Wall clock time and date at job start Sat Apr 11 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47445 * 2 1 4 4 N 1.46896 * 109.47463 * 120.00382 * 2 1 3 5 5 C 1.46849 * 111.00382 * 179.97438 * 4 2 1 6 6 C 1.53031 * 109.52547 * 185.83592 * 5 4 2 7 7 C 1.53112 * 109.28043 * 300.82046 * 6 5 4 8 8 N 1.46501 * 109.52181 * 177.55799 * 7 6 5 9 9 C 1.34783 * 120.00051 * 155.12782 * 8 7 6 10 10 O 1.21282 * 119.99858 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00304 * 179.97438 * 9 8 7 12 12 H 1.09003 * 109.47197 * 310.21351 * 11 9 8 13 13 C 1.50699 * 109.46904 * 70.20771 * 11 9 8 14 14 H 1.08001 * 120.00018 * 54.88218 * 13 11 9 15 15 C 1.37876 * 119.99907 * 234.60761 * 13 11 9 16 16 N 1.31516 * 119.99806 * 176.90575 * 15 13 11 17 17 Si 1.86796 * 120.00265 * 356.90577 * 15 13 11 18 18 H 1.48493 * 109.47284 * 84.47010 * 17 15 13 19 19 H 1.48504 * 109.47278 * 204.47095 * 17 15 13 20 20 H 1.48503 * 109.46787 * 324.46981 * 17 15 13 21 21 C 1.50700 * 109.47337 * 190.20811 * 11 9 8 22 22 C 1.38237 * 119.99910 * 291.60348 * 21 11 9 23 23 C 1.38229 * 119.99632 * 179.80836 * 22 21 11 24 24 C 1.38232 * 120.00449 * 0.39777 * 23 22 21 25 25 C 1.38241 * 119.99673 * 359.85603 * 24 23 22 26 26 C 1.38231 * 120.00111 * 359.95081 * 25 24 23 27 27 C 1.53122 * 109.21174 * 57.62290 * 7 6 5 28 28 C 1.46850 * 110.99738 * 304.20777 * 4 2 1 29 29 H 1.09009 * 109.46663 * 299.99718 * 1 2 3 30 30 H 1.08998 * 109.47140 * 59.99788 * 1 2 3 31 31 H 1.08999 * 109.47333 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47051 * 240.00077 * 2 1 3 33 33 H 1.09003 * 109.46933 * 60.00005 * 3 2 1 34 34 H 1.08997 * 109.47870 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47143 * 300.00777 * 3 2 1 36 36 H 1.09001 * 109.46047 * 65.81783 * 5 4 2 37 37 H 1.09001 * 109.45684 * 305.85775 * 5 4 2 38 38 H 1.09005 * 109.50601 * 180.87406 * 6 5 4 39 39 H 1.09008 * 109.50167 * 60.76165 * 6 5 4 40 40 H 1.09001 * 109.52327 * 297.68456 * 7 6 5 41 41 H 0.96998 * 120.00525 * 335.12769 * 8 7 6 42 42 H 0.97005 * 120.00379 * 179.97438 * 16 15 13 43 43 H 1.08000 * 119.99999 * 359.97438 * 22 21 11 44 44 H 1.08001 * 120.00107 * 180.22929 * 23 22 21 45 45 H 1.08000 * 120.00401 * 179.83340 * 24 23 22 46 46 H 1.08001 * 119.99608 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.00212 * 179.97438 * 26 25 24 48 48 H 1.08998 * 109.50406 * 62.31758 * 27 7 6 49 49 H 1.09004 * 109.50409 * 182.43374 * 27 7 6 50 50 H 1.09004 * 109.46290 * 294.17489 * 28 4 2 51 51 H 1.09003 * 109.46216 * 54.15785 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.4877 -0.7127 1.2330 6 6 3.9606 -1.5637 2.4136 7 6 3.4098 -0.9739 3.7147 8 7 3.8110 -1.8177 4.8432 9 6 3.8980 -1.2912 6.0808 10 8 3.6437 -0.1190 6.2604 11 6 4.3101 -2.1592 7.2417 12 1 3.7128 -3.0710 7.2437 13 6 5.7687 -2.5147 7.1102 14 1 6.5076 -1.7338 7.0069 15 6 6.1603 -3.8365 7.1274 16 7 7.4255 -4.1498 6.9517 17 14 4.8941 -5.1824 7.4004 18 1 4.2505 -5.5263 6.1071 19 1 5.5631 -6.3863 7.9559 20 1 3.8620 -4.7047 8.3553 21 6 4.0897 -1.4114 8.5314 22 6 4.8712 -0.3124 8.8353 23 6 4.6663 0.3759 10.0164 24 6 3.6855 -0.0395 10.8974 25 6 2.9074 -1.1417 10.5958 26 6 3.1096 -1.8276 9.4129 27 6 1.8817 -0.9181 3.6354 28 6 1.4685 -0.0872 2.4184 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 3.8623 0.3047 1.3455 37 1 3.8664 -1.1382 0.3036 38 1 5.0501 -1.5658 2.4475 39 1 3.5978 -2.5848 2.2946 40 1 3.8044 0.0326 3.8541 41 1 4.0140 -2.7553 4.6997 42 1 7.7012 -5.0798 6.9641 43 1 5.6401 0.0100 8.1488 44 1 5.2744 1.2368 10.2522 45 1 3.5272 0.4967 11.8214 46 1 2.1414 -1.4665 11.2843 47 1 2.5021 -2.6890 9.1775 48 1 1.4853 -1.9286 3.5362 49 1 1.4867 -0.4590 4.5418 50 1 1.8523 0.9273 2.5257 51 1 0.3810 -0.0589 2.3501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412373482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:48 Heat of formation + Delta-G solvation = -20.646248 kcal Electronic energy + Delta-G solvation = -29031.592749 eV Core-core repulsion = 25315.958784 eV Total energy + Delta-G solvation = -3715.633966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.90728 -39.03496 -37.83923 -35.52013 -33.62316 -32.58451 -31.52188 -30.93141 -30.12069 -29.43372 -27.62790 -27.43919 -24.29243 -23.38678 -23.03071 -21.83475 -21.12786 -20.47104 -19.49455 -18.97793 -17.15118 -16.60579 -16.14323 -16.07389 -15.48376 -15.09007 -14.71388 -14.59773 -14.34699 -14.17373 -13.89122 -13.72372 -13.57882 -13.13482 -13.01866 -12.79280 -12.62614 -12.61331 -12.34448 -12.15486 -12.01565 -11.85705 -11.75761 -11.50106 -11.33291 -11.12757 -11.09738 -11.04155 -10.85065 -10.50776 -10.45028 -10.33743 -10.12932 -9.98596 -9.48156 -9.00364 -8.69014 -8.37678 -8.31664 -8.12121 -7.80134 -6.31397 -4.34402 2.16539 2.22918 3.09950 3.22095 3.23213 3.65147 3.77212 3.95178 4.18838 4.63664 4.65456 4.81962 4.85236 4.98878 5.03305 5.10223 5.20471 5.29062 5.32500 5.39941 5.51225 5.55914 5.58570 5.60381 5.61933 5.65447 5.70601 5.75099 5.80021 5.81996 5.96490 5.98223 6.03227 6.08869 6.11479 6.20239 6.22600 6.33070 6.36528 6.42087 6.53144 6.75465 6.87144 7.03876 7.05395 7.18049 7.20028 7.26627 7.29821 7.61002 7.80945 8.20343 8.35933 8.71136 9.18052 9.26046 10.80056 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003497 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.007029 B = 8004.061810 C = 9252.768648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.189 4.189 4 N -0.532 5.532 5 C 0.059 3.941 6 C -0.125 4.125 7 C 0.148 3.852 8 N -0.726 5.726 9 C 0.532 3.468 10 O -0.563 6.563 11 C 0.028 3.972 12 H 0.063 0.937 13 C -0.506 4.506 14 H 0.083 0.917 15 C 0.082 3.918 16 N -0.882 5.882 17 Si 0.866 3.134 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.261 1.261 21 C -0.025 4.025 22 C -0.072 4.072 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.134 4.134 27 C -0.126 4.126 28 C 0.054 3.946 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.401 0.599 42 H 0.269 0.731 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.036 0.964 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 5.509 -9.879 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 C -0.248 4.248 4 N -0.257 5.257 5 C -0.069 4.069 6 C -0.163 4.163 7 C 0.043 3.957 8 N -0.377 5.377 9 C 0.321 3.679 10 O -0.441 6.441 11 C 0.006 3.994 12 H 0.081 0.919 13 C -0.544 4.544 14 H 0.101 0.899 15 C -0.122 4.122 16 N -0.518 5.518 17 Si 0.693 3.307 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.026 4.026 22 C -0.090 4.090 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.152 4.152 27 C -0.165 4.165 28 C -0.074 4.074 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.235 0.765 42 H 0.079 0.921 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.054 0.946 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.480 5.692 -9.775 16.116 hybrid contribution -0.025 -0.471 0.148 0.495 sum -11.504 5.221 -9.626 15.883 Atomic orbital electron populations 1.21917 0.94473 1.02456 1.01658 1.21683 0.95636 0.92324 0.93593 1.22504 1.01730 0.98260 1.02296 1.62217 1.08067 1.53500 1.01888 1.22031 0.87330 0.98768 0.98757 1.21870 1.01013 1.00289 0.93117 1.20805 0.93612 0.95754 0.85574 1.45945 1.70808 1.13740 1.07193 1.21444 0.73522 0.88554 0.84362 1.90571 1.50661 1.17776 1.85131 1.18417 0.99542 0.94082 0.87339 0.91876 1.20561 0.88297 0.93780 1.51717 0.89923 1.25049 0.95269 0.98212 0.93701 1.69855 1.15427 1.18925 1.47568 0.86999 0.82212 0.81940 0.79577 1.19563 1.20916 1.18548 1.19943 0.92589 0.93947 0.96110 1.20877 0.98168 0.94357 0.95624 1.21034 0.98658 1.00037 0.95123 1.20865 0.97771 0.98055 0.99422 1.20882 1.00081 0.96698 0.97159 1.20994 0.98727 1.00251 0.95220 1.22002 0.96461 1.00963 0.97111 1.22134 0.99914 0.96089 0.89287 0.92365 0.92416 0.91804 0.90070 0.92317 0.92308 0.92252 0.94385 0.90623 0.90528 0.90647 0.90318 0.76534 0.92081 0.86423 0.87156 0.87364 0.87286 0.87286 0.91187 0.91025 0.94595 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.84 37.16 0.33 -0.87 16 2 C 0.08 0.69 3.02 -67.72 -0.20 0.49 16 3 C -0.19 -1.64 8.51 37.16 0.32 -1.32 16 4 N -0.53 -5.86 4.68 -226.69 -1.06 -6.92 16 5 C 0.06 0.66 4.89 -3.84 -0.02 0.65 16 6 C -0.12 -1.62 5.57 -26.66 -0.15 -1.77 16 7 C 0.15 2.31 2.52 -67.81 -0.17 2.13 16 8 N -0.73 -13.35 5.08 -53.69 -0.27 -13.62 16 9 C 0.53 11.57 6.96 -10.98 -0.08 11.50 16 10 O -0.56 -13.33 15.02 5.56 0.08 -13.25 16 11 C 0.03 0.63 2.22 -94.08 -0.21 0.43 16 12 H 0.06 1.39 4.52 -51.93 -0.23 1.16 16 13 C -0.51 -13.08 8.23 -34.44 -0.28 -13.37 16 14 H 0.08 2.38 7.66 -52.49 -0.40 1.98 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 16 N -0.88 -24.78 13.96 55.43 0.77 -24.01 16 17 Si 0.87 19.38 26.97 -169.99 -4.59 14.79 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.26 -5.67 6.74 56.52 0.38 -5.29 16 21 C -0.02 -0.56 4.38 -104.62 -0.46 -1.02 16 22 C -0.07 -1.58 8.22 -39.59 -0.33 -1.91 16 23 C -0.13 -2.46 10.05 -39.59 -0.40 -2.86 16 24 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 25 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 26 C -0.13 -2.71 9.67 -39.59 -0.38 -3.09 16 27 C -0.13 -1.78 5.67 -26.65 -0.15 -1.93 16 28 C 0.05 0.64 4.67 -3.83 -0.02 0.62 16 29 H 0.06 0.49 6.22 -51.92 -0.32 0.16 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.55 6.63 -51.93 -0.34 0.21 16 34 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.04 0.43 6.63 -51.93 -0.34 0.09 16 37 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 40 H 0.08 1.39 7.58 -51.93 -0.39 0.99 16 41 H 0.40 7.09 8.60 -40.82 -0.35 6.74 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.12 2.70 7.51 -52.49 -0.39 2.30 16 44 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 45 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.11 2.04 7.96 -52.49 -0.42 1.62 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.04 0.44 6.71 -51.93 -0.35 0.09 16 51 H 0.08 0.84 5.90 -51.93 -0.31 0.54 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -29.29 393.86 -10.65 -39.94 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -8.43 Total: 13.01 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.09 Total: -15.87 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.56 Total: -44.55 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.59 Total: 14.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.29 -10.65 -39.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412373482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.290 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds