Wall clock time and date at job start Sat Apr 11 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47004 * 2 1 4 4 H 1.08992 * 110.64355 * 51.85530 * 3 2 1 5 5 C 1.55165 * 110.71862 * 288.52084 * 3 2 1 6 6 C 1.55120 * 101.48432 * 205.97310 * 5 3 2 7 7 N 1.47422 * 104.72810 * 37.29307 * 6 5 3 8 8 C 1.34779 * 125.64928 * 155.81741 * 7 6 5 9 9 O 1.21586 * 119.99750 * 179.69649 * 8 7 6 10 10 N 1.34777 * 120.00124 * 359.69098 * 8 7 6 11 11 C 1.46496 * 119.99702 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47379 * 35.00185 * 11 10 8 13 13 C 1.53002 * 109.46832 * 155.00537 * 11 10 8 14 14 C 1.50699 * 109.47118 * 294.99948 * 13 11 10 15 15 H 1.07999 * 119.99741 * 359.97438 * 14 13 11 16 16 C 1.37879 * 120.00221 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99857 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99874 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47676 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47475 * 120.00015 * 18 16 14 21 21 H 1.48504 * 109.47263 * 239.99502 * 18 16 14 22 22 C 1.50702 * 109.47344 * 275.00036 * 11 10 8 23 23 C 1.38234 * 119.99895 * 319.73221 * 22 11 10 24 24 C 1.38240 * 120.00062 * 180.32314 * 23 22 11 25 25 C 1.38234 * 119.99686 * 359.92348 * 24 23 22 26 26 C 1.38234 * 120.00244 * 0.07174 * 25 24 23 27 27 C 1.38230 * 119.99864 * 359.95693 * 26 25 24 28 28 C 1.47027 * 108.70275 * 335.55526 * 7 6 5 29 29 H 1.09000 * 109.88066 * 241.86757 * 28 7 6 30 30 C 1.52994 * 109.88154 * 120.85614 * 28 7 6 31 31 H 1.09005 * 109.46897 * 299.99992 * 1 2 3 32 32 H 1.08998 * 109.47085 * 60.00126 * 1 2 3 33 33 H 1.08999 * 109.46851 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47468 * 240.00058 * 2 1 3 35 35 H 1.09005 * 109.47466 * 119.99807 * 2 1 3 36 36 H 1.09005 * 110.99788 * 324.20860 * 5 3 2 37 37 H 1.08991 * 111.00242 * 88.02262 * 5 3 2 38 38 H 1.09007 * 110.49826 * 278.45276 * 6 5 3 39 39 H 1.09001 * 110.34613 * 156.06375 * 6 5 3 40 40 H 0.96997 * 119.99831 * 0.02562 * 10 8 7 41 41 H 1.09003 * 109.47084 * 54.99915 * 13 11 10 42 42 H 1.09003 * 109.47373 * 174.99562 * 13 11 10 43 43 H 0.96996 * 119.99544 * 180.02562 * 17 16 14 44 44 H 1.08001 * 120.00279 * 0.27436 * 23 22 11 45 45 H 1.07997 * 119.99831 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.99747 * 180.02562 * 25 24 23 47 47 H 1.08002 * 119.99744 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.00356 * 179.97438 * 27 26 25 49 49 H 1.09001 * 109.47509 * 61.45475 * 30 28 7 50 50 H 1.09002 * 109.46873 * 181.45751 * 30 28 7 51 51 H 1.09008 * 109.47323 * 301.45244 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 2.0148 0.8021 5 6 1.7883 2.1137 -1.3761 6 6 2.9042 3.1909 -1.4031 7 7 4.0636 2.5456 -0.7607 8 6 5.3548 2.8822 -0.9502 9 8 6.2324 2.2818 -0.3606 10 7 5.6732 3.8844 -1.7933 11 6 7.0768 4.2499 -1.9996 12 1 7.6958 3.3538 -1.9560 13 6 7.2350 4.9129 -3.3694 14 6 6.9204 3.9120 -4.4513 15 1 6.6365 2.9038 -4.1881 16 6 6.9961 4.2832 -5.7770 17 7 7.3424 5.5108 -6.0974 18 14 6.6069 3.0423 -7.1179 19 1 6.2472 1.7412 -6.4992 20 1 5.4675 3.5352 -7.9330 21 1 7.7971 2.8640 -7.9880 22 6 7.5089 5.2119 -0.9231 23 6 6.6513 6.2124 -0.5054 24 6 7.0502 7.0990 0.4773 25 6 8.3060 6.9840 1.0435 26 6 9.1636 5.9835 0.6259 27 6 8.7649 5.0973 -0.3572 28 6 3.5777 1.4780 0.1258 29 1 3.8605 1.6943 1.1560 30 6 4.1694 0.1344 -0.3049 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.9122 1.3976 -2.1885 37 1 0.8012 2.5745 -1.4113 38 1 2.5987 4.0713 -0.8376 39 1 3.1431 3.4634 -2.4311 40 1 4.9731 4.3635 -2.2634 41 1 6.5502 5.7575 -3.4456 42 1 8.2600 5.2646 -3.4867 43 1 7.3952 5.7720 -7.0301 44 1 5.6700 6.3019 -0.9475 45 1 6.3804 7.8809 0.8033 46 1 8.6175 7.6764 1.8116 47 1 10.1449 5.8940 1.0680 48 1 9.4350 4.3158 -0.6839 49 1 5.2557 0.1731 -0.2239 50 1 3.7848 -0.6555 0.3402 51 1 3.8892 -0.0716 -1.3380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312339721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:48 Heat of formation + Delta-G solvation = -19.668519 kcal Electronic energy + Delta-G solvation = -29218.410294 eV Core-core repulsion = 25502.818726 eV Total energy + Delta-G solvation = -3715.591568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.29130 -39.02018 -37.77157 -35.09799 -34.09125 -32.69727 -31.40675 -30.88265 -30.41885 -29.55268 -28.55457 -25.73450 -24.93827 -23.28340 -22.82728 -22.22260 -21.89400 -20.32371 -19.48325 -18.91489 -17.79983 -16.73882 -16.14075 -15.96988 -15.50827 -15.01337 -14.73157 -14.61520 -14.60466 -14.40215 -13.93679 -13.55363 -13.29606 -13.08037 -12.97200 -12.73134 -12.67633 -12.44497 -12.24724 -12.13986 -12.08060 -11.85287 -11.50703 -11.46050 -11.29316 -11.10233 -10.88854 -10.73330 -10.70728 -10.65877 -10.56523 -10.42564 -10.34529 -9.74177 -9.51583 -9.24857 -8.55045 -8.47475 -8.43590 -8.16177 -8.07371 -6.07543 -4.10278 1.83726 1.86037 3.03858 3.26235 3.34989 3.39742 3.75790 4.23029 4.33464 4.41124 4.50536 4.62138 4.67964 5.02810 5.16487 5.19859 5.20574 5.29218 5.31050 5.32585 5.37989 5.42822 5.49439 5.56169 5.60321 5.65126 5.69245 5.79922 5.82192 5.83153 5.94612 5.96649 5.99865 6.02785 6.12971 6.21021 6.26690 6.39531 6.43770 6.49403 6.63700 6.68809 6.89881 6.90849 7.03783 7.18464 7.45838 7.46935 7.57384 7.71938 7.90134 8.28692 8.55767 8.96063 9.18886 9.54475 11.03112 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007668 B = 0.004676 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3650.675960 B = 5985.966367 C = 8689.731103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.082 0.918 5 C -0.124 4.124 6 C 0.097 3.903 7 N -0.637 5.637 8 C 0.723 3.277 9 O -0.594 6.594 10 N -0.715 5.715 11 C 0.202 3.798 12 H 0.086 0.914 13 C 0.024 3.976 14 C -0.516 4.516 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.070 4.070 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.108 4.108 28 C 0.160 3.840 29 H 0.067 0.933 30 C -0.164 4.164 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.395 0.605 41 H 0.023 0.977 42 H 0.035 0.965 43 H 0.261 0.739 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.072 0.928 50 H 0.060 0.940 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 -3.858 13.212 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.116 4.116 4 H 0.100 0.900 5 C -0.162 4.162 6 C -0.026 4.026 7 N -0.376 5.376 8 C 0.425 3.575 9 O -0.473 6.473 10 N -0.367 5.367 11 C 0.097 3.903 12 H 0.104 0.896 13 C -0.014 4.014 14 C -0.555 4.555 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.071 4.071 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.126 4.126 28 C 0.056 3.944 29 H 0.085 0.915 30 C -0.222 4.222 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.230 0.770 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.138 0.862 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.532 -4.155 13.456 17.586 hybrid contribution -0.542 -0.215 -1.127 1.269 sum -11.073 -4.369 12.329 17.138 Atomic orbital electron populations 1.21793 0.95876 1.01490 1.01810 1.21608 0.95528 0.95447 1.02552 1.22314 0.94221 0.96989 0.98040 0.89995 1.22859 0.98207 0.97921 0.97254 1.22293 0.86169 0.95747 0.98400 1.47624 1.04015 1.37433 1.48567 1.15497 0.80911 0.80807 0.80309 1.90852 1.46386 1.56685 1.53339 1.45156 1.09343 1.36100 1.46133 1.20109 0.80174 0.95986 0.94012 0.89633 1.19399 0.98484 0.95924 0.87558 1.21177 1.46326 0.97410 0.90543 0.92361 1.24981 0.95255 0.95162 0.98753 1.69973 1.48024 1.17315 1.17832 0.86562 0.77990 0.81646 0.81975 1.19781 1.21072 1.20986 1.20610 0.93977 0.96118 0.96388 1.20878 0.99540 0.94836 0.97173 1.21026 0.96463 0.99286 0.97636 1.20976 0.94656 0.98991 1.00790 1.21031 0.99320 0.95837 0.97960 1.21016 0.96199 0.99105 0.96306 1.21261 0.92223 0.87416 0.93482 0.91500 1.22227 1.02983 0.95868 1.01095 0.92876 0.92594 0.92868 0.91245 0.91625 0.90434 0.90193 0.91858 0.90457 0.77035 0.95829 0.94694 0.92975 0.86767 0.86860 0.86921 0.86664 0.86204 0.90921 0.92080 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.80 37.16 0.36 -0.68 16 2 C -0.11 -0.92 4.13 -26.73 -0.11 -1.03 16 3 C -0.10 -0.91 2.85 -88.78 -0.25 -1.16 16 4 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 5 C -0.12 -1.18 5.95 -24.46 -0.15 -1.32 16 6 C 0.10 1.16 6.59 -2.42 -0.02 1.14 16 7 N -0.64 -9.68 3.08 -168.55 -0.52 -10.20 16 8 C 0.72 13.90 8.23 -86.92 -0.72 13.18 16 9 O -0.59 -13.36 14.89 5.29 0.08 -13.28 16 10 N -0.71 -13.66 4.00 -59.81 -0.24 -13.90 16 11 C 0.20 4.27 2.11 -69.08 -0.15 4.12 16 12 H 0.09 1.99 7.44 -51.93 -0.39 1.60 16 13 C 0.02 0.58 4.49 -27.88 -0.13 0.45 16 14 C -0.52 -13.81 8.84 -34.44 -0.30 -14.11 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 C -0.07 -1.34 4.91 -104.62 -0.51 -1.86 16 23 C -0.11 -1.86 9.33 -39.58 -0.37 -2.23 16 24 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 25 C -0.14 -2.02 10.05 -39.58 -0.40 -2.41 16 26 C -0.12 -1.94 10.05 -39.59 -0.40 -2.33 16 27 C -0.11 -1.95 9.67 -39.59 -0.38 -2.33 16 28 C 0.16 2.08 3.43 -66.95 -0.23 1.85 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 C -0.16 -2.18 8.00 37.15 0.30 -1.88 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.38 7.69 -51.93 -0.40 -0.02 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.61 6.83 -51.93 -0.35 0.25 16 35 H 0.07 0.51 7.31 -51.93 -0.38 0.13 16 36 H 0.08 0.78 7.94 -51.93 -0.41 0.37 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.08 0.97 7.29 -51.93 -0.38 0.59 16 40 H 0.40 7.03 7.08 -40.82 -0.29 6.74 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.11 1.90 7.72 -52.49 -0.41 1.49 16 45 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 46 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 48 H 0.12 2.08 8.04 -52.49 -0.42 1.66 16 49 H 0.07 1.21 6.73 -51.93 -0.35 0.86 16 50 H 0.06 0.65 6.58 -51.93 -0.34 0.31 16 51 H 0.05 0.74 7.60 -51.92 -0.39 0.35 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -31.62 403.62 -11.53 -43.15 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -8.70 Total: 8.36 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.94 Total: -11.41 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.02 Total: -49.04 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.62 -11.53 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312339721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.477 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds