Wall clock time and date at job start Sat Apr 11 2020 02:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47146 * 2 1 4 4 H 1.09000 * 109.47484 * 177.68391 * 3 2 1 5 5 C 1.50709 * 109.46870 * 297.68341 * 3 2 1 6 6 H 1.07994 * 120.00041 * 119.99918 * 5 3 2 7 7 C 1.37874 * 119.99786 * 300.00198 * 5 3 2 8 8 N 1.31516 * 120.00238 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99829 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47125 * 59.99841 * 9 7 5 11 11 H 1.48504 * 109.46795 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46941 * 299.99623 * 9 7 5 13 13 N 1.46901 * 109.47364 * 57.67961 * 3 2 1 14 14 C 1.44758 * 110.99496 * 62.52790 * 13 3 2 15 15 C 1.54408 * 109.83052 * 217.75688 * 14 13 3 16 16 N 1.47776 * 111.34297 * 320.29220 * 15 14 13 17 17 C 1.34778 * 118.54711 * 137.98879 * 16 15 14 18 18 O 1.21510 * 119.99921 * 359.73250 * 17 16 15 19 19 O 1.34640 * 120.00070 * 179.73306 * 17 16 15 20 20 C 1.45204 * 117.00264 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.46922 * 59.99993 * 20 19 17 22 22 C 1.52995 * 109.46796 * 300.00047 * 20 19 17 23 23 C 1.52995 * 109.47166 * 180.02562 * 20 19 17 24 24 C 1.44677 * 122.90865 * 317.70911 * 16 15 14 25 25 C 1.54947 * 109.51857 * 89.35669 * 24 16 15 26 26 H 1.08998 * 109.42385 * 50.60846 * 25 24 16 27 27 F 1.39901 * 109.42329 * 170.44080 * 25 24 16 28 28 C 1.46260 * 111.00153 * 186.02217 * 13 3 2 29 29 H 1.09001 * 109.46910 * 185.32534 * 1 2 3 30 30 H 1.09002 * 109.47244 * 305.32309 * 1 2 3 31 31 H 1.09001 * 109.47400 * 65.32327 * 1 2 3 32 32 H 1.09000 * 109.47434 * 239.99666 * 2 1 3 33 33 H 1.09003 * 109.46937 * 119.99326 * 2 1 3 34 34 H 0.96996 * 120.00443 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.44066 * 337.92301 * 14 13 3 36 36 H 1.09005 * 109.43760 * 97.84224 * 14 13 3 37 37 H 1.08999 * 109.27059 * 199.75085 * 15 14 13 38 38 H 1.09005 * 109.07150 * 80.69170 * 15 14 13 39 39 H 1.09006 * 109.46969 * 300.00169 * 21 20 19 40 40 H 1.08992 * 109.47122 * 60.00048 * 21 20 19 41 41 H 1.08995 * 109.46734 * 180.02562 * 21 20 19 42 42 H 1.09007 * 109.47038 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.47515 * 299.99908 * 22 20 19 44 44 H 1.09004 * 109.47691 * 60.00034 * 22 20 19 45 45 H 1.08999 * 109.47459 * 299.99947 * 23 20 19 46 46 H 1.08999 * 109.47492 * 60.00065 * 23 20 19 47 47 H 1.08998 * 109.46830 * 180.02562 * 23 20 19 48 48 H 1.08993 * 109.46721 * 209.37820 * 24 16 15 49 49 H 1.09003 * 109.45743 * 329.34679 * 24 16 15 50 50 H 1.09006 * 108.50572 * 27.29016 * 28 13 3 51 51 H 1.09002 * 108.50623 * 269.82973 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0415 5 6 1.5851 2.1361 -1.2583 6 1 0.9611 3.0152 -1.1948 7 6 1.9655 1.6482 -2.4904 8 7 2.7249 0.5773 -2.5677 9 14 1.4022 2.5084 -4.0500 10 1 1.8977 3.9082 -4.0498 11 1 1.9422 1.7916 -5.2332 12 1 -0.0818 2.5085 -4.1068 13 7 1.5051 2.1510 1.1704 14 6 1.9709 1.5463 2.4004 15 6 0.8423 1.5659 3.4539 16 7 0.0844 2.8336 3.4067 17 6 -1.2583 2.7857 3.5136 18 8 -1.8198 1.7157 3.6406 19 8 -1.9774 3.9235 3.4796 20 6 -3.4188 3.7962 3.5998 21 6 -3.7626 3.1323 4.9347 22 6 -3.9524 2.9382 2.4510 23 6 -4.0601 5.1840 3.5396 24 6 0.7203 4.1245 3.2566 25 6 0.8574 4.4621 1.7506 26 1 -0.1062 4.3263 1.2595 27 9 1.2681 5.7918 1.6074 28 6 1.8551 3.5705 1.1289 29 1 -0.3633 -1.0232 0.0954 30 1 -0.3634 0.5942 0.8385 31 1 -0.3634 0.4290 -0.9338 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.9929 0.2342 -3.4345 35 1 2.2695 0.5158 2.2076 36 1 2.8257 2.1068 2.7792 37 1 1.2752 1.4467 4.4471 38 1 0.1613 0.7367 3.2618 39 1 -3.3057 2.1435 4.9770 40 1 -3.3824 3.7435 5.7530 41 1 -4.8446 3.0363 5.0246 42 1 -5.0345 2.8422 2.5414 43 1 -3.7075 3.4111 1.5000 44 1 -3.4956 1.9494 2.4933 45 1 -3.6800 5.7957 4.3578 46 1 -3.8152 5.6566 2.5885 47 1 -5.1421 5.0884 3.6303 48 1 0.1145 4.8869 3.7461 49 1 1.7093 4.0974 3.7142 50 1 1.9810 3.8655 0.0871 51 1 2.8077 3.7072 1.6408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:16 Heat of formation + Delta-G solvation = -114.051102 kcal Electronic energy + Delta-G solvation = -31990.918640 eV Core-core repulsion = 27840.465111 eV Total energy + Delta-G solvation = -4150.453529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.35399 -40.72987 -38.71385 -36.97761 -35.46116 -33.91083 -32.96310 -31.95788 -30.74595 -28.11834 -27.44416 -27.33143 -26.00152 -25.83784 -23.15031 -23.02515 -20.86421 -20.81275 -19.24947 -18.78380 -17.70755 -16.94696 -16.48971 -16.15965 -15.84217 -15.54054 -15.22765 -14.84051 -14.68354 -14.28288 -14.01661 -13.82640 -13.63685 -13.37189 -13.15870 -12.94456 -12.56953 -12.43684 -12.32470 -12.18177 -11.97324 -11.89863 -11.89071 -11.79350 -11.58453 -11.34620 -11.24593 -10.99890 -10.89776 -10.85679 -10.61134 -10.34513 -10.24529 -10.07591 -10.02296 -9.78276 -9.69600 -9.43474 -8.89796 -8.50833 -8.44341 -7.34697 -6.07169 -4.11323 2.30919 3.06841 3.29059 3.33725 3.37012 3.89039 4.35219 4.60121 4.72457 4.75434 4.81478 4.91085 4.95382 5.22736 5.29043 5.37103 5.41670 5.46825 5.47836 5.53048 5.61466 5.64187 5.72454 5.76604 5.86935 5.88789 5.95428 5.97831 6.04779 6.19796 6.26817 6.32553 6.41809 6.43800 6.59790 6.61964 6.68240 6.72274 6.77973 7.14507 7.24836 7.33642 7.53920 7.60072 7.71580 7.76158 8.04176 8.26154 8.48853 8.56385 8.92064 9.52952 10.98850 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004286 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.834890 B = 6531.657521 C = 6600.241870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.221 3.779 4 H 0.001 0.999 5 C -0.503 4.503 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.517 5.517 14 C 0.035 3.965 15 C 0.136 3.864 16 N -0.568 5.568 17 C 0.652 3.348 18 O -0.568 6.568 19 O -0.364 6.364 20 C 0.136 3.864 21 C -0.182 4.182 22 C -0.183 4.183 23 C -0.140 4.140 24 C 0.100 3.900 25 C 0.084 3.916 26 H 0.088 0.912 27 F -0.212 7.212 28 C 0.025 3.975 29 H 0.014 0.986 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.034 0.966 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.104 0.896 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 5.823 13.834 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.542 4.542 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.241 5.241 14 C -0.095 4.095 15 C 0.015 3.985 16 N -0.306 5.306 17 C 0.407 3.593 18 O -0.457 6.457 19 O -0.279 6.279 20 C 0.099 3.901 21 C -0.239 4.239 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.026 4.026 25 C 0.045 3.955 26 H 0.106 0.894 27 F -0.194 7.194 28 C -0.104 4.104 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.122 0.878 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.251 5.373 13.704 16.875 hybrid contribution 0.605 0.582 -0.976 1.287 sum -7.646 5.955 12.728 15.998 Atomic orbital electron populations 1.21444 0.97080 0.97419 1.01806 1.21597 0.95299 0.97774 1.00085 1.19331 0.92453 0.90833 0.85803 0.98185 1.20989 1.31450 1.12011 0.89723 0.92064 1.24862 0.95012 0.94975 0.98914 1.69850 1.35864 1.22294 1.24802 0.86646 0.79124 0.79629 0.82580 1.20294 1.21332 1.20231 1.60705 1.60693 1.00360 1.02349 1.22512 0.94145 1.01467 0.91349 1.22187 0.94347 0.84222 0.97737 1.46262 1.02494 1.07745 1.74134 1.18036 0.82804 0.82291 0.76134 1.90858 1.69811 1.29496 1.55572 1.86310 1.21383 1.33904 1.86263 1.21999 0.75152 0.96691 0.96219 1.22505 1.02343 1.03358 0.95667 1.22502 1.01429 1.02621 0.97470 1.21845 1.00123 0.94406 1.03349 1.22000 0.99523 0.85107 0.95923 1.21250 1.00481 0.76960 0.96787 0.89402 1.92775 1.92634 1.37059 1.96884 1.21437 0.94631 0.90303 1.03990 0.96639 0.93277 0.92971 0.88820 0.96723 0.92840 0.89333 0.94770 0.92135 0.88560 0.89322 0.92481 0.91447 0.91562 0.91982 0.89146 0.91707 0.91384 0.90412 0.89308 0.89991 0.87808 0.95234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.50 37.16 0.35 -2.27 16 2 C -0.11 -2.48 5.25 -26.73 -0.14 -2.62 16 3 C 0.22 5.12 1.68 -68.86 -0.12 5.01 16 4 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 5 C -0.50 -12.87 6.39 -34.44 -0.22 -13.09 16 6 H 0.06 1.59 6.67 -52.49 -0.35 1.24 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.23 11.30 55.43 0.63 -23.61 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.52 -10.02 3.07 -232.73 -0.71 -10.74 16 14 C 0.04 0.57 5.26 -4.24 -0.02 0.55 16 15 C 0.14 2.00 6.49 -2.60 -0.02 1.99 16 16 N -0.57 -8.58 2.53 -177.77 -0.45 -9.03 16 17 C 0.65 10.56 7.64 54.06 0.41 10.98 16 18 O -0.57 -10.12 11.16 -19.28 -0.22 -10.34 16 19 O -0.36 -5.34 8.53 -40.32 -0.34 -5.69 16 20 C 0.14 1.68 1.13 -90.62 -0.10 1.57 16 21 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 22 C -0.18 -2.38 8.37 37.15 0.31 -2.06 16 23 C -0.14 -1.32 8.85 37.16 0.33 -1.00 16 24 C 0.10 1.38 5.20 -3.99 -0.02 1.36 16 25 C 0.08 1.37 4.01 -28.34 -0.11 1.26 16 26 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 27 F -0.21 -3.55 17.05 2.25 0.04 -3.51 16 28 C 0.03 0.47 4.30 -6.81 -0.03 0.44 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 1.07 7.37 -51.93 -0.38 0.68 16 31 H 0.05 1.24 7.48 -51.93 -0.39 0.85 16 32 H 0.09 2.40 6.01 -51.93 -0.31 2.09 16 33 H 0.01 0.30 6.21 -51.93 -0.32 -0.03 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 35 H 0.09 1.47 5.59 -51.93 -0.29 1.18 16 36 H 0.03 0.52 7.14 -51.93 -0.37 0.14 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.58 6.96 -51.93 -0.36 1.22 16 39 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.42 5.88 -51.93 -0.31 1.12 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 1.15 7.18 -51.93 -0.37 0.77 16 49 H 0.08 1.02 8.09 -51.93 -0.42 0.59 16 50 H 0.10 2.22 5.60 -51.93 -0.29 1.93 16 51 H 0.03 0.52 7.18 -51.93 -0.37 0.15 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -27.73 383.35 -8.09 -35.82 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.63 Total: 3.53 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 0.84 Total: 1.96 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.54 Total: -43.38 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.56 Total: -16.03 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.04 Total: -3.51 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -27.73 -8.09 -35.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.229 kcal (2) G-P(sol) polarization free energy of solvation -27.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds