Wall clock time and date at job start Sat Apr 11 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47428 * 2 1 4 4 H 1.09007 * 109.47037 * 54.81277 * 3 2 1 5 5 C 1.50698 * 109.47448 * 174.81549 * 3 2 1 6 6 H 1.07995 * 119.99710 * 119.99531 * 5 3 2 7 7 C 1.37878 * 119.99983 * 300.00253 * 5 3 2 8 8 N 1.31513 * 120.00106 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99788 * 359.97438 * 7 5 3 10 10 H 1.48507 * 109.47004 * 90.00583 * 9 7 5 11 11 H 1.48501 * 109.47189 * 210.00051 * 9 7 5 12 12 H 1.48497 * 109.47477 * 330.00558 * 9 7 5 13 13 N 1.46908 * 109.46835 * 294.81704 * 3 2 1 14 14 C 1.46896 * 110.99618 * 154.25978 * 13 3 2 15 15 C 1.53007 * 109.47018 * 185.00808 * 14 13 3 16 16 F 1.39901 * 110.88166 * 62.42672 * 15 14 13 17 17 C 1.55151 * 111.00661 * 186.34889 * 15 14 13 18 18 C 1.54324 * 102.94168 * 153.57636 * 17 15 14 19 19 N 1.47016 * 107.27347 * 337.80839 * 18 17 15 20 20 C 1.34775 * 125.65134 * 178.97066 * 19 18 17 21 21 O 1.21512 * 119.99965 * 179.97438 * 20 19 18 22 22 O 1.34632 * 119.99948 * 359.96465 * 20 19 18 23 23 C 1.45197 * 117.00169 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.47147 * 60.00024 * 23 22 20 25 25 C 1.53002 * 109.47330 * 179.97438 * 23 22 20 26 26 C 1.53005 * 109.47286 * 300.00142 * 23 22 20 27 27 C 1.47432 * 108.70093 * 358.94149 * 19 18 17 28 28 H 1.09004 * 109.47151 * 305.11173 * 1 2 3 29 29 H 1.08998 * 109.47398 * 65.11004 * 1 2 3 30 30 H 1.09001 * 109.47279 * 185.11887 * 1 2 3 31 31 H 1.09002 * 109.46793 * 239.99727 * 2 1 3 32 32 H 1.09005 * 109.46987 * 120.00061 * 2 1 3 33 33 H 0.96993 * 120.00166 * 179.97438 * 8 7 5 34 34 H 1.00897 * 110.99763 * 278.21043 * 13 3 2 35 35 H 1.09003 * 109.47446 * 65.01224 * 14 13 3 36 36 H 1.09000 * 109.47656 * 305.00750 * 14 13 3 37 37 H 1.08998 * 110.72069 * 271.94023 * 17 15 14 38 38 H 1.09000 * 110.72249 * 35.21537 * 17 15 14 39 39 H 1.08996 * 109.88273 * 218.39024 * 18 17 15 40 40 H 1.09008 * 110.00854 * 97.29840 * 18 17 15 41 41 H 1.09006 * 109.47202 * 59.99968 * 24 23 22 42 42 H 1.08998 * 109.47321 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.47019 * 299.99999 * 24 23 22 44 44 H 1.08994 * 109.47118 * 60.00390 * 25 23 22 45 45 H 1.08998 * 109.47450 * 180.02562 * 25 23 22 46 46 H 1.09006 * 109.47095 * 300.00079 * 25 23 22 47 47 H 1.08999 * 109.47188 * 59.99812 * 26 23 22 48 48 H 1.08998 * 109.46992 * 179.97438 * 26 23 22 49 49 H 1.09000 * 109.46702 * 299.99531 * 26 23 22 50 50 H 1.09001 * 110.36562 * 265.28480 * 27 19 18 51 51 H 1.09003 * 110.46125 * 143.01596 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5416 1.4444 0.1284 6 1 4.1491 1.8880 -0.6464 7 6 4.1396 0.8796 1.2349 8 7 5.4499 0.8808 1.3468 9 14 3.0885 0.1127 2.5753 10 1 2.8676 -1.3238 2.2700 11 1 3.7823 0.2400 3.8821 12 1 1.7800 0.8120 2.6393 13 7 1.6552 2.0979 -1.2572 14 6 1.5589 3.5534 -1.0839 15 6 1.0369 4.1872 -2.3750 16 9 -0.2517 3.7291 -2.6699 17 6 1.0709 5.7359 -2.2876 18 6 1.1955 6.1628 -3.7653 19 7 1.7541 5.0210 -4.5040 20 6 1.9976 4.9859 -5.8291 21 8 2.4635 3.9841 -6.3349 22 8 1.7245 6.0608 -6.5924 23 6 2.0127 5.9521 -8.0113 24 6 1.1977 4.8044 -8.6108 25 6 1.6390 7.2612 -8.7095 26 6 3.5045 5.6758 -8.2091 27 6 2.0045 3.9209 -3.5549 28 1 -0.3634 0.5911 0.8407 29 1 -0.3634 0.4325 -0.9322 30 1 -0.3634 -1.0236 0.0917 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8706 0.4839 2.1254 34 1 2.2983 1.8637 -1.9986 35 1 2.5444 3.9579 -0.8533 36 1 0.8737 3.7775 -0.2663 37 1 0.1476 6.1180 -1.8523 38 1 1.9359 6.0710 -1.7152 39 1 1.8631 7.0204 -3.8484 40 1 0.2135 6.4177 -4.1640 41 1 0.1348 5.0011 -8.4700 42 1 1.4136 4.7230 -9.6761 43 1 1.4635 3.8715 -8.1136 44 1 2.2193 8.0791 -8.2826 45 1 1.8549 7.1795 -9.7747 46 1 0.5760 7.4576 -8.5686 47 1 3.7703 4.7430 -7.7118 48 1 3.7207 5.5938 -9.2743 49 1 4.0851 6.4935 -7.7821 50 1 3.0384 3.9449 -3.2106 51 1 1.7821 2.9597 -4.0185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:50 Heat of formation + Delta-G solvation = -148.277093 kcal Electronic energy + Delta-G solvation = -30105.841949 eV Core-core repulsion = 25953.904270 eV Total energy + Delta-G solvation = -4151.937679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -48.58579 -41.87876 -39.59693 -38.25617 -37.48307 -35.21364 -34.58366 -33.76657 -32.06187 -30.26030 -28.75448 -28.37906 -28.28819 -26.68207 -24.55466 -23.75114 -22.79811 -21.65593 -21.34792 -20.46431 -19.17982 -19.06450 -17.92736 -17.56829 -17.16626 -17.01944 -16.50854 -16.19558 -16.00188 -15.59746 -15.54039 -15.10876 -14.93697 -14.83539 -14.69566 -14.31330 -14.08772 -13.98709 -13.75840 -13.45818 -13.35577 -13.34759 -13.20476 -13.10448 -12.91326 -12.88823 -12.87541 -12.55401 -12.45420 -12.34801 -12.30371 -12.23158 -11.78145 -11.74704 -11.46929 -11.42008 -11.30271 -11.17247 -11.14663 -10.67975 -9.89214 -9.13119 -8.32572 -6.37747 0.93826 1.32222 1.36309 1.46775 1.65949 2.30590 2.74983 3.01908 3.08345 3.23181 3.37302 3.57812 3.74458 3.78715 3.92060 3.93901 4.08901 4.14252 4.37852 4.43234 4.47120 4.52199 4.57391 4.60553 4.62780 4.67892 4.71933 4.74077 4.75405 4.82531 4.85935 4.87807 4.90282 4.96452 5.02806 5.14359 5.15536 5.21124 5.27365 5.29651 5.33392 5.41646 5.45026 5.48147 5.63526 6.05578 6.29509 6.35326 6.58327 6.75168 7.16682 7.31388 8.83330 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.002741 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.983976 B =10211.536154 C =10555.242607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 C 0.192 3.808 4 H 0.034 0.966 5 C -0.544 4.544 6 H 0.038 0.962 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.302 1.302 12 H -0.243 1.243 13 N -0.674 5.674 14 C 0.056 3.944 15 C 0.120 3.880 16 F -0.200 7.200 17 C -0.139 4.139 18 C 0.104 3.896 19 N -0.606 5.606 20 C 0.663 3.337 21 O -0.594 6.594 22 O -0.361 6.361 23 C 0.122 3.878 24 C -0.181 4.181 25 C -0.132 4.132 26 C -0.181 4.181 27 C 0.108 3.892 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.332 0.668 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.093 0.907 49 H 0.063 0.937 50 H 0.086 0.914 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.567 15.391 -15.117 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.082 3.918 4 H 0.051 0.949 5 C -0.583 4.583 6 H 0.056 0.944 7 C -0.181 4.181 8 N -0.585 5.585 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.230 1.230 12 H -0.166 1.166 13 N -0.302 5.302 14 C -0.075 4.075 15 C 0.100 3.900 16 F -0.180 7.180 17 C -0.177 4.177 18 C -0.018 4.018 19 N -0.348 5.348 20 C 0.419 3.581 21 O -0.485 6.485 22 O -0.275 6.275 23 C 0.086 3.914 24 C -0.238 4.238 25 C -0.189 4.189 26 C -0.238 4.238 27 C -0.014 4.014 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.112 0.888 49 H 0.082 0.918 50 H 0.104 0.896 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.998 14.979 -15.267 24.524 hybrid contribution 1.345 -0.770 0.734 1.715 sum -10.653 14.209 -14.533 22.948 Atomic orbital electron populations 1.21624 0.94645 1.00723 1.02036 1.21780 0.96414 0.97920 0.99594 1.19447 0.91332 0.91975 0.89018 0.94858 1.22035 0.92647 1.37896 1.05731 0.94415 1.25818 0.95723 0.96003 1.00529 1.70054 1.10952 1.46829 1.30689 0.85866 0.79717 0.79523 0.77387 1.19750 1.22981 1.16633 1.60747 1.54467 1.07100 1.07935 1.22282 1.00645 0.89293 0.95259 1.21964 0.78462 0.95762 0.93770 1.92847 1.40043 1.90662 1.94471 1.23331 1.07159 0.91100 0.96146 1.22257 1.00144 0.88400 0.90959 1.47170 1.66012 1.17955 1.03614 1.17633 0.77222 0.81898 0.81394 1.90912 1.50704 1.34320 1.72531 1.86309 1.79719 1.38483 1.22998 1.22488 0.95847 0.98729 0.74300 1.22481 0.99980 0.98537 1.02776 1.21870 1.03049 0.93199 1.00813 1.22480 0.94380 1.02701 1.04211 1.22695 0.99892 0.90401 0.88402 0.93581 0.91663 0.92828 0.93021 0.94807 0.92615 0.85141 0.93151 0.89221 0.86096 0.86761 0.88802 0.89925 0.91895 0.88787 0.92576 0.91005 0.87792 0.91046 0.92577 0.88818 0.91823 0.89601 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.74 71.98 0.70 -3.83 16 2 C -0.12 -4.95 5.11 30.59 0.16 -4.79 16 3 C 0.19 8.42 1.56 44.17 0.07 8.49 16 4 H 0.03 1.49 6.77 -2.38 -0.02 1.47 16 5 C -0.54 -29.27 9.04 25.60 0.23 -29.04 16 6 H 0.04 2.24 7.97 -2.91 -0.02 2.22 16 7 C 0.02 1.00 5.45 84.66 0.46 1.46 16 8 N -0.95 -57.75 13.96 21.45 0.30 -57.45 16 9 Si 0.95 44.03 24.41 68.60 1.67 45.70 16 10 H -0.27 -12.25 6.83 99.48 0.68 -11.57 16 11 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.24 -10.34 6.53 99.48 0.65 -9.69 16 13 N -0.67 -25.35 5.73 -495.43 -2.84 -28.19 16 14 C 0.06 1.74 4.85 86.31 0.42 2.16 16 15 C 0.12 3.16 1.36 -9.40 -0.01 3.15 16 16 F -0.20 -6.10 17.00 44.97 0.76 -5.34 16 17 C -0.14 -2.48 6.23 31.78 0.20 -2.29 16 18 C 0.10 1.97 6.89 86.73 0.60 2.57 16 19 N -0.61 -16.40 3.33 -942.10 -3.13 -19.53 16 20 C 0.66 19.92 7.93 129.79 1.03 20.95 16 21 O -0.59 -21.19 12.14 19.80 0.24 -20.95 16 22 O -0.36 -8.96 9.49 -55.42 -0.53 -9.48 16 23 C 0.12 2.41 1.13 -10.79 -0.01 2.40 16 24 C -0.18 -3.63 8.37 71.98 0.60 -3.03 16 25 C -0.13 -1.58 8.85 71.98 0.64 -0.94 16 26 C -0.18 -3.63 8.37 71.98 0.60 -3.02 16 27 C 0.11 3.17 5.27 86.85 0.46 3.63 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 2.19 7.90 -2.39 -0.02 2.17 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.03 1.48 3.22 -2.38 -0.01 1.47 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.33 13.05 7.56 -89.70 -0.68 12.37 16 35 H 0.05 1.65 8.07 -2.39 -0.02 1.63 16 36 H 0.09 2.66 7.93 -2.39 -0.02 2.64 16 37 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 1.75 8.01 -2.39 -0.02 1.73 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.09 2.57 8.04 -2.39 -0.02 2.55 16 51 H 0.08 2.54 8.01 -2.39 -0.02 2.52 16 Total: -1.00 -69.34 396.08 2.76 -66.57 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.15 Total: 30.82 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 6.14 Total: -2.14 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -5.67 Total: -105.18 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.29 Total: -30.44 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.76 Total: -5.34 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.67 Total: 45.70 kcal Total: -69.34 2.76 -66.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.703 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds