Wall clock time and date at job start Sat Apr 11 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47528 * 2 1 4 4 H 1.08998 * 109.47614 * 177.91295 * 3 2 1 5 5 C 1.50706 * 109.46909 * 57.90813 * 3 2 1 6 6 H 1.07995 * 119.99970 * 240.00208 * 5 3 2 7 7 C 1.37880 * 119.99547 * 60.00553 * 5 3 2 8 8 N 1.31507 * 120.00436 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99560 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47180 * 60.00024 * 9 7 5 11 11 H 1.48502 * 109.46914 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47472 * 299.99810 * 9 7 5 13 13 N 1.46904 * 109.46744 * 297.91368 * 3 2 1 14 14 C 1.46901 * 110.99885 * 273.72613 * 13 3 2 15 15 C 1.52995 * 109.46699 * 174.80131 * 14 13 3 16 16 F 1.39897 * 110.89029 * 62.42786 * 15 14 13 17 17 C 1.55166 * 111.03457 * 186.33395 * 15 14 13 18 18 C 1.54318 * 102.94074 * 153.58845 * 17 15 14 19 19 N 1.47018 * 107.27626 * 337.80228 * 18 17 15 20 20 C 1.34776 * 125.65082 * 178.97375 * 19 18 17 21 21 O 1.21511 * 119.99933 * 179.97438 * 20 19 18 22 22 O 1.34641 * 119.99699 * 359.96474 * 20 19 18 23 23 C 1.45201 * 116.99607 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47300 * 60.00007 * 23 22 20 25 25 C 1.53000 * 109.46865 * 180.02562 * 23 22 20 26 26 C 1.53008 * 109.47068 * 300.00012 * 23 22 20 27 27 C 1.47421 * 108.69960 * 358.94492 * 19 18 17 28 28 H 1.09003 * 109.46903 * 294.42775 * 1 2 3 29 29 H 1.08997 * 109.46955 * 54.42191 * 1 2 3 30 30 H 1.08999 * 109.47014 * 174.42343 * 1 2 3 31 31 H 1.08995 * 109.47327 * 239.99668 * 2 1 3 32 32 H 1.09002 * 109.47293 * 119.99868 * 2 1 3 33 33 H 0.96993 * 120.00400 * 179.97438 * 8 7 5 34 34 H 1.00906 * 110.99507 * 149.77582 * 13 3 2 35 35 H 1.09000 * 109.46614 * 54.79771 * 14 13 3 36 36 H 1.08999 * 109.47095 * 294.79851 * 14 13 3 37 37 H 1.09004 * 110.71400 * 271.95476 * 17 15 14 38 38 H 1.09001 * 110.71996 * 35.22179 * 17 15 14 39 39 H 1.08998 * 109.88187 * 97.22676 * 18 17 15 40 40 H 1.09002 * 109.87821 * 218.23051 * 18 17 15 41 41 H 1.09000 * 109.46812 * 60.00021 * 24 23 22 42 42 H 1.08993 * 109.47200 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.47211 * 300.00091 * 24 23 22 44 44 H 1.08997 * 109.47429 * 59.99778 * 25 23 22 45 45 H 1.09002 * 109.46766 * 179.97438 * 25 23 22 46 46 H 1.09000 * 109.47207 * 299.99955 * 25 23 22 47 47 H 1.09000 * 109.47034 * 60.00159 * 26 23 22 48 48 H 1.08997 * 109.46769 * 180.02562 * 26 23 22 49 49 H 1.08997 * 109.47025 * 300.00099 * 26 23 22 50 50 H 1.09000 * 110.36644 * 265.28303 * 27 19 18 51 51 H 1.09004 * 110.36665 * 142.96611 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4427 0.0374 5 6 1.4959 2.1677 1.2038 6 1 0.8790 3.0444 1.0727 7 6 1.7857 1.7119 2.4724 8 7 2.5365 0.6441 2.6319 9 14 1.1117 2.6113 3.9645 10 1 -0.3724 2.6115 3.9136 11 1 1.5650 1.9264 5.2017 12 1 1.6072 4.0112 3.9643 13 7 1.5920 2.1202 -1.2239 14 6 2.5305 1.8853 -2.3294 15 6 1.9673 2.4952 -3.6146 16 9 1.8288 3.8817 -3.4898 17 6 2.8513 2.1324 -4.8371 18 6 1.8560 2.1972 -6.0146 19 7 0.5069 2.0268 -5.4558 20 6 -0.6426 2.0427 -6.1594 21 8 -1.7054 1.8904 -5.5904 22 8 -0.6132 2.2277 -7.4927 23 6 -1.8892 2.2327 -8.1857 24 6 -2.7650 3.3593 -7.6336 25 6 -1.6561 2.4537 -9.6816 26 6 -2.5908 0.8899 -7.9722 27 6 0.6197 1.8348 -3.9985 28 1 -0.3633 0.4250 0.9357 29 1 -0.3633 0.5979 -0.8358 30 1 -0.3633 -1.0228 -0.0999 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.7407 0.3237 3.5244 34 1 1.4623 3.1080 -1.0634 35 1 2.6692 0.8129 -2.4664 36 1 3.4891 2.3490 -2.0969 37 1 3.6496 2.8633 -4.9661 38 1 3.2603 1.1275 -4.7326 39 1 1.9320 3.1643 -6.5115 40 1 2.0693 1.3981 -6.7246 41 1 -2.2650 4.3158 -7.7857 42 1 -3.7226 3.3633 -8.1541 43 1 -2.9309 3.2015 -6.5679 44 1 -1.0323 1.6509 -10.0747 45 1 -2.6139 2.4570 -10.2019 46 1 -1.1560 3.4101 -9.8341 47 1 -2.7568 0.7321 -6.9065 48 1 -3.5484 0.8936 -8.4928 49 1 -1.9669 0.0874 -8.3655 50 1 0.6351 0.7723 -3.7559 51 1 -0.2050 2.3299 -3.4857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:38 Heat of formation + Delta-G solvation = -133.212667 kcal Electronic energy + Delta-G solvation = -30152.740904 eV Core-core repulsion = 26001.456467 eV Total energy + Delta-G solvation = -4151.284436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -47.49162 -40.81494 -38.50833 -36.69025 -36.09757 -34.22141 -33.05021 -31.45120 -30.47377 -28.99435 -27.62464 -27.55032 -26.59390 -24.99386 -23.34154 -22.78658 -21.78383 -20.33248 -19.51444 -19.00579 -18.02579 -16.91975 -16.63674 -16.35759 -15.93767 -15.38695 -15.07839 -14.98215 -14.77604 -14.51839 -14.02995 -13.92589 -13.90609 -13.44088 -13.15021 -13.03973 -12.73921 -12.70375 -12.40744 -12.30106 -12.14594 -12.09149 -12.05590 -12.00857 -11.64519 -11.51992 -11.47238 -11.43013 -11.07304 -10.88750 -10.75661 -10.54975 -10.50238 -10.38612 -10.08742 -10.05230 -9.70422 -9.38617 -8.82164 -8.78368 -8.48866 -7.36827 -6.03770 -4.08914 1.98754 2.81383 3.31211 3.35682 3.39058 3.72754 4.16840 4.25623 4.40512 4.51651 4.55373 4.58624 4.68294 4.70261 5.09954 5.16747 5.23661 5.27321 5.30824 5.32458 5.41387 5.47200 5.49579 5.55681 5.58857 5.66971 5.73363 5.75657 5.78070 5.96641 6.04147 6.07224 6.12469 6.19399 6.34744 6.37603 6.50276 6.68752 6.83931 7.20250 7.22816 7.40289 7.46460 7.71730 7.76243 7.80803 8.20148 8.29367 8.30723 8.58691 8.98510 9.55948 11.02279 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.002675 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.107541 B =10466.277923 C =10925.925061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.052 3.948 15 C 0.112 3.888 16 F -0.196 7.196 17 C -0.152 4.152 18 C 0.107 3.893 19 N -0.606 5.606 20 C 0.668 3.332 21 O -0.562 6.562 22 O -0.363 6.363 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.139 4.139 26 C -0.184 4.184 27 C 0.123 3.877 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.013 0.987 31 H 0.009 0.991 32 H 0.086 0.914 33 H 0.261 0.739 34 H 0.337 0.663 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.093 0.907 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 1.493 -23.026 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.079 4.079 15 C 0.092 3.908 16 F -0.177 7.177 17 C -0.190 4.190 18 C -0.016 4.016 19 N -0.347 5.347 20 C 0.424 3.576 21 O -0.451 6.451 22 O -0.279 6.279 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.196 4.196 26 C -0.241 4.241 27 C 0.002 3.998 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.421 0.852 -22.990 23.259 hybrid contribution 0.408 1.091 1.078 1.587 sum -3.013 1.942 -21.913 22.204 Atomic orbital electron populations 1.21444 0.97373 0.97193 1.01707 1.21433 0.95184 0.98068 0.99300 1.19126 0.93359 0.91601 0.84865 0.98044 1.21135 1.31782 1.12030 0.90292 0.92272 1.24862 0.95033 0.94991 0.98844 1.69863 1.37357 1.23066 1.22513 0.86632 0.79510 0.79739 0.81972 1.20165 1.21377 1.20381 1.60712 1.46327 1.17024 1.07541 1.22288 0.94788 1.00820 0.90038 1.22102 0.95589 0.76628 0.96462 1.92853 1.96729 1.31072 1.97043 1.23289 0.97963 1.04553 0.93227 1.22000 0.81066 1.02194 0.96364 1.47187 1.04222 1.74675 1.08653 1.17428 0.83072 0.76535 0.80609 1.90923 1.28145 1.55363 1.70681 1.86295 1.36640 1.85537 1.19380 1.22062 0.80186 0.96603 0.91300 1.22520 0.99512 0.97444 1.04646 1.21847 1.02932 1.03051 0.91812 1.22521 1.00556 0.95589 1.05413 1.22678 0.98189 1.02242 0.76651 0.92903 0.93404 0.96836 0.97228 0.89605 0.92889 0.84505 0.89620 0.94365 0.88585 0.88335 0.91015 0.90784 0.92213 0.91200 0.89219 0.91548 0.90190 0.91529 0.89232 0.91199 0.92244 0.88909 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.46 37.16 0.35 -2.29 16 2 C -0.10 -2.35 5.57 -26.73 -0.15 -2.50 16 3 C 0.22 5.15 2.30 -68.86 -0.16 4.99 16 4 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 5 C -0.51 -13.47 7.33 -34.44 -0.25 -13.72 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.63 11.34 55.43 0.63 -24.00 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.48 5.21 -107.95 -0.56 -14.05 16 14 C 0.05 0.82 4.76 -3.83 -0.02 0.80 16 15 C 0.11 1.54 1.36 -88.47 -0.12 1.42 16 16 F -0.20 -3.14 16.75 2.25 0.04 -3.11 16 17 C -0.15 -1.52 6.23 -24.89 -0.16 -1.68 16 18 C 0.11 1.12 6.89 -3.07 -0.02 1.10 16 19 N -0.61 -8.30 3.33 -176.31 -0.59 -8.89 16 20 C 0.67 9.95 7.93 54.05 0.43 10.38 16 21 O -0.56 -9.64 12.14 -19.28 -0.23 -9.88 16 22 O -0.36 -4.65 9.49 -40.33 -0.38 -5.03 16 23 C 0.14 1.41 1.13 -90.62 -0.10 1.31 16 24 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 25 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 26 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 27 C 0.12 1.81 5.89 -2.53 -0.01 1.79 16 28 H 0.05 1.27 7.37 -51.93 -0.38 0.88 16 29 H 0.05 1.02 7.50 -51.93 -0.39 0.63 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.01 0.19 7.43 -51.93 -0.39 -0.19 16 32 H 0.09 2.23 6.13 -51.93 -0.32 1.92 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.34 6.88 7.99 -39.29 -0.31 6.56 16 35 H 0.09 1.31 7.36 -51.93 -0.38 0.92 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.84 8.02 -51.93 -0.42 0.42 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.20 5.88 -51.93 -0.31 0.89 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 1.35 8.04 -51.93 -0.42 0.93 16 51 H 0.10 1.71 8.04 -51.93 -0.42 1.29 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -29.35 399.95 -8.50 -37.85 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -9.05 Total: 5.70 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 0.64 Total: -0.63 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.52 Total: -46.94 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.62 Total: -14.91 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.35 -8.50 -37.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.364 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds