10 9 8 38 38 H 1.09004 * 109.45444 * 174.74155 * 10 9 8 39 39 H 1.09005 * 109.45041 * 58.52753 * 11 10 9 40 40 H 1.08998 * 109.46825 * 55.07096 * 12 11 10 41 41 H 1.09002 * 109.46897 * 175.07132 * 12 11 10 42 42 H 0.97003 * 120.00120 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.49507 * 301.41339 * 21 11 10 44 44 H 1.08998 * 109.52204 * 181.33132 * 21 11 10 45 45 H 1.08999 * 109.59062 * 353.37781 * 22 8 6 46 46 H 1.09002 * 109.58368 * 113.65874 * 22 8 6 47 47 H 1.08007 * 119.99656 * 359.97438 * 24 23 3 48 48 H 1.08003 * 120.00061 * 180.22881 * 25 24 23 49 49 H 1.08004 * 119.99989 * 179.83435 * 26 25 24 50 50 H 1.07990 * 120.00127 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.00060 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4351 2.6644 1.3669 7 8 -0.3041 2.7180 0.4031 8 7 0.0395 3.1769 2.5490 9 6 -1.3194 3.7097 2.7167 10 6 -1.9673 3.0231 3.9286 11 6 -1.0662 3.2040 5.1522 12 6 -1.7250 2.5544 6.3709 13 6 -3.0006 3.2852 6.7017 14 1 -3.3108 4.1286 6.1024 15 6 -3.7723 2.8768 7.7687 16 7 -3.3949 1.8496 8.4981 17 14 -5.3540 3.7823 8.1783 18 1 -6.2792 3.7120 7.0188 19 1 -5.9932 3.1518 9.3612 20 1 -5.0467 5.2033 8.4810 21 6 0.2891 2.5426 4.8921 22 6 0.9609 3.2187 3.6927 23 6 3.5420 1.4443 -0.1238 24 6 4.3275 1.2087 0.9889 25 6 5.7051 1.2064 0.8746 26 6 6.2972 1.4480 -0.3509 27 6 5.5118 1.6888 -1.4627 28 6 4.1342 1.6871 -1.3491 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 2.2720 2.1232 1.9977 35 1 -1.2717 4.7856 2.8850 36 1 -1.9058 3.5035 1.8214 37 1 -2.0931 1.9600 3.7234 38 1 -2.9406 3.4735 4.1237 39 1 -0.9209 4.2676 5.3419 40 1 -1.9508 1.5114 6.1489 41 1 -1.0456 2.6060 7.2217 42 1 -3.9376 1.5624 9.2491 43 1 0.1422 1.4841 4.6778 44 1 0.9224 2.6512 5.7726 45 1 1.8795 2.6884 3.4416 46 1 1.1927 4.2553 3.9374 47 1 3.8648 1.0237 1.9472 48 1 6.3188 1.0187 1.7433 49 1 7.3736 1.4489 -0.4398 50 1 5.9745 1.8779 -2.4200 51 1 3.5205 1.8757 -2.2176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564898708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:23 Heat of formation + Delta-G solvation = -19.804950 kcal Electronic energy + Delta-G solvation = -28676.445233 eV Core-core repulsion = 24960.847749 eV Total energy + Delta-G solvation = -3715.597484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.67084 -39.48333 -37.63407 -35.82184 -34.07776 -32.57719 -31.77585 -31.27803 -31.17107 -30.44226 -27.99068 -26.18406 -24.57389 -23.07955 -22.80430 -22.38417 -21.95751 -20.80369 -19.89725 -19.24461 -18.09985 -17.00888 -16.45051 -16.22058 -15.67707 -15.48789 -15.12418 -14.63264 -14.50814 -14.21099 -13.96007 -13.81594 -13.68987 -13.54218 -13.16760 -13.12978 -12.93397 -12.84276 -12.33208 -12.13604 -12.07880 -11.86539 -11.53064 -11.38782 -11.19551 -11.07977 -10.99304 -10.87524 -10.75193 -10.67355 -10.41000 -10.17232 -9.88550 -9.62685 -9.27407 -9.25122 -9.18621 -8.98200 -8.94358 -8.34949 -8.21848 -5.99768 -4.01550 0.98822 1.07060 2.76050 3.33199 3.33692 3.37953 3.40205 3.47608 3.94601 4.29585 4.45850 4.54803 4.66881 4.79381 4.97377 5.01265 5.04598 5.16022 5.20725 5.32042 5.35456 5.35748 5.38847 5.55988 5.61285 5.64639 5.66997 5.71481 5.79617 5.82694 5.96981 5.99411 6.10294 6.11058 6.12710 6.18873 6.21137 6.34750 6.38370 6.46020 6.51352 6.56703 6.64711 6.66872 6.98408 7.02165 7.10556 7.15588 7.65863 7.80762 7.99723 8.04811 8.42543 8.72794 9.04638 9.62298 11.11470 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.002403 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.810410 B =11648.019956 C =12124.289627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.203 3.797 4 H 0.097 0.903 5 N -0.745 5.745 6 C 0.710 3.290 7 O -0.591 6.591 8 N -0.622 5.622 9 C 0.127 3.873 10 C -0.118 4.118 11 C -0.080 4.080 12 C 0.028 3.972 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.129 4.129 22 C 0.114 3.886 23 C -0.087 4.087 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.122 4.122 27 C -0.117 4.117 28 C -0.108 4.108 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.394 0.606 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.123 0.877 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.977 -1.654 -17.865 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.097 3.903 4 H 0.115 0.885 5 N -0.403 5.403 6 C 0.412 3.588 7 O -0.470 6.470 8 N -0.359 5.359 9 C 0.005 3.995 10 C -0.156 4.156 11 C -0.098 4.098 12 C -0.008 4.008 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.168 4.168 22 C -0.010 4.010 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.135 4.135 28 C -0.126 4.126 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.141 0.859 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.351 -1.725 -18.406 26.048 hybrid contribution -0.465 0.382 0.888 1.073 sum 17.885 -1.344 -17.519 25.072 Atomic orbital electron populations 1.21763 0.94346 1.00677 1.03332 1.21953 0.97307 0.95198 1.02165 1.19691 0.89184 0.93681 0.87704 0.88497 1.45420 1.16461 1.61689 1.16758 1.15750 0.81755 0.77964 0.83368 1.90887 1.54632 1.64454 1.37053 1.47359 1.14844 1.64125 1.09603 1.21747 0.80748 0.97065 0.99980 1.21986 0.99836 1.00587 0.93182 1.21173 0.92396 0.99472 0.96779 1.19113 0.94973 0.95770 0.90992 1.21203 1.06701 1.14668 1.12857 0.92627 1.25017 0.97947 0.95133 0.96380 1.69954 1.38732 1.26003 1.18886 0.86701 0.83784 0.79949 0.77819 1.20242 1.21397 1.20300 1.22026 0.98457 1.00098 0.96185 1.21675 0.91460 1.00882 0.86959 1.20003 0.94906 0.99836 0.94067 1.20960 0.93825 1.00185 0.98226 1.21156 0.94692 0.99747 0.97793 1.21185 0.99902 0.99949 0.92988 1.21149 0.93669 0.99955 0.98772 1.21025 0.94951 0.99637 0.97025 0.92181 0.93517 0.92124 0.91269 0.91834 0.76860 0.92165 0.89580 0.92408 0.89834 0.92370 0.96692 0.96696 0.93020 0.92022 0.91207 0.91797 0.91536 0.86165 0.85874 0.86090 0.85935 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.58 37.16 0.32 -1.49 16 2 C -0.13 -1.32 5.59 -26.73 -0.15 -1.47 16 3 C 0.20 2.15 2.46 -69.08 -0.17 1.98 16 4 H 0.10 1.17 7.37 -51.93 -0.38 0.78 16 5 N -0.74 -8.69 4.89 -59.81 -0.29 -8.98 16 6 C 0.71 10.62 6.66 -86.92 -0.58 10.04 16 7 O -0.59 -10.52 13.35 5.29 0.07 -10.45 16 8 N -0.62 -9.13 2.97 -178.23 -0.53 -9.66 16 9 C 0.13 2.01 6.45 -3.49 -0.02 1.99 16 10 C -0.12 -2.13 5.21 -26.39 -0.14 -2.27 16 11 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 12 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 13 C -0.52 -14.02 8.39 -34.44 -0.29 -14.30 16 14 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.13 -1.99 5.36 -26.61 -0.14 -2.13 16 22 C 0.11 1.44 6.43 -3.71 -0.02 1.41 16 23 C -0.09 -0.80 4.96 -104.62 -0.52 -1.32 16 24 C -0.11 -0.95 9.06 -39.59 -0.36 -1.31 16 25 C -0.12 -0.87 10.05 -39.59 -0.40 -1.27 16 26 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 27 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 28 C -0.11 -0.90 9.67 -39.58 -0.38 -1.28 16 29 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.92 5.76 -51.93 -0.30 0.62 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.39 3.91 4.31 -40.82 -0.18 3.74 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.42 7.03 -51.93 -0.37 1.06 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.62 6.91 -51.93 -0.36 1.27 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.64 5.57 -51.93 -0.29 0.35 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.12 0.89 6.90 -52.48 -0.36 0.53 16 48 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 49 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 50 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 51 H 0.12 0.88 8.04 -52.49 -0.42 0.46 16 LS Contribution 395.22 15.07 5.96 5.96 Total: -1.00 -31.53 395.22 -11.63 -43.15 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.49 Total: 3.02 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -4.06 Total: -13.60 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.08 Total: -44.49 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.53 -11.63 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564898708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.350 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds