Wall clock time and date at job start Sat Apr 11 2020 02:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 H 1.09007 * 109.47702 * 174.06507 * 3 2 1 5 5 C 1.50697 * 109.47170 * 54.06112 * 3 2 1 6 6 H 1.08003 * 120.00451 * 240.00342 * 5 3 2 7 7 C 1.37877 * 120.00071 * 60.00242 * 5 3 2 8 8 N 1.31522 * 119.99775 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00315 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47389 * 89.99778 * 9 7 5 11 11 H 1.48500 * 109.47080 * 209.99647 * 9 7 5 12 12 H 1.48495 * 109.46945 * 329.99662 * 9 7 5 13 13 N 1.46901 * 109.47307 * 294.06330 * 3 2 1 14 14 C 1.46905 * 110.99908 * 275.52981 * 13 3 2 15 15 C 1.52997 * 109.46889 * 176.81203 * 14 13 3 16 16 F 1.39900 * 110.91494 * 308.89721 * 15 14 13 17 17 C 1.55160 * 111.00373 * 185.00111 * 15 14 13 18 18 C 1.54322 * 103.10307 * 206.51262 * 17 15 14 19 19 N 1.47018 * 107.27270 * 22.09798 * 18 17 15 20 20 C 1.34776 * 125.64902 * 181.01772 * 19 18 17 21 21 O 1.21511 * 119.99776 * 180.02562 * 20 19 18 22 22 O 1.34635 * 120.00002 * 0.03562 * 20 19 18 23 23 C 1.45203 * 116.99943 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.46853 * 60.00105 * 23 22 20 25 25 C 1.52998 * 109.46884 * 179.97438 * 23 22 20 26 26 C 1.52999 * 109.47535 * 300.00133 * 23 22 20 27 27 C 1.47423 * 108.70386 * 1.06553 * 19 18 17 28 28 H 1.09000 * 109.47489 * 58.60633 * 1 2 3 29 29 H 1.09004 * 109.47310 * 178.60950 * 1 2 3 30 30 H 1.09006 * 109.46894 * 298.60338 * 1 2 3 31 31 H 1.09006 * 109.47245 * 240.00531 * 2 1 3 32 32 H 1.09000 * 109.47398 * 120.00434 * 2 1 3 33 33 H 0.96999 * 119.99403 * 180.02562 * 8 7 5 34 34 H 1.00899 * 111.00181 * 39.48066 * 13 3 2 35 35 H 1.09001 * 109.47084 * 56.81211 * 14 13 3 36 36 H 1.08997 * 109.47027 * 296.80893 * 14 13 3 37 37 H 1.09005 * 110.72164 * 88.05904 * 17 15 14 38 38 H 1.09002 * 110.72162 * 324.96480 * 17 15 14 39 39 H 1.08997 * 109.87989 * 141.52335 * 18 17 15 40 40 H 1.09004 * 109.88089 * 262.53186 * 18 17 15 41 41 H 1.09002 * 109.47060 * 59.99778 * 24 23 22 42 42 H 1.09000 * 109.46998 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47388 * 299.99768 * 24 23 22 44 44 H 1.09003 * 109.47055 * 60.00519 * 25 23 22 45 45 H 1.09000 * 109.47089 * 180.02562 * 25 23 22 46 46 H 1.09002 * 109.47223 * 300.00340 * 25 23 22 47 47 H 1.09000 * 109.47133 * 59.99527 * 26 23 22 48 48 H 1.08995 * 109.47430 * 179.97438 * 26 23 22 49 49 H 1.09000 * 109.46731 * 300.00150 * 26 23 22 50 50 H 1.09002 * 110.37139 * 94.70355 * 27 19 18 51 51 H 1.09000 * 110.36665 * 217.02991 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1248 1.4444 0.1063 5 6 1.4212 2.1940 1.1503 6 1 0.8144 3.0671 0.9610 7 6 1.6298 1.7671 2.4446 8 7 2.3684 0.7035 2.6752 9 14 0.8623 2.6982 3.8705 10 1 -0.4798 2.1348 4.1646 11 1 1.7277 2.5674 5.0702 12 1 0.7289 4.1326 3.5104 13 7 1.6708 2.0924 -1.2646 14 6 2.6552 1.7983 -2.3147 15 6 2.1968 2.4245 -3.6332 16 9 0.8753 2.0678 -3.9226 17 6 3.1463 2.0309 -4.7955 18 6 2.9901 3.2031 -5.7870 19 7 2.4950 4.3577 -5.0234 20 6 2.2107 5.5728 -5.5326 21 8 1.8061 6.4572 -4.8043 22 8 2.3750 5.8065 -6.8483 23 6 2.0487 7.1380 -7.3271 24 6 2.9289 8.1663 -6.6138 25 6 2.2974 7.2129 -8.8349 26 6 0.5767 7.4378 -7.0369 27 6 2.3619 3.9667 -3.6082 28 1 -0.3634 0.5353 -0.8772 29 1 -0.3634 -1.0274 -0.0249 30 1 -0.3633 0.4920 0.9023 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.5148 0.4029 3.5858 34 1 0.7427 1.8214 -1.5530 35 1 2.7447 0.7189 -2.4368 36 1 3.6226 2.2135 -2.0323 37 1 2.8283 1.0939 -5.2529 38 1 4.1756 1.9572 -4.4446 39 1 3.9550 3.4409 -6.2348 40 1 2.2756 2.9371 -6.5660 41 1 3.9776 7.9526 -6.8205 42 1 2.6842 9.1657 -6.9735 43 1 2.7521 8.1130 -5.5395 44 1 1.6706 6.4802 -9.3433 45 1 2.0529 8.2125 -9.1942 46 1 3.3462 6.9994 -9.0412 47 1 0.3999 7.3845 -5.9627 48 1 0.3319 8.4374 -7.3959 49 1 -0.0503 6.7052 -7.5451 50 1 3.2591 4.2403 -3.0530 51 1 1.4832 4.4361 -3.1660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:43 Heat of formation + Delta-G solvation = -131.413706 kcal Electronic energy + Delta-G solvation = -29986.371758 eV Core-core repulsion = 25835.165331 eV Total energy + Delta-G solvation = -4151.206428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.52404 -40.83550 -38.51950 -36.77644 -36.24845 -34.24276 -33.02593 -31.51443 -30.42262 -28.90122 -27.63555 -27.56191 -26.62896 -25.02911 -23.41643 -22.81850 -21.80279 -20.36686 -19.53588 -19.30682 -18.04211 -16.93380 -16.62124 -16.23712 -15.83305 -15.41854 -15.20247 -15.01283 -14.76557 -14.59626 -14.15706 -13.98015 -13.91151 -13.30801 -13.08712 -12.85672 -12.79255 -12.72657 -12.51484 -12.32833 -12.30954 -12.16911 -12.10175 -12.05243 -11.69741 -11.58447 -11.51926 -11.44891 -11.09709 -10.86710 -10.73286 -10.54205 -10.51893 -10.50560 -10.10880 -9.99114 -9.76463 -9.55637 -8.98769 -8.81285 -8.35100 -7.31621 -5.98272 -3.99440 1.96089 2.79048 3.33553 3.40457 3.45622 3.70493 4.14571 4.23155 4.44477 4.50330 4.54162 4.55724 4.66495 4.69045 5.06634 5.15270 5.22686 5.28638 5.31419 5.34004 5.39179 5.46110 5.47331 5.54473 5.57161 5.65791 5.71752 5.74092 5.77323 5.91625 6.01085 6.03695 6.11194 6.17811 6.31686 6.35101 6.35487 6.39517 6.56393 6.89843 7.20885 7.25788 7.37578 7.49885 7.66970 7.87285 8.23847 8.27073 8.46662 8.57259 9.06186 9.64348 11.08928 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.002679 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.019035 B =10449.022850 C =11338.087157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 C 0.217 3.783 4 H 0.034 0.966 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.051 3.949 15 C 0.111 3.889 16 F -0.195 7.195 17 C -0.152 4.152 18 C 0.107 3.893 19 N -0.605 5.605 20 C 0.669 3.331 21 O -0.562 6.562 22 O -0.363 6.363 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.139 4.139 26 C -0.184 4.184 27 C 0.119 3.881 28 H 0.030 0.970 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.010 0.990 32 H 0.093 0.907 33 H 0.259 0.741 34 H 0.334 0.666 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.093 0.907 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 6.739 -22.192 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.315 5.315 14 C -0.080 4.080 15 C 0.092 3.908 16 F -0.175 7.175 17 C -0.191 4.191 18 C -0.016 4.016 19 N -0.347 5.347 20 C 0.424 3.576 21 O -0.451 6.451 22 O -0.278 6.278 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.196 4.196 26 C -0.241 4.241 27 C -0.002 4.002 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.029 0.971 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.153 0.847 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.941 7.665 -21.745 23.243 hybrid contribution -0.686 -0.590 0.541 1.054 sum 2.255 7.075 -21.204 22.466 Atomic orbital electron populations 1.21569 0.97587 0.98065 1.01363 1.22105 0.95166 1.01032 1.00173 1.19211 0.96111 0.88699 0.85064 0.94818 1.21046 1.30462 1.11564 0.89646 0.91933 1.24900 0.95531 0.95179 0.98707 1.69884 1.39280 1.24153 1.20330 0.86568 0.78972 0.80450 0.81871 1.20866 1.21461 1.19845 1.60903 1.04150 1.63244 1.03229 1.22310 0.98519 0.97933 0.89281 1.22146 0.78279 0.94410 0.95986 1.92845 1.37250 1.92899 1.94555 1.23291 1.01375 0.98767 0.95621 1.22005 0.99869 0.85009 0.94720 1.47153 1.68281 1.09025 1.10210 1.17424 0.77148 0.82068 0.80981 1.90925 1.50874 1.43163 1.60149 1.86294 1.81612 1.36239 1.23668 1.22065 0.95601 0.78374 0.94111 1.22522 0.99297 0.98340 1.03933 1.21848 1.03014 1.02884 0.91901 1.22521 0.94236 1.02052 1.05328 1.22779 1.05003 0.93130 0.79297 0.95052 0.95891 0.91502 0.97126 0.88894 0.93131 0.84681 0.94367 0.89596 0.88577 0.88294 0.90756 0.90960 0.92236 0.91182 0.89237 0.91517 0.90177 0.91541 0.89232 0.91179 0.92190 0.88927 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.39 37.16 0.35 -2.39 16 2 C -0.15 -3.31 5.50 -26.74 -0.15 -3.46 16 3 C 0.22 5.14 2.33 -68.87 -0.16 4.98 16 4 H 0.03 0.87 7.85 -51.92 -0.41 0.47 16 5 C -0.49 -12.96 7.35 -34.44 -0.25 -13.22 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.45 16 8 N -0.90 -24.86 11.39 55.43 0.63 -24.23 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.68 -13.77 6.20 -107.95 -0.67 -14.44 16 14 C 0.05 0.81 4.82 -3.82 -0.02 0.79 16 15 C 0.11 1.54 1.37 -88.35 -0.12 1.41 16 16 F -0.20 -3.13 16.22 2.25 0.04 -3.10 16 17 C -0.15 -1.51 6.22 -24.90 -0.15 -1.67 16 18 C 0.11 1.10 6.90 -3.07 -0.02 1.08 16 19 N -0.61 -8.20 3.33 -176.17 -0.59 -8.78 16 20 C 0.67 9.86 7.93 54.05 0.43 10.29 16 21 O -0.56 -9.58 12.14 -19.28 -0.23 -9.81 16 22 O -0.36 -4.60 9.49 -40.31 -0.38 -4.98 16 23 C 0.14 1.39 1.13 -90.62 -0.10 1.29 16 24 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16 25 C -0.14 -1.00 8.85 37.16 0.33 -0.67 16 26 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 27 C 0.12 1.72 6.15 -2.41 -0.01 1.71 16 28 H 0.03 0.62 6.43 -51.93 -0.33 0.28 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.57 7.04 -51.93 -0.37 1.20 16 31 H 0.01 0.21 7.26 -51.93 -0.38 -0.16 16 32 H 0.09 2.38 6.25 -51.93 -0.32 2.06 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.33 6.78 5.86 -39.29 -0.23 6.55 16 35 H 0.04 0.61 7.26 -51.93 -0.38 0.23 16 36 H 0.09 1.31 7.94 -51.93 -0.41 0.90 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.82 8.04 -51.93 -0.42 0.40 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.09 1.29 7.91 -51.93 -0.41 0.88 16 51 H 0.10 1.70 8.04 -51.93 -0.42 1.28 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -29.69 396.84 -8.48 -38.17 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.88 Total: 6.48 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 0.64 Total: -1.54 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.62 Total: -47.45 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.62 Total: -14.79 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.69 -8.48 -38.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.243 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds