Wall clock time and date at job start Sat Apr 11 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47094 * 2 1 4 4 H 1.08997 * 109.47430 * 54.96574 * 3 2 1 5 5 C 1.50698 * 109.47243 * 174.96866 * 3 2 1 6 6 H 1.08005 * 119.99941 * 120.00234 * 5 3 2 7 7 C 1.37878 * 120.00290 * 299.99834 * 5 3 2 8 8 N 1.31513 * 119.99794 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00197 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47344 * 60.00205 * 9 7 5 11 11 H 1.48498 * 109.47242 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47550 * 300.00093 * 9 7 5 13 13 N 1.46906 * 109.47325 * 294.96905 * 3 2 1 14 14 C 1.46896 * 111.00511 * 154.69613 * 13 3 2 15 15 H 1.08998 * 109.70956 * 34.16525 * 14 13 3 16 16 C 1.53370 * 109.71845 * 154.81406 * 14 13 3 17 17 C 1.52703 * 108.21694 * 188.79693 * 16 14 13 18 18 C 1.50741 * 110.71438 * 309.09927 * 17 16 14 19 19 C 1.34807 * 122.74935 * 17.80101 * 18 17 16 20 20 C 1.40902 * 119.66924 * 179.34264 * 19 18 17 21 21 C 1.36075 * 119.94592 * 0.23941 * 20 19 18 22 22 C 1.40546 * 118.97412 * 0.11077 * 21 20 19 23 23 O 1.22060 * 120.12277 * 179.82750 * 22 21 20 24 24 N 1.34275 * 119.75532 * 359.84772 * 22 21 20 25 25 C 1.46503 * 119.22588 * 179.81356 * 24 22 21 26 26 C 1.53002 * 109.47335 * 270.02782 * 25 24 22 27 27 C 1.52998 * 117.49459 * 243.74832 * 26 25 24 28 28 C 1.53001 * 117.49883 * 175.09033 * 26 25 24 29 29 C 1.50639 * 122.96758 * 359.36394 * 19 18 17 30 30 H 1.09004 * 109.46663 * 176.02111 * 1 2 3 31 31 H 1.09001 * 109.46740 * 296.01672 * 1 2 3 32 32 H 1.09000 * 109.46965 * 56.02318 * 1 2 3 33 33 H 1.09000 * 109.47326 * 239.99867 * 2 1 3 34 34 H 1.08999 * 109.47550 * 119.99972 * 2 1 3 35 35 H 0.97000 * 120.00201 * 179.97438 * 8 7 5 36 36 H 1.00902 * 110.99609 * 278.64976 * 13 3 2 37 37 H 1.09007 * 109.71146 * 308.46314 * 16 14 13 38 38 H 1.08988 * 109.71502 * 69.09372 * 16 14 13 39 39 H 1.09003 * 109.23395 * 188.78560 * 17 16 14 40 40 H 1.08996 * 109.19843 * 69.39547 * 17 16 14 41 41 H 1.07996 * 120.03093 * 180.23737 * 20 19 18 42 42 H 1.08006 * 120.51379 * 180.13275 * 21 20 19 43 43 H 1.09007 * 109.47093 * 30.02089 * 25 24 22 44 44 H 1.08994 * 109.47365 * 150.02298 * 25 24 22 45 45 H 1.09001 * 115.55123 * 29.41147 * 26 25 24 46 46 H 1.08996 * 117.50075 * 359.97438 * 27 26 25 47 47 H 1.08998 * 117.50238 * 145.01807 * 27 26 25 48 48 H 1.09001 * 117.49572 * 214.97556 * 28 26 25 49 49 H 1.08995 * 117.50109 * 359.96837 * 28 26 25 50 50 H 1.08994 * 109.22571 * 257.23345 * 29 19 18 51 51 H 1.08989 * 109.19375 * 137.85026 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6050 1.9817 0.8414 5 6 3.5418 1.4443 0.1246 6 1 4.1475 1.8888 -0.6513 7 6 4.1427 0.8787 1.2291 8 7 3.4052 0.3371 2.1738 9 14 6.0043 0.8804 1.3832 10 1 6.4998 2.2803 1.3829 11 1 6.3965 0.2163 2.6522 12 1 6.5966 0.1454 0.2369 13 7 1.6520 2.0991 -1.2556 14 6 1.5661 3.5554 -1.0835 15 1 2.3211 3.8865 -0.3704 16 6 1.7877 4.2499 -2.4329 17 6 1.9114 5.7511 -2.1825 18 6 0.7611 6.2486 -1.3449 19 6 -0.0180 5.4262 -0.6141 20 6 -1.0681 5.9630 0.1570 21 6 -1.2937 7.3049 0.1569 22 6 -0.4680 8.1340 -0.6217 23 8 -0.6537 9.3403 -0.6398 24 7 0.5256 7.5942 -1.3458 25 6 1.3766 8.4688 -2.1564 26 6 0.7727 8.6150 -3.5546 27 6 1.5837 8.0750 -4.7342 28 6 1.4551 9.5854 -4.5209 29 6 0.1765 3.9329 -0.5750 30 1 -0.3633 -1.0253 -0.0713 31 1 -0.3633 0.4508 0.9236 32 1 -0.3633 0.5743 -0.8522 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8279 -0.0612 2.9507 36 1 2.2892 1.8600 -2.0005 37 1 2.7033 3.8772 -2.8922 38 1 0.9404 4.0550 -3.0902 39 1 1.9126 6.2756 -3.1381 40 1 2.8477 5.9517 -1.6618 41 1 -1.6934 5.3099 0.7476 42 1 -2.0947 7.7263 0.7462 43 1 1.4431 9.4495 -1.6851 44 1 2.3734 8.0350 -2.2347 45 1 -0.3126 8.5302 -3.6092 46 1 2.5476 7.6161 -4.5143 47 1 1.0320 7.6354 -5.5651 48 1 0.8186 10.1387 -5.2115 49 1 2.3338 10.1200 -4.1604 50 1 -0.5769 3.4564 -1.2022 51 1 0.0626 3.5835 0.4511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:59 Heat of formation + Delta-G solvation = -7.493101 kcal Electronic energy + Delta-G solvation = -29269.303074 eV Core-core repulsion = 25554.239472 eV Total energy + Delta-G solvation = -3715.063602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.72260 -39.62881 -38.59341 -37.81751 -36.02383 -35.45788 -33.82381 -32.38054 -31.04284 -29.56093 -28.72603 -27.43113 -25.04337 -24.60810 -23.84482 -23.24747 -23.08912 -21.56746 -21.20438 -20.68156 -18.70622 -18.57074 -18.04133 -17.27039 -16.94091 -16.73283 -16.43516 -15.71165 -15.52042 -15.42425 -15.07886 -14.90739 -14.78010 -14.59465 -14.33261 -13.93681 -13.84292 -13.79712 -13.50971 -13.14878 -13.08571 -13.04053 -12.88706 -12.79027 -12.50899 -12.40672 -12.32948 -12.05141 -11.87033 -11.80205 -11.49854 -11.46219 -11.35145 -11.16354 -11.05513 -10.91740 -10.89179 -10.74790 -10.38820 -8.97269 -8.81525 -7.99902 -6.21461 -0.13944 0.82347 1.41276 1.42897 1.48931 1.59555 2.43417 2.57538 2.80119 3.20040 3.32807 3.50005 3.63722 3.70201 3.85475 3.93283 3.95434 4.03391 4.11590 4.15942 4.32913 4.41204 4.50024 4.51323 4.56081 4.64854 4.69773 4.72354 4.76173 4.83401 4.86687 4.96229 4.99311 5.01741 5.05015 5.08534 5.16632 5.21213 5.23762 5.28437 5.31109 5.43539 5.46018 5.51452 5.60507 5.65671 5.73188 5.87112 6.09457 6.19502 6.29894 6.47845 6.93315 6.95517 7.12813 7.50407 8.95737 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.003275 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.778461 B = 8546.353858 C = 9189.273652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.227 3.773 4 H 0.001 0.999 5 C -0.555 4.555 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.673 5.673 14 C 0.090 3.910 15 H 0.021 0.979 16 C -0.103 4.103 17 C -0.088 4.088 18 C 0.171 3.829 19 C -0.188 4.188 20 C 0.002 3.998 21 C -0.269 4.269 22 C 0.502 3.498 23 O -0.603 6.603 24 N -0.490 5.490 25 C 0.115 3.885 26 C -0.185 4.185 27 C -0.164 4.164 28 C -0.163 4.163 29 C -0.039 4.039 30 H 0.040 0.960 31 H 0.028 0.972 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.259 0.741 36 H 0.334 0.666 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.087 0.913 44 H 0.117 0.883 45 H 0.085 0.915 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.108 0.892 50 H 0.085 0.915 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 11.931 -12.795 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.118 3.882 4 H 0.019 0.981 5 C -0.594 4.594 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.303 5.303 14 C -0.020 4.020 15 H 0.039 0.961 16 C -0.142 4.142 17 C -0.126 4.126 18 C 0.065 3.935 19 C -0.193 4.193 20 C -0.020 4.020 21 C -0.291 4.291 22 C 0.306 3.694 23 O -0.491 6.491 24 N -0.199 5.199 25 C -0.006 4.006 26 C -0.204 4.204 27 C -0.201 4.201 28 C -0.200 4.200 29 C -0.077 4.077 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.151 0.849 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.106 0.894 44 H 0.135 0.865 45 H 0.103 0.897 46 H 0.133 0.867 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.126 0.874 50 H 0.104 0.896 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.932 12.505 -12.544 18.387 hybrid contribution 1.698 0.092 1.053 2.000 sum -3.234 12.598 -11.491 17.355 Atomic orbital electron populations 1.21574 0.96443 0.99733 1.00545 1.21366 0.94390 0.98719 0.99807 1.18869 0.91162 0.91269 0.86922 0.98136 1.22211 0.94328 1.37575 1.05311 0.92783 1.25619 1.01547 0.95069 0.95747 1.70000 1.36269 1.39005 1.09827 0.85842 0.81777 0.78124 0.77245 1.20074 1.21541 1.19612 1.60782 1.54915 1.06431 1.08124 1.21342 0.95335 0.88854 0.96485 0.96108 1.21642 1.03716 0.92309 0.96489 1.20925 0.94255 0.97456 0.99925 1.20503 0.96155 0.81457 0.95423 1.19153 0.99792 0.96681 1.03654 1.21760 0.93175 0.94958 0.92059 1.22102 1.05378 0.94231 1.07348 1.17317 0.81738 0.88753 0.81564 1.90890 1.73011 1.16013 1.69198 1.45551 1.28484 1.07007 1.38895 1.21692 0.94027 0.95319 0.89570 1.22379 0.98496 1.09057 0.90494 1.23274 1.01796 0.96503 0.98517 1.23064 1.02883 0.93108 1.00989 1.20086 0.97943 0.88425 1.01254 0.94102 0.95247 0.91757 0.95352 0.92593 0.93141 0.84874 0.89689 0.89766 0.86677 0.88635 0.82795 0.82773 0.89434 0.86478 0.89694 0.86663 0.87774 0.88078 0.87362 0.89634 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.85 71.98 0.71 -4.01 16 2 C -0.10 -4.70 5.45 30.59 0.17 -4.53 16 3 C 0.23 10.32 1.80 44.17 0.08 10.40 16 4 H 0.00 0.04 7.32 -2.39 -0.02 0.02 16 5 C -0.55 -27.99 8.29 25.60 0.21 -27.78 16 6 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 7 C 0.02 1.05 5.29 84.66 0.45 1.50 16 8 N -0.91 -50.61 11.29 21.45 0.24 -50.37 16 9 Si 0.94 41.65 29.54 68.60 2.03 43.68 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.67 -23.93 5.45 -473.17 -2.58 -26.51 16 14 C 0.09 2.76 2.32 44.95 0.10 2.87 16 15 H 0.02 0.78 7.62 -2.39 -0.02 0.76 16 16 C -0.10 -2.23 5.37 30.62 0.16 -2.07 16 17 C -0.09 -1.65 4.35 29.76 0.13 -1.52 16 18 C 0.17 4.08 6.53 41.04 0.27 4.35 16 19 C -0.19 -4.87 5.71 -20.02 -0.11 -4.99 16 20 C 0.00 0.05 9.64 22.42 0.22 0.27 16 21 C -0.27 -7.28 10.00 22.33 0.22 -7.06 16 22 C 0.50 15.49 7.40 84.88 0.63 16.11 16 23 O -0.60 -22.40 16.61 -5.51 -0.09 -22.49 16 24 N -0.49 -12.30 2.60 -636.64 -1.65 -13.96 16 25 C 0.11 2.28 4.97 86.38 0.43 2.71 16 26 C -0.19 -3.24 5.75 -10.79 -0.06 -3.30 16 27 C -0.16 -1.92 8.90 30.62 0.27 -1.64 16 28 C -0.16 -2.11 10.25 30.62 0.31 -1.79 16 29 C -0.04 -1.10 5.14 29.73 0.15 -0.95 16 30 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 2.22 7.65 -2.39 -0.02 2.21 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 2.92 5.95 -2.39 -0.01 2.90 16 35 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 36 H 0.33 11.49 7.94 -89.69 -0.71 10.78 16 37 H 0.08 1.70 7.97 -2.38 -0.02 1.68 16 38 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.12 1.59 4.51 -2.39 -0.01 1.58 16 40 H 0.10 1.74 8.04 -2.39 -0.02 1.72 16 41 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 42 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 43 H 0.09 2.01 7.36 -2.38 -0.02 1.99 16 44 H 0.12 1.69 6.14 -2.39 -0.01 1.68 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.12 1.00 7.27 -2.39 -0.02 0.99 16 47 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.05 1.74 7.65 -2.39 -0.02 1.73 16 Total: -1.00 -64.23 394.65 2.50 -61.74 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.21 Total: 29.32 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.34 Total: -21.42 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -3.99 Total: -90.83 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.09 Total: -22.49 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -64.23 2.50 -61.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.246 kcal (2) G-P(sol) polarization free energy of solvation -64.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds