Wall clock time and date at job start Sat Apr 11 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46939 * 2 1 4 4 C 1.52997 * 109.47158 * 120.00081 * 2 1 3 5 5 C 1.53772 * 113.61592 * 281.75422 * 4 2 1 6 6 C 1.53785 * 87.08225 * 220.01623 * 5 4 2 7 7 C 1.53780 * 113.61617 * 184.25077 * 4 2 1 8 8 N 1.46506 * 109.47039 * 240.00512 * 2 1 3 9 9 C 1.46500 * 119.99769 * 299.99891 * 8 2 1 10 10 C 1.34775 * 119.99850 * 120.00235 * 8 2 1 11 11 O 1.21586 * 120.00138 * 359.97438 * 10 8 2 12 12 N 1.34773 * 119.99704 * 179.97438 * 10 8 2 13 13 C 1.46499 * 120.00337 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.46910 * 325.00440 * 13 12 10 15 15 C 1.52991 * 109.47761 * 205.00021 * 13 12 10 16 16 C 1.50700 * 109.47306 * 64.99725 * 15 13 12 17 17 H 1.07999 * 119.99802 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00108 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47250 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46969 * 120.00230 * 20 18 16 23 23 H 1.48497 * 109.47028 * 240.00024 * 20 18 16 24 24 C 1.50709 * 109.46977 * 84.99566 * 13 12 10 25 25 C 1.38242 * 119.99570 * 39.73104 * 24 13 12 26 26 C 1.38231 * 119.99698 * 179.78316 * 25 24 13 27 27 C 1.38246 * 120.00182 * 0.44812 * 26 25 24 28 28 C 1.38234 * 119.99380 * 359.80653 * 27 26 25 29 29 C 1.38230 * 120.00253 * 220.00247 * 24 13 12 30 30 H 1.08997 * 109.46973 * 185.36963 * 1 2 3 31 31 H 1.08996 * 109.47394 * 305.37064 * 1 2 3 32 32 H 1.09000 * 109.47002 * 65.36923 * 1 2 3 33 33 H 1.09001 * 112.90584 * 53.00891 * 4 2 1 34 34 H 1.08996 * 113.61946 * 334.56749 * 5 4 2 35 35 H 1.09002 * 113.61500 * 105.47126 * 5 4 2 36 36 H 1.09002 * 113.61670 * 270.88521 * 6 5 4 37 37 H 1.09001 * 113.68929 * 139.98791 * 6 5 4 38 38 H 1.08994 * 113.61940 * 254.53190 * 7 4 2 39 39 H 1.09005 * 113.61285 * 25.43766 * 7 4 2 40 40 H 1.08994 * 109.46802 * 90.00157 * 9 8 2 41 41 H 1.09002 * 109.46773 * 210.00272 * 9 8 2 42 42 H 1.08998 * 109.47012 * 329.99758 * 9 8 2 43 43 H 0.97007 * 120.00364 * 359.97438 * 12 10 8 44 44 H 1.09003 * 109.47489 * 185.00101 * 15 13 12 45 45 H 1.09007 * 109.47051 * 304.99658 * 15 13 12 46 46 H 0.96991 * 120.00310 * 180.02562 * 19 18 16 47 47 H 1.07992 * 119.99894 * 359.97438 * 25 24 13 48 48 H 1.07997 * 120.00429 * 180.27669 * 26 25 24 49 49 H 1.07994 * 120.00133 * 179.83108 * 27 26 25 50 50 H 1.08008 * 119.99468 * 180.02562 * 28 27 26 51 51 H 1.08004 * 120.00226 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.9748 0.1351 2.5247 6 6 3.3394 -0.4647 2.9029 7 6 3.5701 -0.6870 1.3988 8 7 2.0184 -0.6905 -1.1963 9 6 1.6644 -2.0931 -1.4282 10 6 2.7932 -0.0355 -2.0833 11 8 3.0866 1.1287 -1.8910 12 7 3.2429 -0.6709 -3.1836 13 6 4.0847 0.0412 -4.1482 14 1 3.7671 1.0822 -4.2086 15 6 3.9499 -0.6138 -5.5242 16 6 2.5387 -0.4443 -6.0251 17 1 1.8109 0.0787 -5.4225 18 6 2.1768 -0.9570 -7.2528 19 7 3.0628 -1.5944 -7.9864 20 14 0.4277 -0.7462 -7.8740 21 1 -0.3680 0.0024 -6.8683 22 1 0.4442 0.0084 -9.1529 23 1 -0.1833 -2.0815 -8.0951 24 6 5.5227 -0.0200 -3.7013 25 6 6.0268 -1.1843 -3.1523 26 6 7.3470 -1.2419 -2.7465 27 6 8.1606 -0.1324 -2.8813 28 6 7.6550 1.0334 -3.4254 29 6 6.3360 1.0896 -3.8353 30 1 -0.3633 -1.0231 0.0962 31 1 -0.3634 0.5948 0.8379 32 1 -0.3633 0.4283 -0.9342 33 1 1.6119 -1.7165 1.3690 34 1 2.0072 1.2075 2.3329 35 1 1.1696 -0.1506 3.2017 36 1 3.2664 -1.3898 3.4748 37 1 4.0260 0.2553 3.3482 38 1 4.0530 -1.6363 1.1668 39 1 4.0389 0.1607 0.8990 40 1 0.7376 -2.1442 -1.9995 41 1 2.4629 -2.5817 -1.9865 42 1 1.5296 -2.5968 -0.4710 43 1 3.0091 -1.5998 -3.3368 44 1 4.6421 -0.1412 -6.2210 45 1 4.1824 -1.6759 -5.4453 46 1 2.8083 -1.9547 -8.8502 47 1 5.3901 -2.0497 -3.0432 48 1 7.7421 -2.1528 -2.3217 49 1 9.1913 -0.1766 -2.5618 50 1 8.2908 1.9001 -3.5311 51 1 5.9411 2.0005 -4.2606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356959310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:39 Heat of formation + Delta-G solvation = -6.660271 kcal Electronic energy + Delta-G solvation = -29460.873978 eV Core-core repulsion = 25745.846490 eV Total energy + Delta-G solvation = -3715.027488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.55012 -40.29172 -39.43531 -36.95635 -36.35957 -34.74779 -33.02096 -31.74869 -31.26287 -30.43644 -27.79222 -26.90556 -26.44963 -26.22061 -23.81750 -23.49549 -22.95498 -21.38005 -20.67607 -20.18790 -19.08501 -18.53066 -17.75242 -17.40825 -16.76466 -16.55561 -16.31164 -16.03762 -15.88817 -15.63641 -15.01361 -14.80603 -14.53550 -14.31366 -14.19405 -13.95892 -13.69294 -13.67550 -13.57103 -13.50536 -13.33389 -13.23254 -12.94334 -12.84395 -12.65862 -12.61578 -12.44752 -12.14167 -11.97280 -11.87053 -11.58954 -11.45562 -11.31737 -11.27779 -11.06528 -11.01311 -10.59432 -10.04951 -9.75316 -9.53241 -9.34203 -8.20680 -6.30523 0.52127 0.56567 1.36719 1.39574 1.51220 1.77903 2.27935 2.39311 2.92952 3.10552 3.19789 3.69640 3.77499 3.81792 4.00982 4.02649 4.03738 4.20591 4.27103 4.29679 4.31843 4.34265 4.44518 4.46319 4.64411 4.67022 4.75615 4.78452 4.80149 4.86646 4.89168 4.90630 4.92923 5.06722 5.09550 5.12922 5.13584 5.20187 5.28177 5.30458 5.37921 5.42957 5.61496 5.62862 5.64146 5.65749 5.68996 5.77868 5.94322 6.10165 6.16659 6.21445 6.81600 7.11116 7.38291 7.70563 8.90295 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.004670 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.708237 B = 5993.922245 C = 8476.081434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.124 4.124 6 C -0.134 4.134 7 C -0.135 4.135 8 N -0.622 5.622 9 C 0.076 3.924 10 C 0.701 3.299 11 O -0.640 6.640 12 N -0.712 5.712 13 C 0.218 3.782 14 H 0.052 0.948 15 C 0.039 3.961 16 C -0.526 4.526 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.925 5.925 20 Si 0.956 3.044 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.273 1.273 24 C -0.096 4.096 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.129 4.129 28 C -0.123 4.123 29 C -0.134 4.134 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.402 0.598 44 H 0.004 0.996 45 H 0.012 0.988 46 H 0.264 0.736 47 H 0.117 0.883 48 H 0.146 0.854 49 H 0.151 0.849 50 H 0.143 0.857 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.054 -3.133 20.717 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.057 3.943 3 H 0.084 0.916 4 C -0.130 4.130 5 C -0.162 4.162 6 C -0.171 4.171 7 C -0.173 4.173 8 N -0.358 5.358 9 C -0.067 4.067 10 C 0.403 3.597 11 O -0.522 6.522 12 N -0.366 5.366 13 C 0.112 3.888 14 H 0.070 0.930 15 C 0.002 3.998 16 C -0.564 4.564 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.565 5.565 20 Si 0.782 3.218 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.097 4.097 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.141 4.141 29 C -0.152 4.152 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.129 0.871 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.239 0.761 44 H 0.023 0.977 45 H 0.030 0.970 46 H 0.073 0.927 47 H 0.135 0.865 48 H 0.164 0.836 49 H 0.169 0.831 50 H 0.161 0.839 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.258 -2.409 20.671 20.849 hybrid contribution -0.924 -0.047 -1.320 1.613 sum 0.334 -2.456 19.351 19.509 Atomic orbital electron populations 1.22071 0.93715 1.03381 1.01844 1.21017 0.94525 0.96063 0.82742 0.91590 1.22922 0.95921 1.00585 0.93579 1.22841 0.98229 0.99044 0.96117 1.22813 0.97371 1.01691 0.95242 1.22749 0.96411 1.00699 0.97439 1.47048 1.52745 1.13110 1.22890 1.21846 1.00800 0.80485 1.03550 1.16082 0.78891 0.84299 0.80444 1.90806 1.65353 1.17528 1.78551 1.45064 1.54087 1.15618 1.21862 1.19559 0.85183 0.95646 0.88407 0.93018 1.19122 0.96091 0.95137 0.89456 1.21373 0.96428 1.35627 1.02993 0.93281 1.25747 1.01153 0.94803 0.96894 1.70069 1.35748 1.38109 1.12561 0.85533 0.80150 0.78071 0.78064 1.19687 1.20711 1.19844 1.20491 0.96128 0.94862 0.98267 1.21000 0.96471 0.96971 0.99235 1.21418 0.93145 0.99717 0.99906 1.21453 1.00892 0.92719 0.99648 1.21374 0.94552 0.99445 0.98756 1.21159 0.95261 0.97818 1.01001 0.90532 0.89901 0.94512 0.87068 0.91046 0.89276 0.88524 0.91759 0.92049 0.93506 0.92483 0.91587 0.88095 0.76120 0.97735 0.96997 0.92686 0.86518 0.83644 0.83085 0.83893 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.06 71.98 0.65 -2.46 16 2 C 0.16 4.04 2.36 44.99 0.11 4.14 16 3 H 0.07 2.14 6.79 -2.39 -0.02 2.12 16 4 C -0.11 -2.08 2.72 -10.27 -0.03 -2.11 16 5 C -0.12 -1.98 7.58 31.12 0.24 -1.74 16 6 C -0.13 -2.17 8.08 31.12 0.25 -1.92 16 7 C -0.14 -2.98 7.49 31.12 0.23 -2.75 16 8 N -0.62 -18.21 2.61 -840.61 -2.19 -20.41 16 9 C 0.08 1.65 9.37 127.77 1.20 2.85 16 10 C 0.70 27.57 8.24 179.06 1.48 29.05 16 11 O -0.64 -30.28 15.33 -3.99 -0.06 -30.34 16 12 N -0.71 -28.21 3.89 -461.42 -1.79 -30.00 16 13 C 0.22 9.82 2.12 44.25 0.09 9.91 16 14 H 0.05 2.63 7.44 -2.39 -0.02 2.62 16 15 C 0.04 2.04 4.50 29.85 0.13 2.17 16 16 C -0.53 -29.25 8.84 25.60 0.23 -29.02 16 17 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 18 C 0.01 0.71 5.46 84.65 0.46 1.17 16 19 N -0.92 -54.31 13.29 21.45 0.28 -54.02 16 20 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C -0.10 -3.87 4.92 -19.86 -0.10 -3.96 16 25 C -0.12 -4.14 9.33 22.27 0.21 -3.93 16 26 C -0.12 -3.55 10.05 22.27 0.22 -3.32 16 27 C -0.13 -3.46 10.05 22.27 0.22 -3.23 16 28 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 29 C -0.13 -5.03 9.67 22.27 0.22 -4.82 16 30 H 0.08 1.25 7.85 -2.39 -0.02 1.23 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.62 7.15 -2.39 -0.02 1.60 16 34 H 0.07 1.30 8.02 -2.39 -0.02 1.28 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 1.38 8.10 -2.38 -0.02 1.36 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.45 6.36 -2.39 -0.02 1.44 16 42 H 0.10 1.53 6.67 -2.39 -0.02 1.52 16 43 H 0.40 14.59 6.33 -92.70 -0.59 14.01 16 44 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 47 H 0.12 3.86 7.71 -2.91 -0.02 3.84 16 48 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 49 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 50 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 51 H 0.11 4.17 8.04 -2.91 -0.02 4.15 16 Total: -1.00 -71.86 409.80 4.61 -67.25 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.31 Total: 34.97 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 6.04 Total: -13.47 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -3.70 Total: -104.43 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.06 Total: -30.34 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.86 4.61 -67.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356959310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.589 kcal (2) G-P(sol) polarization free energy of solvation -71.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds