Wall clock time and date at job start Sat Apr 11 2020 02:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47263 * 2 1 4 4 H 1.09002 * 109.46983 * 55.33377 * 3 2 1 5 5 C 1.50699 * 109.47419 * 175.33719 * 3 2 1 6 6 H 1.07993 * 120.00064 * 119.99484 * 5 3 2 7 7 C 1.37878 * 119.99560 * 300.00236 * 5 3 2 8 8 N 1.31510 * 120.00527 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99820 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47213 * 59.99380 * 9 7 5 11 11 H 1.48497 * 109.47273 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47138 * 299.99730 * 9 7 5 13 13 N 1.46903 * 109.46702 * 295.33465 * 3 2 1 14 14 C 1.46900 * 110.99803 * 152.25518 * 13 3 2 15 15 H 1.09002 * 109.74257 * 328.02776 * 14 13 3 16 16 C 1.53364 * 109.71349 * 207.41544 * 14 13 3 17 17 C 1.52684 * 108.25772 * 171.34488 * 16 14 13 18 18 C 1.50741 * 110.71959 * 50.98913 * 17 16 14 19 19 C 1.34811 * 122.73644 * 341.85452 * 18 17 16 20 20 C 1.40911 * 119.66925 * 181.35935 * 19 18 17 21 21 C 1.36068 * 119.93986 * 359.40685 * 20 19 18 22 22 C 1.40548 * 118.97502 * 359.88845 * 21 20 19 23 23 O 1.22064 * 120.11810 * 180.18600 * 22 21 20 24 24 N 1.34274 * 119.76319 * 0.20400 * 22 21 20 25 25 C 1.46496 * 119.23044 * 180.14162 * 24 22 21 26 26 C 1.52998 * 109.47547 * 89.99917 * 25 24 22 27 27 C 1.52998 * 117.49976 * 174.99917 * 26 25 24 28 28 C 1.52999 * 60.03375 * 107.49704 * 27 26 25 29 29 C 1.50632 * 122.95212 * 1.52971 * 19 18 17 30 30 H 1.08997 * 109.47328 * 58.07446 * 1 2 3 31 31 H 1.09008 * 109.47247 * 178.07329 * 1 2 3 32 32 H 1.09002 * 109.47247 * 298.07360 * 1 2 3 33 33 H 1.09003 * 109.47183 * 239.99946 * 2 1 3 34 34 H 1.09002 * 109.47315 * 119.99921 * 2 1 3 35 35 H 0.96999 * 120.00480 * 180.02562 * 8 7 5 36 36 H 1.00897 * 111.00172 * 28.30093 * 13 3 2 37 37 H 1.08996 * 109.70350 * 51.65446 * 16 14 13 38 38 H 1.09001 * 109.70175 * 291.03843 * 16 14 13 39 39 H 1.08996 * 109.23015 * 290.66865 * 17 16 14 40 40 H 1.08997 * 109.19419 * 171.28172 * 17 16 14 41 41 H 1.07997 * 120.02712 * 179.38224 * 20 19 18 42 42 H 1.08001 * 120.51225 * 179.90396 * 21 20 19 43 43 H 1.09001 * 109.47177 * 329.99455 * 25 24 22 44 44 H 1.09000 * 109.46700 * 209.99696 * 25 24 22 45 45 H 1.09003 * 115.56211 * 29.30783 * 26 25 24 46 46 H 1.08995 * 117.49967 * 0.02562 * 27 26 25 47 47 H 1.09001 * 117.50020 * 214.99758 * 27 26 25 48 48 H 1.09006 * 117.49682 * 107.47222 * 28 27 26 49 49 H 1.08993 * 117.50320 * 252.47533 * 28 27 26 50 50 H 1.08998 * 109.22800 * 102.40707 * 29 19 18 51 51 H 1.09003 * 109.22549 * 221.75690 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6100 1.9799 0.8453 5 6 3.5425 1.4441 0.1155 6 1 4.1435 1.8901 -0.6631 7 6 4.1499 0.8760 1.2152 8 7 3.4181 0.3332 2.1635 9 14 6.0124 0.8786 1.3588 10 1 6.5070 2.2789 1.3591 11 1 6.4123 0.2126 2.6244 12 1 6.5987 0.1469 0.2072 13 7 1.6444 2.1016 -1.2518 14 6 1.5033 3.5514 -1.0616 15 1 1.1637 3.7583 -0.0467 16 6 0.4910 4.1093 -2.0696 17 6 0.2068 5.5648 -1.7063 18 6 1.4925 6.3347 -1.5433 19 6 2.6834 5.7327 -1.3516 20 6 3.8413 6.5166 -1.1782 21 6 3.7546 7.8740 -1.2170 22 6 2.5003 8.4702 -1.4336 23 8 2.3991 9.6859 -1.4757 24 7 1.4138 7.6976 -1.5937 25 6 0.1128 8.3312 -1.8219 26 6 -0.1068 8.5185 -3.3244 27 6 -1.4640 9.0601 -3.7778 28 6 -0.2229 9.9520 -3.8487 29 6 2.8484 4.2359 -1.3154 30 1 -0.3634 0.5434 -0.8722 31 1 -0.3634 -1.0271 -0.0346 32 1 -0.3634 0.4836 0.9068 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8455 -0.0662 2.9374 36 1 0.7943 1.7007 -1.6187 37 1 -0.4320 3.5315 -2.0216 38 1 0.9068 4.0560 -3.0758 39 1 -0.3530 5.5988 -0.7717 40 1 -0.3875 6.0221 -2.4974 41 1 4.7967 6.0406 -1.0143 42 1 4.6359 8.4838 -1.0837 43 1 0.0900 9.3024 -1.3274 44 1 -0.6759 7.6980 -1.4156 45 1 0.3827 7.7860 -3.9662 46 1 -2.2002 9.2833 -3.0058 47 1 -1.8675 8.6836 -4.7178 48 1 0.1904 10.1619 -4.8353 49 1 -0.1429 10.7618 -3.1235 50 1 3.2612 3.8971 -2.2656 51 1 3.5348 3.9698 -0.5115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:44:13 Heat of formation + Delta-G solvation = 11.768143 kcal Electronic energy + Delta-G solvation = -29227.904553 eV Core-core repulsion = 25513.676181 eV Total energy + Delta-G solvation = -3714.228372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.59598 -38.40816 -37.69400 -36.47672 -34.64785 -34.45203 -32.06557 -30.89903 -29.81876 -28.19929 -27.57800 -26.11282 -23.81249 -22.99036 -22.61122 -22.58213 -21.93637 -20.84030 -19.72528 -19.38594 -17.46797 -17.12158 -16.36338 -16.08470 -15.85786 -15.48061 -14.83192 -14.71702 -14.34700 -14.21503 -13.91825 -13.79453 -13.54841 -13.37796 -12.99058 -12.73596 -12.65129 -12.52628 -12.27788 -12.05250 -11.90331 -11.78733 -11.74678 -11.25796 -11.08577 -10.95313 -10.84101 -10.74118 -10.66956 -10.58327 -10.31283 -10.28183 -9.91436 -9.81961 -9.74498 -9.66533 -9.48869 -9.07191 -8.36048 -7.64347 -7.31877 -5.98782 -4.02376 0.94651 2.02574 2.63470 3.31905 3.37272 3.39652 3.49657 3.72001 4.29126 4.40822 4.43143 4.51762 4.66871 4.73619 4.87807 4.90221 4.98834 5.06371 5.15579 5.28407 5.29293 5.33462 5.36696 5.43157 5.49817 5.62080 5.64325 5.69871 5.81809 5.83478 5.87960 5.92689 6.03404 6.10193 6.12672 6.13155 6.21429 6.35895 6.38881 6.54626 6.61582 6.70714 6.79825 6.95646 7.03815 7.14302 7.23697 7.46015 7.75156 7.89840 8.15064 8.27408 8.37148 8.71239 9.04657 9.62374 11.06634 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.003364 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.984838 B = 8321.541649 C = 9812.027169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.491 4.491 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.099 3.901 15 H 0.043 0.957 16 C -0.119 4.119 17 C -0.085 4.085 18 C 0.153 3.847 19 C -0.167 4.167 20 C -0.006 4.006 21 C -0.254 4.254 22 C 0.517 3.483 23 O -0.565 6.565 24 N -0.495 5.495 25 C 0.119 3.881 26 C -0.172 4.172 27 C -0.172 4.172 28 C -0.167 4.167 29 C -0.053 4.053 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.099 0.901 35 H 0.259 0.741 36 H 0.320 0.680 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.079 0.921 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 11.595 -9.274 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.530 4.530 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.203 1.203 13 N -0.314 5.314 14 C -0.012 4.012 15 H 0.061 0.939 16 C -0.158 4.158 17 C -0.124 4.124 18 C 0.048 3.952 19 C -0.172 4.172 20 C -0.027 4.027 21 C -0.276 4.276 22 C 0.319 3.681 23 O -0.449 6.449 24 N -0.207 5.207 25 C -0.002 4.002 26 C -0.191 4.191 27 C -0.210 4.210 28 C -0.204 4.204 29 C -0.091 4.091 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.126 0.874 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.097 0.903 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.707 12.319 -9.344 17.745 hybrid contribution 0.353 -0.072 0.723 0.808 sum -8.354 12.247 -8.621 17.149 Atomic orbital electron populations 1.21886 0.99701 0.99533 0.99633 1.21802 0.91129 1.00593 1.03117 1.19229 0.95468 0.89831 0.84219 0.97913 1.21194 0.91107 1.36180 1.04518 0.91801 1.24955 0.97935 0.95702 0.95918 1.69849 1.34836 1.39219 1.09727 0.86670 0.86024 0.78185 0.77163 1.20367 1.21563 1.20326 1.60700 1.36881 1.00777 1.33067 1.21432 0.93506 0.90046 0.96174 0.93939 1.21816 0.99908 0.93087 1.00945 1.20727 0.92731 0.95982 1.02911 1.20179 0.96729 0.81802 0.96500 1.19326 0.90873 0.98038 1.08984 1.21643 0.98806 0.93396 0.88894 1.22031 0.97481 0.95670 1.12387 1.16985 0.84596 0.87154 0.79342 1.90906 1.85941 1.12845 1.55186 1.45465 1.10173 1.05778 1.59260 1.21476 0.83683 1.00294 0.94795 1.22585 1.01782 0.98876 0.95845 1.22974 0.90775 1.04098 1.03128 1.23024 1.01091 0.93429 1.02843 1.20434 0.99060 0.85780 1.03799 0.94623 0.94454 0.93937 0.94052 0.88286 0.93059 0.86151 0.91170 0.90735 0.89511 0.89732 0.84646 0.83726 0.88373 0.88800 0.87429 0.88508 0.88461 0.88854 0.88278 0.90288 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.78 37.15 0.36 -2.32 16 2 C -0.13 -2.81 5.34 -26.73 -0.14 -2.96 16 3 C 0.22 4.99 2.04 -68.86 -0.14 4.85 16 4 H 0.00 0.08 7.35 -51.93 -0.38 -0.30 16 5 C -0.49 -12.47 7.57 -34.44 -0.26 -12.74 16 6 H 0.06 1.62 7.05 -52.49 -0.37 1.25 16 7 C 0.06 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -24.49 11.30 55.43 0.63 -23.86 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -12.68 6.16 -100.73 -0.62 -13.30 16 14 C 0.10 1.58 2.56 -67.50 -0.17 1.41 16 15 H 0.04 0.76 7.32 -51.93 -0.38 0.38 16 16 C -0.12 -1.42 5.34 -26.71 -0.14 -1.56 16 17 C -0.09 -0.90 4.36 -28.03 -0.12 -1.02 16 18 C 0.15 1.98 6.53 -81.66 -0.53 1.44 16 19 C -0.17 -2.40 5.71 -104.86 -0.60 -3.00 16 20 C -0.01 -0.08 9.64 -39.35 -0.38 -0.46 16 21 C -0.25 -3.66 10.00 -39.49 -0.40 -4.05 16 22 C 0.52 8.12 7.40 -15.61 -0.12 8.01 16 23 O -0.56 -10.29 16.61 4.86 0.08 -10.21 16 24 N -0.49 -6.52 2.60 -115.18 -0.30 -6.82 16 25 C 0.12 1.26 4.94 -4.04 -0.02 1.24 16 26 C -0.17 -1.65 5.35 -90.58 -0.48 -2.13 16 27 C -0.17 -1.28 10.25 -26.73 -0.27 -1.55 16 28 C -0.17 -1.55 10.18 -26.69 -0.27 -1.82 16 29 C -0.05 -0.85 4.63 -27.90 -0.13 -0.97 16 30 H 0.03 0.56 6.37 -51.93 -0.33 0.23 16 31 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 2.50 5.96 -51.93 -0.31 2.19 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.32 5.39 5.91 -39.29 -0.23 5.16 16 37 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.46 16 39 H 0.09 0.85 8.05 -51.93 -0.42 0.44 16 40 H 0.08 0.73 6.44 -51.93 -0.33 0.39 16 41 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.10 1.13 7.09 -51.93 -0.37 0.76 16 44 H 0.09 0.78 6.38 -51.93 -0.33 0.45 16 45 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.10 0.98 8.03 -51.93 -0.42 0.57 16 50 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.09 1.76 6.73 -51.93 -0.35 1.41 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -29.24 392.75 -11.65 -40.89 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -8.42 Total: 8.04 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.91 Total: -16.25 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.29 Total: -43.98 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.24 -11.65 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.656 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds