Wall clock time and date at job start Sat Apr 11 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47154 * 2 1 4 4 H 1.09006 * 109.47171 * 305.73295 * 3 2 1 5 5 C 1.50706 * 109.47181 * 185.73428 * 3 2 1 6 6 H 1.08002 * 119.99580 * 239.99817 * 5 3 2 7 7 C 1.37870 * 120.00033 * 60.00239 * 5 3 2 8 8 N 1.31515 * 120.00221 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00205 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46906 * 59.99475 * 9 7 5 11 11 H 1.48493 * 109.47312 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46688 * 299.99871 * 9 7 5 13 13 N 1.46896 * 109.47075 * 65.73518 * 3 2 1 14 14 C 1.46903 * 111.00205 * 208.30151 * 13 3 2 15 15 H 1.09003 * 109.71274 * 32.74587 * 14 13 3 16 16 C 1.53366 * 109.71879 * 153.34456 * 14 13 3 17 17 C 1.52688 * 108.24571 * 188.72487 * 16 14 13 18 18 C 1.50739 * 110.72305 * 309.08561 * 17 16 14 19 19 C 1.34805 * 122.74316 * 18.06296 * 18 17 16 20 20 C 1.40906 * 119.67494 * 179.35730 * 19 18 17 21 21 C 1.36066 * 119.94516 * 0.29790 * 20 19 18 22 22 C 1.40551 * 118.97300 * 0.08531 * 21 20 19 23 23 O 1.22059 * 120.12111 * 179.78276 * 22 21 20 24 24 N 1.34275 * 119.76028 * 359.81377 * 22 21 20 25 25 C 1.46499 * 119.23028 * 179.88608 * 24 22 21 26 26 C 1.53007 * 109.46920 * 270.01486 * 25 24 22 27 27 C 1.52989 * 117.49852 * 243.74810 * 26 25 24 28 28 C 1.53003 * 117.49711 * 175.08501 * 26 25 24 29 29 C 1.50659 * 122.96932 * 358.96638 * 19 18 17 30 30 H 1.08992 * 109.47389 * 63.39656 * 1 2 3 31 31 H 1.09004 * 109.47122 * 183.39864 * 1 2 3 32 32 H 1.09001 * 109.46811 * 303.39230 * 1 2 3 33 33 H 1.09005 * 109.46707 * 240.00224 * 2 1 3 34 34 H 1.08998 * 109.47392 * 120.00637 * 2 1 3 35 35 H 0.96997 * 120.00300 * 180.02562 * 8 7 5 36 36 H 1.00897 * 111.00171 * 332.25326 * 13 3 2 37 37 H 1.08995 * 109.70999 * 308.41750 * 16 14 13 38 38 H 1.09011 * 109.70587 * 68.99360 * 16 14 13 39 39 H 1.08994 * 109.22609 * 69.40939 * 17 16 14 40 40 H 1.09003 * 109.22796 * 188.81284 * 17 16 14 41 41 H 1.07995 * 120.02681 * 180.27386 * 20 19 18 42 42 H 1.07997 * 120.51454 * 180.11376 * 21 20 19 43 43 H 1.08993 * 109.47101 * 30.01768 * 25 24 22 44 44 H 1.08996 * 109.47413 * 150.01741 * 25 24 22 45 45 H 1.09000 * 115.54727 * 29.42246 * 26 25 24 46 46 H 1.09001 * 117.50043 * 359.97438 * 27 26 25 47 47 H 1.08998 * 117.50129 * 145.02383 * 27 26 25 48 48 H 1.08997 * 117.49505 * 214.97823 * 28 26 25 49 49 H 1.08998 * 117.49528 * 359.97438 * 28 26 25 50 50 H 1.09009 * 109.19124 * 257.50109 * 29 19 18 51 51 H 1.08994 * 109.26559 * 138.14070 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5952 1.9851 -0.8342 5 6 3.5403 1.4448 -0.1420 6 1 4.1549 1.8861 0.6287 7 6 4.1283 0.8837 -1.2557 8 7 3.3799 0.3459 -2.1939 9 14 5.9880 0.8860 -1.4313 10 1 6.5935 0.1463 -0.2948 11 1 6.3655 0.2272 -2.7074 12 1 6.4835 2.2859 -1.4310 13 7 1.6666 2.0938 1.2626 14 6 1.5093 3.5430 1.0810 15 1 1.1327 3.7493 0.0791 16 6 0.5293 4.0921 2.1252 17 6 0.2218 5.5459 1.7743 18 6 1.4953 6.3250 1.5652 19 6 2.6828 5.7317 1.3308 20 6 3.8309 6.5237 1.1310 21 6 3.7375 7.8802 1.1813 22 6 2.4861 8.4675 1.4357 23 8 2.3791 9.6822 1.4894 24 7 1.4089 7.6873 1.6202 25 6 0.1108 8.3116 1.8872 26 6 -0.0692 8.4889 3.3962 27 6 -1.2067 7.7170 4.0675 28 6 -1.3176 9.2317 3.8764 29 6 2.8558 4.2360 1.2779 30 1 -0.3634 0.4602 -0.9188 31 1 -0.3633 -1.0259 0.0609 32 1 -0.3633 0.5656 0.8580 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.7935 -0.0491 -2.9773 36 1 0.8281 1.6845 1.6465 37 1 -0.3905 3.5076 2.1091 38 1 0.9807 4.0399 3.1161 39 1 -0.3720 5.5768 0.8609 40 1 -0.3459 5.9990 2.5870 41 1 4.7844 6.0545 0.9384 42 1 4.6112 8.4962 1.0276 43 1 0.0688 9.2854 1.3993 44 1 -0.6849 7.6760 1.4986 45 1 0.8496 8.6281 3.9660 46 1 -1.8273 7.0831 3.4341 47 1 -1.0367 7.3486 5.0792 48 1 -1.2203 9.8591 4.7623 49 1 -2.0105 9.5944 3.1171 50 1 3.3026 3.8936 2.2114 51 1 3.5161 3.9794 0.4495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:56 Heat of formation + Delta-G solvation = 11.929479 kcal Electronic energy + Delta-G solvation = -29336.714366 eV Core-core repulsion = 25622.492990 eV Total energy + Delta-G solvation = -3714.221376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.61840 -38.39941 -37.82050 -36.46824 -34.65033 -34.40912 -32.06959 -30.92487 -29.83621 -28.22976 -27.52303 -26.10726 -23.80986 -22.98845 -22.97487 -22.46685 -21.93264 -20.72546 -19.71455 -19.39098 -17.63534 -17.01468 -16.36454 -16.15539 -15.85709 -15.42257 -14.84260 -14.71892 -14.43616 -14.22429 -13.91989 -13.79329 -13.54662 -13.35004 -13.01961 -12.73166 -12.65468 -12.56044 -12.29571 -12.11181 -11.86264 -11.80586 -11.76397 -11.25509 -11.07151 -10.96237 -10.91388 -10.73277 -10.67098 -10.53878 -10.36933 -10.29305 -9.91135 -9.81648 -9.75130 -9.67208 -9.48273 -9.07521 -8.35695 -7.64894 -7.31878 -5.98647 -4.02314 0.94600 2.01876 2.63108 3.31974 3.37340 3.39724 3.44938 3.70325 4.28687 4.40372 4.41732 4.47080 4.60468 4.72037 4.78939 4.90668 4.99516 5.10100 5.16696 5.28327 5.28793 5.31094 5.33727 5.46987 5.48792 5.55290 5.61724 5.70828 5.77544 5.79551 5.87447 5.91034 6.03642 6.10384 6.12956 6.13172 6.22053 6.36099 6.38823 6.55046 6.61525 6.71029 6.79902 6.95950 7.03758 7.14255 7.23055 7.45669 7.75339 7.89893 8.13435 8.27516 8.37513 8.71140 9.04758 9.62448 11.06693 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.003512 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.471958 B = 7970.263312 C = 9553.062886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.491 4.491 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.099 3.901 15 H 0.041 0.959 16 C -0.118 4.118 17 C -0.090 4.090 18 C 0.156 3.844 19 C -0.168 4.168 20 C -0.005 4.005 21 C -0.255 4.255 22 C 0.516 3.484 23 O -0.566 6.566 24 N -0.495 5.495 25 C 0.119 3.881 26 C -0.166 4.166 27 C -0.180 4.180 28 C -0.169 4.169 29 C -0.052 4.052 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.259 0.741 36 H 0.320 0.680 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 10.969 9.562 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.530 4.530 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.012 4.012 15 H 0.059 0.941 16 C -0.156 4.156 17 C -0.128 4.128 18 C 0.051 3.949 19 C -0.173 4.173 20 C -0.026 4.026 21 C -0.277 4.277 22 C 0.318 3.682 23 O -0.451 6.451 24 N -0.207 5.207 25 C -0.002 4.002 26 C -0.185 4.185 27 C -0.216 4.216 28 C -0.206 4.206 29 C -0.091 4.091 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.126 0.874 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.097 0.903 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.827 11.693 9.623 17.529 hybrid contribution 0.329 -0.038 -0.730 0.802 sum -8.498 11.655 8.893 16.945 Atomic orbital electron populations 1.21882 0.99688 0.99475 0.99669 1.21807 0.91160 1.00609 1.03108 1.19227 0.95573 0.89888 0.84066 0.97884 1.21196 0.91214 1.36450 1.04097 0.91809 1.24955 0.97871 0.95712 0.95984 1.69851 1.34727 1.39465 1.09591 0.86670 0.86020 0.78193 0.77159 1.20334 1.21566 1.20362 1.60696 1.38209 1.00714 1.31766 1.21360 0.93705 0.90094 0.96011 0.94121 1.21790 0.99954 0.93058 1.00812 1.20813 0.93072 0.96002 1.02890 1.20159 0.96710 0.81801 0.96228 1.19328 0.91068 0.98058 1.08823 1.21643 0.98762 0.93333 0.88902 1.22024 0.97558 0.95748 1.12324 1.17007 0.84631 0.87065 0.79483 1.90915 1.85600 1.12932 1.55636 1.45477 1.10616 1.05849 1.58727 1.21466 0.83873 1.00388 0.94519 1.22565 0.94567 1.06120 0.95289 1.23156 1.01547 0.94548 1.02389 1.22954 0.99575 0.94750 1.03349 1.20375 0.98919 0.85773 1.03986 0.93915 0.94474 0.94674 0.88243 0.94083 0.93063 0.86167 0.91193 0.90697 0.89659 0.89370 0.84620 0.83696 0.88051 0.89043 0.87393 0.88305 0.88452 0.88483 0.88445 0.90322 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.81 37.16 0.36 -2.31 16 2 C -0.13 -2.82 5.34 -26.74 -0.14 -2.96 16 3 C 0.22 4.99 2.03 -68.87 -0.14 4.85 16 4 H 0.00 0.09 7.35 -51.93 -0.38 -0.29 16 5 C -0.49 -12.46 7.53 -34.44 -0.26 -12.72 16 6 H 0.06 1.62 7.12 -52.49 -0.37 1.25 16 7 C 0.06 1.45 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -24.47 11.29 55.43 0.63 -23.85 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 N -0.68 -12.67 6.17 -100.91 -0.62 -13.29 16 14 C 0.10 1.58 2.53 -67.67 -0.17 1.41 16 15 H 0.04 0.73 7.33 -51.93 -0.38 0.35 16 16 C -0.12 -1.41 5.35 -26.70 -0.14 -1.55 16 17 C -0.09 -0.95 4.36 -28.02 -0.12 -1.07 16 18 C 0.16 2.03 6.53 -81.66 -0.53 1.50 16 19 C -0.17 -2.42 5.72 -104.85 -0.60 -3.02 16 20 C 0.00 -0.06 9.64 -39.35 -0.38 -0.44 16 21 C -0.26 -3.67 10.00 -39.49 -0.40 -4.06 16 22 C 0.52 8.13 7.40 -15.61 -0.12 8.02 16 23 O -0.57 -10.45 16.61 4.87 0.08 -10.36 16 24 N -0.49 -6.55 2.60 -115.17 -0.30 -6.85 16 25 C 0.12 1.26 4.97 -4.04 -0.02 1.24 16 26 C -0.17 -1.59 5.75 -90.62 -0.52 -2.11 16 27 C -0.18 -1.32 8.90 -26.70 -0.24 -1.56 16 28 C -0.17 -1.27 10.26 -26.69 -0.27 -1.55 16 29 C -0.05 -0.85 4.60 -28.05 -0.13 -0.97 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.55 6.40 -51.93 -0.33 0.22 16 33 H 0.10 2.51 5.94 -51.93 -0.31 2.20 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.32 5.39 5.97 -39.29 -0.23 5.15 16 37 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 38 H 0.07 0.90 8.11 -51.92 -0.42 0.48 16 39 H 0.09 0.84 8.04 -51.93 -0.42 0.43 16 40 H 0.09 0.77 4.49 -51.93 -0.23 0.53 16 41 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.10 1.17 7.36 -51.93 -0.38 0.79 16 44 H 0.09 0.77 6.14 -51.93 -0.32 0.45 16 45 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.10 0.63 7.27 -51.93 -0.38 0.25 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 51 H 0.09 1.77 6.78 -51.93 -0.35 1.42 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -29.34 389.34 -11.57 -40.91 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -8.29 Total: 7.94 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -3.91 Total: -15.95 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.30 Total: -43.99 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.34 -11.57 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.844 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds