Wall clock time and date at job start Sat Apr 11 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47428 * 2 1 4 4 H 1.09007 * 109.47037 * 54.81277 * 3 2 1 5 5 C 1.50698 * 109.47448 * 174.81549 * 3 2 1 6 6 H 1.07995 * 119.99710 * 119.99531 * 5 3 2 7 7 C 1.37878 * 119.99983 * 300.00253 * 5 3 2 8 8 N 1.31513 * 120.00106 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99788 * 359.97438 * 7 5 3 10 10 H 1.48507 * 109.47004 * 90.00583 * 9 7 5 11 11 H 1.48501 * 109.47189 * 210.00051 * 9 7 5 12 12 H 1.48497 * 109.47477 * 330.00558 * 9 7 5 13 13 N 1.46908 * 109.46835 * 294.81704 * 3 2 1 14 14 C 1.46896 * 110.99618 * 154.25978 * 13 3 2 15 15 C 1.53007 * 109.47018 * 185.00808 * 14 13 3 16 16 F 1.39901 * 110.88166 * 62.42672 * 15 14 13 17 17 C 1.55151 * 111.00661 * 186.34889 * 15 14 13 18 18 C 1.54324 * 102.94168 * 153.57636 * 17 15 14 19 19 N 1.47016 * 107.27347 * 337.80839 * 18 17 15 20 20 C 1.34775 * 125.65134 * 178.97066 * 19 18 17 21 21 O 1.21512 * 119.99965 * 179.97438 * 20 19 18 22 22 O 1.34632 * 119.99948 * 359.96465 * 20 19 18 23 23 C 1.45197 * 117.00169 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.47147 * 60.00024 * 23 22 20 25 25 C 1.53002 * 109.47330 * 179.97438 * 23 22 20 26 26 C 1.53005 * 109.47286 * 300.00142 * 23 22 20 27 27 C 1.47432 * 108.70093 * 358.94149 * 19 18 17 28 28 H 1.09004 * 109.47151 * 305.11173 * 1 2 3 29 29 H 1.08998 * 109.47398 * 65.11004 * 1 2 3 30 30 H 1.09001 * 109.47279 * 185.11887 * 1 2 3 31 31 H 1.09002 * 109.46793 * 239.99727 * 2 1 3 32 32 H 1.09005 * 109.46987 * 120.00061 * 2 1 3 33 33 H 0.96993 * 120.00166 * 179.97438 * 8 7 5 34 34 H 1.00897 * 110.99763 * 278.21043 * 13 3 2 35 35 H 1.09003 * 109.47446 * 65.01224 * 14 13 3 36 36 H 1.09000 * 109.47656 * 305.00750 * 14 13 3 37 37 H 1.08998 * 110.72069 * 271.94023 * 17 15 14 38 38 H 1.09000 * 110.72249 * 35.21537 * 17 15 14 39 39 H 1.08996 * 109.88273 * 218.39024 * 18 17 15 40 40 H 1.09008 * 110.00854 * 97.29840 * 18 17 15 41 41 H 1.09006 * 109.47202 * 59.99968 * 24 23 22 42 42 H 1.08998 * 109.47321 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.47019 * 299.99999 * 24 23 22 44 44 H 1.08994 * 109.47118 * 60.00390 * 25 23 22 45 45 H 1.08998 * 109.47450 * 180.02562 * 25 23 22 46 46 H 1.09006 * 109.47095 * 300.00079 * 25 23 22 47 47 H 1.08999 * 109.47188 * 59.99812 * 26 23 22 48 48 H 1.08998 * 109.46992 * 179.97438 * 26 23 22 49 49 H 1.09000 * 109.46702 * 299.99531 * 26 23 22 50 50 H 1.09001 * 110.36562 * 265.28480 * 27 19 18 51 51 H 1.09003 * 110.46125 * 143.01596 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5416 1.4444 0.1284 6 1 4.1491 1.8880 -0.6464 7 6 4.1396 0.8796 1.2349 8 7 5.4499 0.8808 1.3468 9 14 3.0885 0.1127 2.5753 10 1 2.8676 -1.3238 2.2700 11 1 3.7823 0.2400 3.8821 12 1 1.7800 0.8120 2.6393 13 7 1.6552 2.0979 -1.2572 14 6 1.5589 3.5534 -1.0839 15 6 1.0369 4.1872 -2.3750 16 9 -0.2517 3.7291 -2.6699 17 6 1.0709 5.7359 -2.2876 18 6 1.1955 6.1628 -3.7653 19 7 1.7541 5.0210 -4.5040 20 6 1.9976 4.9859 -5.8291 21 8 2.4635 3.9841 -6.3349 22 8 1.7245 6.0608 -6.5924 23 6 2.0127 5.9521 -8.0113 24 6 1.1977 4.8044 -8.6108 25 6 1.6390 7.2612 -8.7095 26 6 3.5045 5.6758 -8.2091 27 6 2.0045 3.9209 -3.5549 28 1 -0.3634 0.5911 0.8407 29 1 -0.3634 0.4325 -0.9322 30 1 -0.3634 -1.0236 0.0917 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8706 0.4839 2.1254 34 1 2.2983 1.8637 -1.9986 35 1 2.5444 3.9579 -0.8533 36 1 0.8737 3.7775 -0.2663 37 1 0.1476 6.1180 -1.8523 38 1 1.9359 6.0710 -1.7152 39 1 1.8631 7.0204 -3.8484 40 1 0.2135 6.4177 -4.1640 41 1 0.1348 5.0011 -8.4700 42 1 1.4136 4.7230 -9.6761 43 1 1.4635 3.8715 -8.1136 44 1 2.2193 8.0791 -8.2826 45 1 1.8549 7.1795 -9.7747 46 1 0.5760 7.4576 -8.5686 47 1 3.7703 4.7430 -7.7118 48 1 3.7207 5.5938 -9.2743 49 1 4.0851 6.4935 -7.7821 50 1 3.0384 3.9449 -3.2106 51 1 1.7821 2.9597 -4.0185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:52 Heat of formation + Delta-G solvation = -128.090211 kcal Electronic energy + Delta-G solvation = -30104.966580 eV Core-core repulsion = 25953.904270 eV Total energy + Delta-G solvation = -4151.062310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.37592 -40.84153 -38.55989 -36.80163 -36.22542 -34.24383 -33.02066 -31.94514 -30.90166 -29.05494 -27.62914 -27.55587 -27.07404 -25.30931 -23.17682 -22.27533 -21.84625 -20.19619 -19.97916 -19.43760 -18.03523 -17.27069 -16.75517 -16.55281 -15.94958 -15.41748 -15.27167 -15.02309 -14.90772 -14.57427 -14.04361 -14.00460 -13.86337 -13.37705 -13.13615 -13.01729 -12.83921 -12.72581 -12.65900 -12.40354 -12.31938 -12.24858 -12.09656 -12.05767 -11.78095 -11.68199 -11.59168 -11.49836 -11.44452 -11.13242 -10.73119 -10.69536 -10.53957 -10.51434 -10.19717 -10.09490 -9.79745 -9.48100 -9.26508 -8.82592 -8.62806 -7.49322 -6.18072 -4.20066 1.95011 2.78365 3.23438 3.33854 3.35774 3.70088 4.15638 4.22692 4.32648 4.50795 4.53974 4.55389 4.69273 4.69614 5.03855 5.12222 5.17763 5.23463 5.27583 5.32074 5.35544 5.42837 5.46857 5.54815 5.59958 5.66378 5.70820 5.74942 5.79516 5.86475 6.00214 6.05705 6.06395 6.11769 6.12572 6.18040 6.27833 6.33312 6.34618 6.67642 6.72300 6.95118 7.06098 7.22326 7.36292 7.47715 7.88465 8.24366 8.26474 8.39451 8.82769 9.44990 10.94574 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.002741 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.983976 B =10211.536154 C =10555.242607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.186 3.814 4 H 0.034 0.966 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.678 5.678 14 C 0.056 3.944 15 C 0.115 3.885 16 F -0.189 7.189 17 C -0.152 4.152 18 C 0.107 3.893 19 N -0.603 5.603 20 C 0.669 3.331 21 O -0.563 6.563 22 O -0.362 6.362 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.139 4.139 26 C -0.184 4.184 27 C 0.107 3.893 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.336 0.664 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 13.702 -14.855 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.077 3.923 4 H 0.051 0.949 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.307 5.307 14 C -0.075 4.075 15 C 0.095 3.905 16 F -0.169 7.169 17 C -0.191 4.191 18 C -0.016 4.016 19 N -0.344 5.344 20 C 0.424 3.576 21 O -0.452 6.452 22 O -0.277 6.277 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.196 4.196 26 C -0.241 4.241 27 C -0.015 4.015 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.153 0.847 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.110 0.890 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.600 13.253 -14.990 22.193 hybrid contribution 0.553 -0.281 0.787 1.002 sum -9.047 12.972 -14.204 21.257 Atomic orbital electron populations 1.21724 0.97436 0.99170 1.01657 1.21815 0.93945 0.99170 1.00465 1.19593 0.94363 0.90765 0.87616 0.94853 1.21713 0.90398 1.39558 1.07168 0.90900 1.24999 0.94771 0.95165 0.97963 1.69910 1.08968 1.44814 1.29630 0.86814 0.80582 0.79981 0.80607 1.20412 1.22634 1.18895 1.60741 1.55232 1.05168 1.09579 1.22215 1.00626 0.91107 0.93557 1.22039 0.79480 0.93355 0.95599 1.92869 1.39362 1.90210 1.94489 1.23296 1.05224 0.94575 0.95962 1.22027 0.99319 0.88980 0.91282 1.47074 1.66215 1.17321 1.03797 1.17420 0.77423 0.81772 0.80954 1.90921 1.49416 1.33074 1.71784 1.86294 1.80011 1.39598 1.21823 1.22072 0.95859 0.96890 0.75332 1.22523 0.99840 1.00093 1.01657 1.21848 1.02698 0.95202 0.99901 1.22522 0.94166 1.04388 1.03035 1.22849 0.99917 0.90818 0.87902 0.94169 0.91896 0.94896 0.92314 0.93689 0.92560 0.84691 0.92494 0.90097 0.88427 0.88204 0.90726 0.90899 0.92202 0.91178 0.89254 0.91514 0.90169 0.91521 0.89249 0.91167 0.92190 0.89026 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.74 37.16 0.36 -2.26 16 2 C -0.12 -2.49 5.11 -26.73 -0.14 -2.62 16 3 C 0.19 4.12 1.56 -68.86 -0.11 4.01 16 4 H 0.03 0.77 6.77 -51.93 -0.35 0.42 16 5 C -0.55 -14.48 9.04 -34.44 -0.31 -14.79 16 6 H 0.07 2.07 7.97 -52.49 -0.42 1.65 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 9 Si 0.89 21.48 24.41 -169.99 -4.15 17.33 16 10 H -0.28 -6.60 6.83 56.52 0.39 -6.21 16 11 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.26 -6.10 6.53 56.52 0.37 -5.73 16 13 N -0.68 -12.79 5.73 -107.94 -0.62 -13.41 16 14 C 0.06 0.89 4.85 -3.82 -0.02 0.88 16 15 C 0.12 1.57 1.36 -88.47 -0.12 1.45 16 16 F -0.19 -3.01 17.00 2.25 0.04 -2.97 16 17 C -0.15 -1.55 6.23 -24.90 -0.16 -1.71 16 18 C 0.11 1.13 6.89 -3.07 -0.02 1.11 16 19 N -0.60 -8.22 3.33 -176.30 -0.59 -8.81 16 20 C 0.67 9.91 7.93 54.05 0.43 10.34 16 21 O -0.56 -9.56 12.14 -19.28 -0.23 -9.79 16 22 O -0.36 -4.63 9.49 -40.30 -0.38 -5.01 16 23 C 0.14 1.41 1.13 -90.62 -0.10 1.31 16 24 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 25 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 26 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 27 C 0.11 1.52 5.27 -2.53 -0.01 1.51 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.04 1.03 3.22 -51.93 -0.17 0.86 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.34 6.40 7.56 -39.29 -0.30 6.11 16 35 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 36 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.91 8.01 -51.93 -0.42 0.49 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 51 H 0.10 1.56 8.01 -51.93 -0.42 1.15 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -30.96 396.08 -7.55 -38.51 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -9.01 Total: 6.67 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 0.66 Total: -2.68 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.43 Total: -48.02 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.62 Total: -14.80 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.15 Total: 17.33 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.96 -7.55 -38.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.583 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds