Wall clock time and date at job start Sat Apr 11 2020 02:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47146 * 2 1 4 4 H 1.09000 * 109.47484 * 177.68391 * 3 2 1 5 5 C 1.50709 * 109.46870 * 297.68341 * 3 2 1 6 6 H 1.07994 * 120.00041 * 119.99918 * 5 3 2 7 7 C 1.37874 * 119.99786 * 300.00198 * 5 3 2 8 8 N 1.31516 * 120.00238 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99829 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47125 * 59.99841 * 9 7 5 11 11 H 1.48504 * 109.46795 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46941 * 299.99623 * 9 7 5 13 13 N 1.46901 * 109.47364 * 57.67961 * 3 2 1 14 14 C 1.44758 * 110.99496 * 62.52790 * 13 3 2 15 15 C 1.54408 * 109.83052 * 217.75688 * 14 13 3 16 16 N 1.47776 * 111.34297 * 320.29220 * 15 14 13 17 17 C 1.34778 * 118.54711 * 137.98879 * 16 15 14 18 18 O 1.21510 * 119.99921 * 359.73250 * 17 16 15 19 19 O 1.34640 * 120.00070 * 179.73306 * 17 16 15 20 20 C 1.45204 * 117.00264 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.46922 * 59.99993 * 20 19 17 22 22 C 1.52995 * 109.46796 * 300.00047 * 20 19 17 23 23 C 1.52995 * 109.47166 * 180.02562 * 20 19 17 24 24 C 1.44677 * 122.90865 * 317.70911 * 16 15 14 25 25 C 1.54947 * 109.51857 * 89.35669 * 24 16 15 26 26 H 1.08998 * 109.42385 * 50.60846 * 25 24 16 27 27 F 1.39901 * 109.42329 * 170.44080 * 25 24 16 28 28 C 1.46260 * 111.00153 * 186.02217 * 13 3 2 29 29 H 1.09001 * 109.46910 * 185.32534 * 1 2 3 30 30 H 1.09002 * 109.47244 * 305.32309 * 1 2 3 31 31 H 1.09001 * 109.47400 * 65.32327 * 1 2 3 32 32 H 1.09000 * 109.47434 * 239.99666 * 2 1 3 33 33 H 1.09003 * 109.46937 * 119.99326 * 2 1 3 34 34 H 0.96996 * 120.00443 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.44066 * 337.92301 * 14 13 3 36 36 H 1.09005 * 109.43760 * 97.84224 * 14 13 3 37 37 H 1.08999 * 109.27059 * 199.75085 * 15 14 13 38 38 H 1.09005 * 109.07150 * 80.69170 * 15 14 13 39 39 H 1.09006 * 109.46969 * 300.00169 * 21 20 19 40 40 H 1.08992 * 109.47122 * 60.00048 * 21 20 19 41 41 H 1.08995 * 109.46734 * 180.02562 * 21 20 19 42 42 H 1.09007 * 109.47038 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.47515 * 299.99908 * 22 20 19 44 44 H 1.09004 * 109.47691 * 60.00034 * 22 20 19 45 45 H 1.08999 * 109.47459 * 299.99947 * 23 20 19 46 46 H 1.08999 * 109.47492 * 60.00065 * 23 20 19 47 47 H 1.08998 * 109.46830 * 180.02562 * 23 20 19 48 48 H 1.08993 * 109.46721 * 209.37820 * 24 16 15 49 49 H 1.09003 * 109.45743 * 329.34679 * 24 16 15 50 50 H 1.09006 * 108.50572 * 27.29016 * 28 13 3 51 51 H 1.09002 * 108.50623 * 269.82973 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0415 5 6 1.5851 2.1361 -1.2583 6 1 0.9611 3.0152 -1.1948 7 6 1.9655 1.6482 -2.4904 8 7 2.7249 0.5773 -2.5677 9 14 1.4022 2.5084 -4.0500 10 1 1.8977 3.9082 -4.0498 11 1 1.9422 1.7916 -5.2332 12 1 -0.0818 2.5085 -4.1068 13 7 1.5051 2.1510 1.1704 14 6 1.9709 1.5463 2.4004 15 6 0.8423 1.5659 3.4539 16 7 0.0844 2.8336 3.4067 17 6 -1.2583 2.7857 3.5136 18 8 -1.8198 1.7157 3.6406 19 8 -1.9774 3.9235 3.4796 20 6 -3.4188 3.7962 3.5998 21 6 -3.7626 3.1323 4.9347 22 6 -3.9524 2.9382 2.4510 23 6 -4.0601 5.1840 3.5396 24 6 0.7203 4.1245 3.2566 25 6 0.8574 4.4621 1.7506 26 1 -0.1062 4.3263 1.2595 27 9 1.2681 5.7918 1.6074 28 6 1.8551 3.5705 1.1289 29 1 -0.3633 -1.0232 0.0954 30 1 -0.3634 0.5942 0.8385 31 1 -0.3634 0.4290 -0.9338 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.9929 0.2342 -3.4345 35 1 2.2695 0.5158 2.2076 36 1 2.8257 2.1068 2.7792 37 1 1.2752 1.4467 4.4471 38 1 0.1613 0.7367 3.2618 39 1 -3.3057 2.1435 4.9770 40 1 -3.3824 3.7435 5.7530 41 1 -4.8446 3.0363 5.0246 42 1 -5.0345 2.8422 2.5414 43 1 -3.7075 3.4111 1.5000 44 1 -3.4956 1.9494 2.4933 45 1 -3.6800 5.7957 4.3578 46 1 -3.8152 5.6566 2.5885 47 1 -5.1421 5.0884 3.6303 48 1 0.1145 4.8869 3.7461 49 1 1.7093 4.0974 3.7142 50 1 1.9810 3.8655 0.0871 51 1 2.8077 3.7072 1.6408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:15 Heat of formation + Delta-G solvation = -128.349215 kcal Electronic energy + Delta-G solvation = -31991.538652 eV Core-core repulsion = 27840.465111 eV Total energy + Delta-G solvation = -4151.073541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.70836 -41.89757 -40.10624 -38.25970 -36.84535 -35.14831 -34.50996 -33.50115 -32.40251 -29.67400 -28.30364 -28.24722 -27.58489 -27.35463 -24.95336 -24.27691 -22.36089 -22.03675 -20.68633 -20.15352 -18.91868 -18.38270 -17.97716 -17.54106 -17.18087 -17.13016 -16.58449 -16.27911 -15.97600 -15.55284 -15.33602 -15.26018 -14.93324 -14.80193 -14.58596 -14.22504 -13.95424 -13.78494 -13.64941 -13.50099 -13.27835 -13.10040 -12.99745 -12.85464 -12.80185 -12.79520 -12.66116 -12.48562 -12.37018 -12.32975 -12.16505 -11.97132 -11.79955 -11.61082 -11.42041 -11.30608 -11.23977 -10.96028 -10.80392 -10.47168 -9.70288 -8.95967 -8.10418 -6.18918 1.19172 1.39631 1.41143 1.47463 1.85399 2.40539 2.75012 3.14106 3.20589 3.54055 3.73464 3.81840 3.86510 3.99725 4.00974 4.06407 4.16868 4.28758 4.43097 4.50051 4.58224 4.61327 4.66628 4.69528 4.72574 4.74192 4.75968 4.81647 4.88293 4.92204 4.93359 4.94294 5.06020 5.13864 5.16593 5.30705 5.34800 5.36818 5.41166 5.48273 5.52208 5.58393 5.70963 5.75394 5.89565 6.29674 6.33693 6.36736 6.75760 6.91950 7.36377 7.47962 8.94359 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004286 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.834890 B = 6531.657521 C = 6600.241870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C 0.229 3.771 4 H -0.030 1.030 5 C -0.507 4.507 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.521 5.521 14 C 0.034 3.966 15 C 0.143 3.857 16 N -0.570 5.570 17 C 0.647 3.353 18 O -0.588 6.588 19 O -0.368 6.368 20 C 0.125 3.875 21 C -0.175 4.175 22 C -0.180 4.180 23 C -0.135 4.135 24 C 0.108 3.892 25 C 0.092 3.908 26 H 0.067 0.933 27 F -0.212 7.212 28 C 0.030 3.970 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.260 0.740 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.107 0.893 50 H 0.069 0.931 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 6.956 15.781 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C 0.123 3.877 4 H -0.013 1.013 5 C -0.545 4.545 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.769 3.231 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.245 5.245 14 C -0.095 4.095 15 C 0.022 3.978 16 N -0.308 5.308 17 C 0.403 3.597 18 O -0.479 6.479 19 O -0.283 6.283 20 C 0.089 3.911 21 C -0.232 4.232 22 C -0.237 4.237 23 C -0.191 4.191 24 C -0.017 4.017 25 C 0.053 3.947 26 H 0.085 0.915 27 F -0.194 7.194 28 C -0.099 4.099 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.125 0.875 50 H 0.087 0.913 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.158 6.526 15.665 19.283 hybrid contribution 0.866 0.245 -1.566 1.806 sum -8.293 6.771 14.099 17.703 Atomic orbital electron populations 1.21261 0.96375 0.98232 1.00230 1.21448 0.95673 0.97335 0.99677 1.19059 0.90534 0.91427 0.86689 1.01267 1.21189 1.30711 1.11596 0.91001 0.93147 1.25473 0.95345 0.95604 1.01339 1.69962 1.36900 1.23298 1.25101 0.85846 0.78499 0.78842 0.79864 1.19952 1.20988 1.20328 1.60637 1.60716 1.00693 1.02467 1.22589 0.95514 1.01192 0.90210 1.22145 0.93289 0.83622 0.98765 1.46370 1.02372 1.08263 1.73789 1.18227 0.83156 0.82405 0.75954 1.90856 1.70305 1.30356 1.56416 1.86317 1.22731 1.33223 1.86015 1.22374 0.74017 0.98431 0.96323 1.22432 1.03662 1.01810 0.95286 1.22458 1.02911 1.00903 0.97409 1.21867 1.01394 0.92466 1.03421 1.22014 1.01099 0.84898 0.93658 1.21087 0.98487 0.76427 0.98659 0.91515 1.92774 1.92540 1.36993 1.97048 1.21375 0.96075 0.90123 1.02291 0.94856 0.93326 0.95589 0.91742 0.94559 0.93031 0.89771 0.92824 0.88560 0.90399 0.91953 0.91547 0.89178 0.89008 0.93196 0.92208 0.90736 0.91996 0.87922 0.87791 0.87528 0.91306 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.56 9.50 71.98 0.68 -3.88 16 2 C -0.10 -4.73 5.25 30.59 0.16 -4.57 16 3 C 0.23 10.85 1.68 44.17 0.07 10.92 16 4 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 5 C -0.51 -26.64 6.39 25.60 0.16 -26.47 16 6 H 0.05 2.71 6.67 -2.91 -0.02 2.69 16 7 C 0.02 1.17 5.30 84.65 0.45 1.61 16 8 N -0.91 -50.95 11.30 21.45 0.24 -50.71 16 9 Si 0.94 43.52 29.54 68.60 2.03 45.55 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.52 -20.15 3.07 -890.21 -2.73 -22.88 16 14 C 0.03 1.06 5.26 87.18 0.46 1.52 16 15 C 0.14 3.90 6.49 86.61 0.56 4.46 16 16 N -0.57 -16.18 2.53 -946.75 -2.39 -18.57 16 17 C 0.65 20.31 7.64 129.79 0.99 21.30 16 18 O -0.59 -20.82 11.16 19.81 0.22 -20.60 16 19 O -0.37 -10.34 8.53 -55.50 -0.47 -10.81 16 20 C 0.12 2.86 1.13 -10.80 -0.01 2.85 16 21 C -0.17 -3.60 8.37 71.98 0.60 -3.00 16 22 C -0.18 -4.54 8.37 71.98 0.60 -3.94 16 23 C -0.13 -2.19 8.85 71.98 0.64 -1.55 16 24 C 0.11 2.73 5.20 87.39 0.45 3.18 16 25 C 0.09 2.94 4.01 29.55 0.12 3.05 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 F -0.21 -6.84 17.05 44.97 0.77 -6.08 16 28 C 0.03 1.12 4.30 84.72 0.36 1.48 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 2.12 7.37 -2.39 -0.02 2.10 16 31 H 0.02 1.24 7.48 -2.39 -0.02 1.22 16 32 H 0.06 3.38 6.01 -2.39 -0.01 3.36 16 33 H 0.04 1.48 6.21 -2.39 -0.01 1.47 16 34 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 35 H 0.08 2.69 5.59 -2.39 -0.01 2.67 16 36 H 0.05 1.47 7.14 -2.38 -0.02 1.45 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 2.46 6.96 -2.38 -0.02 2.44 16 39 H 0.06 1.65 5.88 -2.38 -0.01 1.63 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.77 8.14 -2.38 -0.02 1.76 16 43 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.90 5.88 -2.39 -0.01 1.88 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.10 2.38 7.18 -2.39 -0.02 2.36 16 49 H 0.11 2.22 8.09 -2.39 -0.02 2.21 16 50 H 0.07 3.02 5.60 -2.38 -0.01 3.00 16 51 H 0.04 1.43 7.18 -2.39 -0.02 1.42 16 Total: -1.00 -61.78 383.35 4.88 -56.90 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.91 Total: 20.22 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.31 Total: 6.98 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -4.88 Total: -92.16 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.25 Total: -31.41 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.77 Total: -6.08 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -61.78 4.88 -56.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.451 kcal (2) G-P(sol) polarization free energy of solvation -61.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds