Wall clock time and date at job start Sat Apr 11 2020 02:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47094 * 2 1 4 4 H 1.08997 * 109.47430 * 54.96574 * 3 2 1 5 5 C 1.50698 * 109.47243 * 174.96866 * 3 2 1 6 6 H 1.08005 * 119.99941 * 120.00234 * 5 3 2 7 7 C 1.37878 * 120.00290 * 299.99834 * 5 3 2 8 8 N 1.31513 * 119.99794 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00197 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47344 * 60.00205 * 9 7 5 11 11 H 1.48498 * 109.47242 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47550 * 300.00093 * 9 7 5 13 13 N 1.46906 * 109.47325 * 294.96905 * 3 2 1 14 14 C 1.46896 * 111.00511 * 154.69613 * 13 3 2 15 15 H 1.08998 * 109.70956 * 34.16525 * 14 13 3 16 16 C 1.53370 * 109.71845 * 154.81406 * 14 13 3 17 17 C 1.52703 * 108.21694 * 188.79693 * 16 14 13 18 18 C 1.50741 * 110.71438 * 309.09927 * 17 16 14 19 19 C 1.34807 * 122.74935 * 17.80101 * 18 17 16 20 20 C 1.40902 * 119.66924 * 179.34264 * 19 18 17 21 21 C 1.36075 * 119.94592 * 0.23941 * 20 19 18 22 22 C 1.40546 * 118.97412 * 0.11077 * 21 20 19 23 23 O 1.22060 * 120.12277 * 179.82750 * 22 21 20 24 24 N 1.34275 * 119.75532 * 359.84772 * 22 21 20 25 25 C 1.46503 * 119.22588 * 179.81356 * 24 22 21 26 26 C 1.53002 * 109.47335 * 270.02782 * 25 24 22 27 27 C 1.52998 * 117.49459 * 243.74832 * 26 25 24 28 28 C 1.53001 * 117.49883 * 175.09033 * 26 25 24 29 29 C 1.50639 * 122.96758 * 359.36394 * 19 18 17 30 30 H 1.09004 * 109.46663 * 176.02111 * 1 2 3 31 31 H 1.09001 * 109.46740 * 296.01672 * 1 2 3 32 32 H 1.09000 * 109.46965 * 56.02318 * 1 2 3 33 33 H 1.09000 * 109.47326 * 239.99867 * 2 1 3 34 34 H 1.08999 * 109.47550 * 119.99972 * 2 1 3 35 35 H 0.97000 * 120.00201 * 179.97438 * 8 7 5 36 36 H 1.00902 * 110.99609 * 278.64976 * 13 3 2 37 37 H 1.09007 * 109.71146 * 308.46314 * 16 14 13 38 38 H 1.08988 * 109.71502 * 69.09372 * 16 14 13 39 39 H 1.09003 * 109.23395 * 188.78560 * 17 16 14 40 40 H 1.08996 * 109.19843 * 69.39547 * 17 16 14 41 41 H 1.07996 * 120.03093 * 180.23737 * 20 19 18 42 42 H 1.08006 * 120.51379 * 180.13275 * 21 20 19 43 43 H 1.09007 * 109.47093 * 30.02089 * 25 24 22 44 44 H 1.08994 * 109.47365 * 150.02298 * 25 24 22 45 45 H 1.09001 * 115.55123 * 29.41147 * 26 25 24 46 46 H 1.08996 * 117.50075 * 359.97438 * 27 26 25 47 47 H 1.08998 * 117.50238 * 145.01807 * 27 26 25 48 48 H 1.09001 * 117.49572 * 214.97556 * 28 26 25 49 49 H 1.08995 * 117.50109 * 359.96837 * 28 26 25 50 50 H 1.08994 * 109.22571 * 257.23345 * 29 19 18 51 51 H 1.08989 * 109.19375 * 137.85026 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6050 1.9817 0.8414 5 6 3.5418 1.4443 0.1246 6 1 4.1475 1.8888 -0.6513 7 6 4.1427 0.8787 1.2291 8 7 3.4052 0.3371 2.1738 9 14 6.0043 0.8804 1.3832 10 1 6.4998 2.2803 1.3829 11 1 6.3965 0.2163 2.6522 12 1 6.5966 0.1454 0.2369 13 7 1.6520 2.0991 -1.2556 14 6 1.5661 3.5554 -1.0835 15 1 2.3211 3.8865 -0.3704 16 6 1.7877 4.2499 -2.4329 17 6 1.9114 5.7511 -2.1825 18 6 0.7611 6.2486 -1.3449 19 6 -0.0180 5.4262 -0.6141 20 6 -1.0681 5.9630 0.1570 21 6 -1.2937 7.3049 0.1569 22 6 -0.4680 8.1340 -0.6217 23 8 -0.6537 9.3403 -0.6398 24 7 0.5256 7.5942 -1.3458 25 6 1.3766 8.4688 -2.1564 26 6 0.7727 8.6150 -3.5546 27 6 1.5837 8.0750 -4.7342 28 6 1.4551 9.5854 -4.5209 29 6 0.1765 3.9329 -0.5750 30 1 -0.3633 -1.0253 -0.0713 31 1 -0.3633 0.4508 0.9236 32 1 -0.3633 0.5743 -0.8522 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8279 -0.0612 2.9507 36 1 2.2892 1.8600 -2.0005 37 1 2.7033 3.8772 -2.8922 38 1 0.9404 4.0550 -3.0902 39 1 1.9126 6.2756 -3.1381 40 1 2.8477 5.9517 -1.6618 41 1 -1.6934 5.3099 0.7476 42 1 -2.0947 7.7263 0.7462 43 1 1.4431 9.4495 -1.6851 44 1 2.3734 8.0350 -2.2347 45 1 -0.3126 8.5302 -3.6092 46 1 2.5476 7.6161 -4.5143 47 1 1.0320 7.6354 -5.5651 48 1 0.8186 10.1387 -5.2115 49 1 2.3338 10.1200 -4.1604 50 1 -0.5769 3.4564 -1.2022 51 1 0.0626 3.5835 0.4511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:44:01 Heat of formation + Delta-G solvation = 6.761399 kcal Electronic energy + Delta-G solvation = -29268.684952 eV Core-core repulsion = 25554.239472 eV Total energy + Delta-G solvation = -3714.445481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.66260 -38.40131 -37.82923 -36.40137 -34.64773 -34.42092 -32.04023 -30.87366 -29.95160 -28.33635 -27.61212 -25.75540 -23.92880 -23.05010 -22.94214 -22.49822 -21.85916 -20.74780 -19.61549 -19.35019 -17.67183 -17.06160 -16.60145 -16.21842 -15.90294 -15.48722 -14.86219 -14.62494 -14.42770 -14.22792 -13.84168 -13.83959 -13.50339 -13.32863 -13.00686 -12.78729 -12.60460 -12.53782 -12.23981 -12.13622 -11.83607 -11.83228 -11.44529 -11.38161 -11.16476 -11.00866 -10.82651 -10.78649 -10.64840 -10.58016 -10.36344 -10.30558 -10.05437 -9.85201 -9.78676 -9.61278 -9.47175 -9.08781 -8.41351 -7.70999 -7.34282 -6.04329 -4.17521 0.89456 1.95288 2.59441 3.23461 3.29757 3.31202 3.44934 3.65040 4.27812 4.34680 4.39951 4.46372 4.59965 4.70161 4.77213 4.91909 4.97369 5.05739 5.12946 5.21857 5.27327 5.31940 5.34101 5.43975 5.46240 5.55810 5.61227 5.71296 5.78288 5.80835 5.87966 5.92752 6.03640 6.08921 6.15361 6.31818 6.37215 6.43544 6.49610 6.54602 6.65868 6.70717 6.78416 7.09112 7.14695 7.18250 7.41023 7.55402 7.73408 8.04579 8.08903 8.10200 8.28601 8.60665 8.95009 9.50418 10.95742 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.003275 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.778461 B = 8546.353858 C = 9189.273652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.684 5.684 14 C 0.092 3.908 15 H 0.053 0.947 16 C -0.114 4.114 17 C -0.093 4.093 18 C 0.166 3.834 19 C -0.173 4.173 20 C -0.006 4.006 21 C -0.255 4.255 22 C 0.515 3.485 23 O -0.565 6.565 24 N -0.495 5.495 25 C 0.118 3.882 26 C -0.167 4.167 27 C -0.179 4.179 28 C -0.168 4.168 29 C -0.050 4.050 30 H 0.023 0.977 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.089 0.911 35 H 0.262 0.738 36 H 0.330 0.670 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 11.742 -10.587 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.314 5.314 14 C -0.019 4.019 15 H 0.071 0.929 16 C -0.152 4.152 17 C -0.131 4.131 18 C 0.060 3.940 19 C -0.178 4.178 20 C -0.028 4.028 21 C -0.276 4.276 22 C 0.318 3.682 23 O -0.449 6.449 24 N -0.206 5.206 25 C -0.003 4.003 26 C -0.186 4.186 27 C -0.216 4.216 28 C -0.206 4.206 29 C -0.088 4.088 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.152 0.848 42 H 0.163 0.837 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.097 0.903 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.787 12.319 -10.307 17.072 hybrid contribution 1.954 0.155 0.387 1.998 sum -3.833 12.474 -9.919 16.391 Atomic orbital electron populations 1.21717 0.99020 0.98472 1.00346 1.21497 0.92095 0.99309 1.01616 1.19158 0.92656 0.91183 0.86128 0.94891 1.21820 0.92790 1.38459 1.05547 0.92982 1.24916 0.97787 0.94983 0.95726 1.69857 1.34902 1.38002 1.09405 0.86750 0.86203 0.78149 0.77420 1.20466 1.21236 1.20292 1.60878 1.55457 1.04940 1.10097 1.21313 0.95581 0.90238 0.94772 0.92916 1.21722 1.02638 0.92001 0.98824 1.20865 0.94977 0.98279 0.98930 1.20208 0.96153 0.81722 0.95915 1.19155 0.98849 0.97211 1.02634 1.21592 0.93467 0.95086 0.92608 1.22016 1.04852 0.93996 1.06776 1.17015 0.81077 0.89010 0.81108 1.90922 1.71742 1.14583 1.67652 1.45501 1.28999 1.06636 1.39473 1.21492 0.93256 0.96173 0.89413 1.22555 0.99518 1.06056 0.90444 1.23163 1.01797 0.96657 1.00008 1.22953 1.02906 0.92647 1.02089 1.20265 0.98510 0.87580 1.02452 0.95746 0.94579 0.93087 0.95179 0.89262 0.92795 0.85318 0.90826 0.90960 0.89353 0.89372 0.84775 0.83670 0.88002 0.88913 0.87415 0.88242 0.88441 0.88478 0.88425 0.90329 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.85 37.16 0.37 -2.29 16 2 C -0.11 -2.40 5.45 -26.73 -0.15 -2.54 16 3 C 0.22 4.90 1.80 -68.86 -0.12 4.77 16 4 H 0.03 0.84 7.32 -51.93 -0.38 0.46 16 5 C -0.55 -13.78 8.29 -34.44 -0.29 -14.06 16 6 H 0.05 1.29 7.74 -52.48 -0.41 0.89 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.02 11.29 55.43 0.63 -23.40 16 9 Si 0.89 20.33 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.68 -12.50 5.45 -100.91 -0.55 -13.05 16 14 C 0.09 1.45 2.32 -67.67 -0.16 1.29 16 15 H 0.05 0.99 7.62 -51.93 -0.40 0.60 16 16 C -0.11 -1.39 5.37 -26.69 -0.14 -1.53 16 17 C -0.09 -1.00 4.35 -28.02 -0.12 -1.13 16 18 C 0.17 2.11 6.53 -81.66 -0.53 1.57 16 19 C -0.17 -2.33 5.71 -104.86 -0.60 -2.93 16 20 C -0.01 -0.07 9.64 -39.35 -0.38 -0.45 16 21 C -0.26 -3.45 10.00 -39.49 -0.40 -3.84 16 22 C 0.52 7.88 7.40 -15.61 -0.12 7.77 16 23 O -0.56 -10.20 16.61 4.86 0.08 -10.12 16 24 N -0.49 -6.42 2.60 -115.17 -0.30 -6.72 16 25 C 0.12 1.26 4.97 -4.04 -0.02 1.24 16 26 C -0.17 -1.59 5.75 -90.62 -0.52 -2.11 16 27 C -0.18 -1.34 8.90 -26.69 -0.24 -1.58 16 28 C -0.17 -1.28 10.25 -26.69 -0.27 -1.55 16 29 C -0.05 -0.73 5.14 -28.06 -0.14 -0.87 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.93 7.65 -51.93 -0.40 0.53 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 2.28 5.95 -51.93 -0.31 1.97 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.33 5.96 7.94 -39.29 -0.31 5.65 16 37 H 0.07 0.87 7.97 -51.92 -0.41 0.46 16 38 H 0.07 0.85 8.10 -51.94 -0.42 0.43 16 39 H 0.09 0.79 4.51 -51.93 -0.23 0.56 16 40 H 0.09 0.94 8.04 -51.93 -0.42 0.53 16 41 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.10 1.18 7.36 -51.92 -0.38 0.80 16 44 H 0.09 0.80 6.14 -51.93 -0.32 0.48 16 45 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.10 0.66 7.27 -51.93 -0.38 0.28 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.07 1.20 7.65 -51.93 -0.40 0.80 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -28.95 394.65 -11.67 -40.62 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.52 Total: 7.97 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -3.93 Total: -16.56 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.22 Total: -43.17 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.95 -11.67 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.381 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds