Wall clock time and date at job start Sat Apr 11 2020 02:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46939 * 2 1 4 4 C 1.52997 * 109.47158 * 120.00081 * 2 1 3 5 5 C 1.53772 * 113.61592 * 281.75422 * 4 2 1 6 6 C 1.53785 * 87.08225 * 220.01623 * 5 4 2 7 7 C 1.53780 * 113.61617 * 184.25077 * 4 2 1 8 8 N 1.46506 * 109.47039 * 240.00512 * 2 1 3 9 9 C 1.46500 * 119.99769 * 299.99891 * 8 2 1 10 10 C 1.34775 * 119.99850 * 120.00235 * 8 2 1 11 11 O 1.21586 * 120.00138 * 359.97438 * 10 8 2 12 12 N 1.34773 * 119.99704 * 179.97438 * 10 8 2 13 13 C 1.46499 * 120.00337 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.46910 * 325.00440 * 13 12 10 15 15 C 1.52991 * 109.47761 * 205.00021 * 13 12 10 16 16 C 1.50700 * 109.47306 * 64.99725 * 15 13 12 17 17 H 1.07999 * 119.99802 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00108 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47250 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46969 * 120.00230 * 20 18 16 23 23 H 1.48497 * 109.47028 * 240.00024 * 20 18 16 24 24 C 1.50709 * 109.46977 * 84.99566 * 13 12 10 25 25 C 1.38242 * 119.99570 * 39.73104 * 24 13 12 26 26 C 1.38231 * 119.99698 * 179.78316 * 25 24 13 27 27 C 1.38246 * 120.00182 * 0.44812 * 26 25 24 28 28 C 1.38234 * 119.99380 * 359.80653 * 27 26 25 29 29 C 1.38230 * 120.00253 * 220.00247 * 24 13 12 30 30 H 1.08997 * 109.46973 * 185.36963 * 1 2 3 31 31 H 1.08996 * 109.47394 * 305.37064 * 1 2 3 32 32 H 1.09000 * 109.47002 * 65.36923 * 1 2 3 33 33 H 1.09001 * 112.90584 * 53.00891 * 4 2 1 34 34 H 1.08996 * 113.61946 * 334.56749 * 5 4 2 35 35 H 1.09002 * 113.61500 * 105.47126 * 5 4 2 36 36 H 1.09002 * 113.61670 * 270.88521 * 6 5 4 37 37 H 1.09001 * 113.68929 * 139.98791 * 6 5 4 38 38 H 1.08994 * 113.61940 * 254.53190 * 7 4 2 39 39 H 1.09005 * 113.61285 * 25.43766 * 7 4 2 40 40 H 1.08994 * 109.46802 * 90.00157 * 9 8 2 41 41 H 1.09002 * 109.46773 * 210.00272 * 9 8 2 42 42 H 1.08998 * 109.47012 * 329.99758 * 9 8 2 43 43 H 0.97007 * 120.00364 * 359.97438 * 12 10 8 44 44 H 1.09003 * 109.47489 * 185.00101 * 15 13 12 45 45 H 1.09007 * 109.47051 * 304.99658 * 15 13 12 46 46 H 0.96991 * 120.00310 * 180.02562 * 19 18 16 47 47 H 1.07992 * 119.99894 * 359.97438 * 25 24 13 48 48 H 1.07997 * 120.00429 * 180.27669 * 26 25 24 49 49 H 1.07994 * 120.00133 * 179.83108 * 27 26 25 50 50 H 1.08008 * 119.99468 * 180.02562 * 28 27 26 51 51 H 1.08004 * 120.00226 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.9748 0.1351 2.5247 6 6 3.3394 -0.4647 2.9029 7 6 3.5701 -0.6870 1.3988 8 7 2.0184 -0.6905 -1.1963 9 6 1.6644 -2.0931 -1.4282 10 6 2.7932 -0.0355 -2.0833 11 8 3.0866 1.1287 -1.8910 12 7 3.2429 -0.6709 -3.1836 13 6 4.0847 0.0412 -4.1482 14 1 3.7671 1.0822 -4.2086 15 6 3.9499 -0.6138 -5.5242 16 6 2.5387 -0.4443 -6.0251 17 1 1.8109 0.0787 -5.4225 18 6 2.1768 -0.9570 -7.2528 19 7 3.0628 -1.5944 -7.9864 20 14 0.4277 -0.7462 -7.8740 21 1 -0.3680 0.0024 -6.8683 22 1 0.4442 0.0084 -9.1529 23 1 -0.1833 -2.0815 -8.0951 24 6 5.5227 -0.0200 -3.7013 25 6 6.0268 -1.1843 -3.1523 26 6 7.3470 -1.2419 -2.7465 27 6 8.1606 -0.1324 -2.8813 28 6 7.6550 1.0334 -3.4254 29 6 6.3360 1.0896 -3.8353 30 1 -0.3633 -1.0231 0.0962 31 1 -0.3634 0.5948 0.8379 32 1 -0.3633 0.4283 -0.9342 33 1 1.6119 -1.7165 1.3690 34 1 2.0072 1.2075 2.3329 35 1 1.1696 -0.1506 3.2017 36 1 3.2664 -1.3898 3.4748 37 1 4.0260 0.2553 3.3482 38 1 4.0530 -1.6363 1.1668 39 1 4.0389 0.1607 0.8990 40 1 0.7376 -2.1442 -1.9995 41 1 2.4629 -2.5817 -1.9865 42 1 1.5296 -2.5968 -0.4710 43 1 3.0091 -1.5998 -3.3368 44 1 4.6421 -0.1412 -6.2210 45 1 4.1824 -1.6759 -5.4453 46 1 2.8083 -1.9547 -8.8502 47 1 5.3901 -2.0497 -3.0432 48 1 7.7421 -2.1528 -2.3217 49 1 9.1913 -0.1766 -2.5618 50 1 8.2908 1.9001 -3.5311 51 1 5.9411 2.0005 -4.2606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356959310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:40 Heat of formation + Delta-G solvation = 8.363349 kcal Electronic energy + Delta-G solvation = -29460.222505 eV Core-core repulsion = 25745.846490 eV Total energy + Delta-G solvation = -3714.376015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.24806 -39.10634 -38.26722 -35.57734 -34.88034 -32.76876 -31.69890 -30.48284 -30.04329 -28.63289 -26.71535 -25.86831 -25.40319 -24.81469 -22.27459 -22.03533 -21.76155 -19.96829 -19.53925 -19.08824 -17.72013 -16.71748 -16.25950 -16.08087 -15.51531 -15.39428 -14.79301 -14.67733 -14.55961 -14.44218 -13.66890 -13.41231 -13.19723 -12.94952 -12.81591 -12.77648 -12.61133 -12.47458 -12.42028 -12.28478 -12.07853 -11.95112 -11.82325 -11.48394 -11.09980 -11.04330 -10.89008 -10.70574 -10.58021 -10.55544 -10.40322 -10.39485 -10.23289 -9.73598 -9.51695 -9.24675 -8.53751 -8.46844 -8.43540 -8.16202 -8.07025 -6.07181 -4.09927 1.83660 1.85776 3.06308 3.26710 3.35425 3.40236 3.75299 4.22716 4.40833 4.46191 4.58344 4.63134 4.66835 4.83833 5.17458 5.21504 5.24294 5.29618 5.31098 5.32169 5.40412 5.42534 5.58380 5.59494 5.60473 5.62653 5.73448 5.76817 5.81471 5.83106 5.95237 5.96325 5.99530 6.05281 6.16573 6.20334 6.25725 6.41222 6.45953 6.48947 6.64082 6.82468 6.89720 6.90828 7.03647 7.17719 7.36949 7.46148 7.54816 7.71662 7.90424 8.29043 8.54002 8.96456 9.17637 9.54891 11.03467 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.004670 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.708237 B = 5993.922245 C = 8476.081434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.165 3.835 3 H 0.101 0.899 4 C -0.120 4.120 5 C -0.130 4.130 6 C -0.144 4.144 7 C -0.127 4.127 8 N -0.629 5.629 9 C 0.082 3.918 10 C 0.707 3.293 11 O -0.599 6.599 12 N -0.716 5.716 13 C 0.201 3.799 14 H 0.085 0.915 15 C 0.024 3.976 16 C -0.516 4.516 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.069 4.069 25 C -0.106 4.106 26 C -0.126 4.126 27 C -0.136 4.136 28 C -0.123 4.123 29 C -0.108 4.108 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.396 0.604 44 H 0.034 0.966 45 H 0.023 0.977 46 H 0.261 0.739 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.115 0.885 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -1.381 18.402 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.060 3.940 3 H 0.119 0.881 4 C -0.139 4.139 5 C -0.168 4.168 6 C -0.181 4.181 7 C -0.165 4.165 8 N -0.366 5.366 9 C -0.062 4.062 10 C 0.408 3.592 11 O -0.478 6.478 12 N -0.369 5.369 13 C 0.096 3.904 14 H 0.103 0.897 15 C -0.014 4.014 16 C -0.554 4.554 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.070 4.070 25 C -0.124 4.124 26 C -0.144 4.144 27 C -0.154 4.154 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.232 0.768 44 H 0.053 0.947 45 H 0.041 0.959 46 H 0.070 0.930 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.130 0.870 50 H 0.133 0.867 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.549 -0.625 18.327 18.403 hybrid contribution -1.079 -0.614 -0.627 1.391 sum 0.470 -1.239 17.701 17.750 Atomic orbital electron populations 1.22127 0.95527 1.01878 1.02260 1.20865 0.93231 0.97483 0.82381 0.88139 1.22917 0.96967 0.99549 0.94501 1.22867 0.97435 0.99824 0.96670 1.22820 0.97544 1.00807 0.96955 1.22807 0.95753 1.02283 0.95629 1.46963 1.54231 1.12000 1.23454 1.21611 1.00780 0.82271 1.01530 1.15914 0.78488 0.84671 0.80090 1.90844 1.63717 1.15569 1.77637 1.45270 1.54045 1.15575 1.22030 1.20105 0.83038 0.97924 0.89341 0.89657 1.19395 0.97893 0.96074 0.88019 1.21176 0.95634 1.35886 1.02730 0.92350 1.24980 0.97198 0.95199 0.96774 1.69965 1.33793 1.37295 1.12116 0.86560 0.84975 0.77755 0.78879 1.19772 1.21001 1.21086 1.20611 0.97250 0.93193 0.95972 1.20861 0.95032 0.97617 0.98888 1.21019 0.94213 0.98119 1.01014 1.20972 0.99241 0.93743 1.01453 1.21029 0.95554 0.97776 0.99760 1.21011 0.93712 0.98206 0.99695 0.92666 0.91838 0.92149 0.89425 0.89950 0.91649 0.90566 0.91671 0.92018 0.89815 0.92766 0.91579 0.91463 0.76833 0.94733 0.95860 0.92979 0.86831 0.86901 0.86954 0.86699 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.06 37.16 0.34 -1.41 16 2 C 0.16 2.09 2.36 -67.93 -0.16 1.93 16 3 H 0.10 1.53 6.79 -51.93 -0.35 1.18 16 4 C -0.12 -1.24 2.72 -89.81 -0.24 -1.48 16 5 C -0.13 -1.18 7.58 -25.92 -0.20 -1.37 16 6 C -0.14 -1.32 8.08 -25.92 -0.21 -1.53 16 7 C -0.13 -1.44 7.49 -25.92 -0.19 -1.64 16 8 N -0.63 -9.12 2.61 -179.67 -0.47 -9.59 16 9 C 0.08 0.95 9.37 59.85 0.56 1.51 16 10 C 0.71 13.17 8.24 -86.92 -0.72 12.46 16 11 O -0.60 -13.17 15.33 5.29 0.08 -13.09 16 12 N -0.72 -13.40 3.89 -59.82 -0.23 -13.63 16 13 C 0.20 4.20 2.12 -69.08 -0.15 4.05 16 14 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 15 C 0.02 0.57 4.50 -27.89 -0.13 0.45 16 16 C -0.52 -13.76 8.84 -34.44 -0.30 -14.07 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 20 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.07 -1.31 4.92 -104.62 -0.51 -1.83 16 25 C -0.11 -1.82 9.33 -39.58 -0.37 -2.19 16 26 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 27 C -0.14 -1.99 10.05 -39.58 -0.40 -2.38 16 28 C -0.12 -1.91 10.05 -39.58 -0.40 -2.30 16 29 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 30 H 0.05 0.53 7.85 -51.93 -0.41 0.13 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.82 7.15 -51.93 -0.37 0.45 16 34 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 42 H 0.07 0.62 6.67 -51.93 -0.35 0.27 16 43 H 0.40 6.89 6.33 -40.82 -0.26 6.63 16 44 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.11 1.85 7.71 -52.49 -0.40 1.44 16 48 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 49 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 50 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 51 H 0.12 2.06 8.04 -52.48 -0.42 1.64 16 LS Contribution 409.80 15.07 6.18 6.18 Total: -1.00 -31.19 409.80 -11.42 -42.61 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -8.73 Total: 9.18 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -3.96 Total: -12.88 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.04 Total: -48.13 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.19 -11.42 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356959310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.971 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds