Wall clock time and date at job start Sat Apr 11 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47154 * 2 1 4 4 H 1.09006 * 109.47171 * 305.73295 * 3 2 1 5 5 C 1.50706 * 109.47181 * 185.73428 * 3 2 1 6 6 H 1.08002 * 119.99580 * 239.99817 * 5 3 2 7 7 C 1.37870 * 120.00033 * 60.00239 * 5 3 2 8 8 N 1.31515 * 120.00221 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00205 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46906 * 59.99475 * 9 7 5 11 11 H 1.48493 * 109.47312 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46688 * 299.99871 * 9 7 5 13 13 N 1.46896 * 109.47075 * 65.73518 * 3 2 1 14 14 C 1.46903 * 111.00205 * 208.30151 * 13 3 2 15 15 H 1.09003 * 109.71274 * 32.74587 * 14 13 3 16 16 C 1.53366 * 109.71879 * 153.34456 * 14 13 3 17 17 C 1.52688 * 108.24571 * 188.72487 * 16 14 13 18 18 C 1.50739 * 110.72305 * 309.08561 * 17 16 14 19 19 C 1.34805 * 122.74316 * 18.06296 * 18 17 16 20 20 C 1.40906 * 119.67494 * 179.35730 * 19 18 17 21 21 C 1.36066 * 119.94516 * 0.29790 * 20 19 18 22 22 C 1.40551 * 118.97300 * 0.08531 * 21 20 19 23 23 O 1.22059 * 120.12111 * 179.78276 * 22 21 20 24 24 N 1.34275 * 119.76028 * 359.81377 * 22 21 20 25 25 C 1.46499 * 119.23028 * 179.88608 * 24 22 21 26 26 C 1.53007 * 109.46920 * 270.01486 * 25 24 22 27 27 C 1.52989 * 117.49852 * 243.74810 * 26 25 24 28 28 C 1.53003 * 117.49711 * 175.08501 * 26 25 24 29 29 C 1.50659 * 122.96932 * 358.96638 * 19 18 17 30 30 H 1.08992 * 109.47389 * 63.39656 * 1 2 3 31 31 H 1.09004 * 109.47122 * 183.39864 * 1 2 3 32 32 H 1.09001 * 109.46811 * 303.39230 * 1 2 3 33 33 H 1.09005 * 109.46707 * 240.00224 * 2 1 3 34 34 H 1.08998 * 109.47392 * 120.00637 * 2 1 3 35 35 H 0.96997 * 120.00300 * 180.02562 * 8 7 5 36 36 H 1.00897 * 111.00171 * 332.25326 * 13 3 2 37 37 H 1.08995 * 109.70999 * 308.41750 * 16 14 13 38 38 H 1.09011 * 109.70587 * 68.99360 * 16 14 13 39 39 H 1.08994 * 109.22609 * 69.40939 * 17 16 14 40 40 H 1.09003 * 109.22796 * 188.81284 * 17 16 14 41 41 H 1.07995 * 120.02681 * 180.27386 * 20 19 18 42 42 H 1.07997 * 120.51454 * 180.11376 * 21 20 19 43 43 H 1.08993 * 109.47101 * 30.01768 * 25 24 22 44 44 H 1.08996 * 109.47413 * 150.01741 * 25 24 22 45 45 H 1.09000 * 115.54727 * 29.42246 * 26 25 24 46 46 H 1.09001 * 117.50043 * 359.97438 * 27 26 25 47 47 H 1.08998 * 117.50129 * 145.02383 * 27 26 25 48 48 H 1.08997 * 117.49505 * 214.97823 * 28 26 25 49 49 H 1.08998 * 117.49528 * 359.97438 * 28 26 25 50 50 H 1.09009 * 109.19124 * 257.50109 * 29 19 18 51 51 H 1.08994 * 109.26559 * 138.14070 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5952 1.9851 -0.8342 5 6 3.5403 1.4448 -0.1420 6 1 4.1549 1.8861 0.6287 7 6 4.1283 0.8837 -1.2557 8 7 3.3799 0.3459 -2.1939 9 14 5.9880 0.8860 -1.4313 10 1 6.5935 0.1463 -0.2948 11 1 6.3655 0.2272 -2.7074 12 1 6.4835 2.2859 -1.4310 13 7 1.6666 2.0938 1.2626 14 6 1.5093 3.5430 1.0810 15 1 1.1327 3.7493 0.0791 16 6 0.5293 4.0921 2.1252 17 6 0.2218 5.5459 1.7743 18 6 1.4953 6.3250 1.5652 19 6 2.6828 5.7317 1.3308 20 6 3.8309 6.5237 1.1310 21 6 3.7375 7.8802 1.1813 22 6 2.4861 8.4675 1.4357 23 8 2.3791 9.6822 1.4894 24 7 1.4089 7.6873 1.6202 25 6 0.1108 8.3116 1.8872 26 6 -0.0692 8.4889 3.3962 27 6 -1.2067 7.7170 4.0675 28 6 -1.3176 9.2317 3.8764 29 6 2.8558 4.2360 1.2779 30 1 -0.3634 0.4602 -0.9188 31 1 -0.3633 -1.0259 0.0609 32 1 -0.3633 0.5656 0.8580 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.7935 -0.0491 -2.9773 36 1 0.8281 1.6845 1.6465 37 1 -0.3905 3.5076 2.1091 38 1 0.9807 4.0399 3.1161 39 1 -0.3720 5.5768 0.8609 40 1 -0.3459 5.9990 2.5870 41 1 4.7844 6.0545 0.9384 42 1 4.6112 8.4962 1.0276 43 1 0.0688 9.2854 1.3993 44 1 -0.6849 7.6760 1.4986 45 1 0.8496 8.6281 3.9660 46 1 -1.8273 7.0831 3.4341 47 1 -1.0367 7.3486 5.0792 48 1 -1.2203 9.8591 4.7623 49 1 -2.0105 9.5944 3.1171 50 1 3.3026 3.8936 2.2114 51 1 3.5161 3.9794 0.4495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:55 Heat of formation + Delta-G solvation = -3.318904 kcal Electronic energy + Delta-G solvation = -29337.375585 eV Core-core repulsion = 25622.492990 eV Total energy + Delta-G solvation = -3714.882595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.72274 -39.66501 -38.58855 -37.89693 -36.02799 -35.46414 -33.90679 -32.32955 -30.99510 -29.42048 -28.73081 -27.76058 -24.92571 -24.65586 -23.82892 -23.27122 -23.11316 -21.55369 -21.30562 -20.72303 -18.67934 -18.36470 -17.99195 -17.25857 -16.93148 -16.69365 -16.47710 -15.82265 -15.58962 -15.50518 -15.08190 -14.93600 -14.79033 -14.55067 -14.28817 -14.10032 -13.93598 -13.77021 -13.49455 -13.31336 -13.05849 -12.98371 -12.77701 -12.75809 -12.50958 -12.40756 -12.30396 -11.98574 -11.92893 -11.82465 -11.53092 -11.45091 -11.39187 -11.11667 -11.04847 -10.91503 -10.84233 -10.76585 -10.33715 -8.93180 -8.80936 -7.98968 -6.08168 -0.15242 0.82243 1.45345 1.46429 1.52659 1.59705 2.48722 2.56967 2.81550 3.26700 3.33007 3.48708 3.64120 3.70655 3.85590 3.94006 3.96167 4.03333 4.12218 4.15568 4.31027 4.41041 4.50194 4.53479 4.56477 4.58181 4.64389 4.65387 4.71021 4.75745 4.79241 4.83822 4.97351 5.00678 5.04554 5.10221 5.15776 5.18332 5.22431 5.25320 5.29090 5.36210 5.43679 5.47837 5.49100 5.69023 5.71496 5.85390 6.01423 6.08726 6.46653 6.64444 6.95006 7.06109 7.13629 7.60164 9.03729 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.003512 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.471958 B = 7970.263312 C = 9553.062886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.228 3.772 4 H -0.030 1.030 5 C -0.497 4.497 6 H 0.058 0.942 7 C 0.009 3.991 8 N -0.922 5.922 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.292 1.292 12 H -0.273 1.273 13 N -0.681 5.681 14 C 0.096 3.904 15 H 0.021 0.979 16 C -0.106 4.106 17 C -0.086 4.086 18 C 0.171 3.829 19 C -0.189 4.189 20 C -0.001 4.001 21 C -0.270 4.270 22 C 0.504 3.496 23 O -0.602 6.602 24 N -0.489 5.489 25 C 0.115 3.885 26 C -0.188 4.188 27 C -0.163 4.163 28 C -0.163 4.163 29 C -0.041 4.041 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.256 0.744 36 H 0.333 0.667 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.110 0.890 50 H 0.074 0.926 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 10.978 11.250 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.120 3.880 4 H -0.012 1.012 5 C -0.535 4.535 6 H 0.076 0.924 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.014 4.014 15 H 0.039 0.961 16 C -0.144 4.144 17 C -0.124 4.124 18 C 0.065 3.935 19 C -0.194 4.194 20 C -0.023 4.023 21 C -0.291 4.291 22 C 0.308 3.692 23 O -0.490 6.490 24 N -0.199 5.199 25 C -0.005 4.005 26 C -0.207 4.207 27 C -0.199 4.199 28 C -0.201 4.201 29 C -0.079 4.079 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.153 0.847 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.106 0.894 44 H 0.140 0.860 45 H 0.100 0.900 46 H 0.137 0.863 47 H 0.121 0.879 48 H 0.117 0.883 49 H 0.128 0.872 50 H 0.092 0.908 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.192 11.699 11.337 19.765 hybrid contribution 1.035 -0.031 -1.221 1.601 sum -10.158 11.668 10.116 18.484 Atomic orbital electron populations 1.21747 0.96241 1.01113 1.00495 1.21638 0.94286 0.99404 1.01081 1.18945 0.93928 0.90389 0.84736 1.01243 1.21517 0.92959 1.35425 1.03644 0.92409 1.25599 1.01327 0.95893 0.96060 1.69989 1.35906 1.40491 1.09938 0.85841 0.82036 0.78223 0.76890 1.19967 1.21748 1.19883 1.60527 1.39215 1.02171 1.29389 1.21396 0.94749 0.88572 0.96677 0.96058 1.21710 0.99662 0.93825 0.99251 1.20941 0.91917 0.94725 1.04806 1.20527 0.97345 0.81807 0.93849 1.19225 0.92138 0.97095 1.10905 1.21746 0.99258 0.93152 0.88150 1.22085 0.97688 0.95995 1.13334 1.17224 0.85596 0.86842 0.79550 1.90885 1.86244 1.14281 1.57605 1.45543 1.11209 1.05853 1.57263 1.21714 0.83074 1.00237 0.95501 1.22385 0.94640 1.09417 0.94231 1.23286 0.99428 0.94560 1.02650 1.23066 0.98049 0.95391 1.03557 1.20129 0.98485 0.87116 1.02183 0.94676 0.92700 0.91928 0.91823 0.94479 0.93466 0.84673 0.88699 0.90131 0.87892 0.86459 0.83704 0.82986 0.89426 0.86044 0.89983 0.86286 0.87906 0.88261 0.87197 0.90797 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.81 71.98 0.71 -3.98 16 2 C -0.13 -5.50 5.34 30.59 0.16 -5.34 16 3 C 0.23 10.47 2.03 44.17 0.09 10.56 16 4 H -0.03 -1.56 7.35 -2.38 -0.02 -1.58 16 5 C -0.50 -25.72 7.53 25.60 0.19 -25.53 16 6 H 0.06 3.00 7.12 -2.91 -0.02 2.98 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -51.75 11.29 21.44 0.24 -51.51 16 9 Si 0.94 43.02 29.54 68.60 2.03 45.04 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 N -0.68 -24.52 6.17 -473.18 -2.92 -27.44 16 14 C 0.10 2.97 2.53 44.94 0.11 3.08 16 15 H 0.02 0.75 7.33 -2.39 -0.02 0.74 16 16 C -0.11 -2.14 5.35 30.61 0.16 -1.98 16 17 C -0.09 -1.48 4.36 29.76 0.13 -1.35 16 18 C 0.17 4.14 6.53 41.04 0.27 4.41 16 19 C -0.19 -5.35 5.72 -20.01 -0.11 -5.47 16 20 C 0.00 -0.03 9.64 22.42 0.22 0.18 16 21 C -0.27 -7.90 10.00 22.33 0.22 -7.68 16 22 C 0.50 16.03 7.40 84.88 0.63 16.66 16 23 O -0.60 -22.75 16.61 -5.51 -0.09 -22.84 16 24 N -0.49 -12.39 2.60 -636.65 -1.65 -14.04 16 25 C 0.12 2.21 4.97 86.38 0.43 2.64 16 26 C -0.19 -3.20 5.75 -10.79 -0.06 -3.27 16 27 C -0.16 -1.75 8.90 30.62 0.27 -1.47 16 28 C -0.16 -2.01 10.26 30.62 0.31 -1.69 16 29 C -0.04 -1.32 4.60 29.74 0.14 -1.18 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.06 1.76 6.40 -2.39 -0.02 1.74 16 33 H 0.06 3.28 5.94 -2.38 -0.01 3.26 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 36 H 0.33 10.33 5.97 -89.70 -0.54 9.80 16 37 H 0.09 1.53 7.97 -2.39 -0.02 1.51 16 38 H 0.08 1.60 8.11 -2.38 -0.02 1.58 16 39 H 0.10 1.55 8.04 -2.39 -0.02 1.53 16 40 H 0.12 1.42 4.49 -2.39 -0.01 1.41 16 41 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 42 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 43 H 0.09 1.95 7.36 -2.39 -0.02 1.93 16 44 H 0.12 1.55 6.14 -2.39 -0.01 1.53 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.12 0.83 7.27 -2.39 -0.02 0.81 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 51 H 0.06 2.27 6.78 -2.39 -0.02 2.25 16 Total: -1.00 -66.91 389.34 2.32 -64.60 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.39 Total: 26.68 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 4.32 Total: -20.49 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -4.33 Total: -92.98 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.09 Total: -22.84 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -66.91 2.32 -64.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.276 kcal (2) G-P(sol) polarization free energy of solvation -66.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds