Wall clock time and date at job start Sat Apr 11 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.91830 * 2 1 4 4 C 1.55160 * 111.00585 * 236.09516 * 2 1 3 5 5 C 1.54309 * 102.86707 * 206.22630 * 4 2 1 6 6 H 1.08994 * 109.99253 * 263.05215 * 5 4 2 7 7 C 1.50701 * 109.77276 * 141.88416 * 5 4 2 8 8 C 1.38236 * 120.00411 * 280.52923 * 7 5 4 9 9 C 1.38237 * 119.99956 * 179.80898 * 8 7 5 10 10 C 1.38235 * 120.00022 * 0.41762 * 9 8 7 11 11 C 1.38230 * 119.99950 * 359.81379 * 10 9 8 12 12 C 1.38238 * 120.00408 * 359.97438 * 11 10 9 13 13 N 1.47025 * 107.27471 * 22.52982 * 5 4 2 14 14 C 1.34777 * 125.64744 * 180.96249 * 13 5 4 15 15 O 1.21579 * 119.99941 * 359.72345 * 14 13 5 16 16 N 1.34774 * 119.99545 * 179.71714 * 14 13 5 17 17 C 1.46504 * 119.99815 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47415 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47124 * 59.99442 * 18 17 16 20 20 C 1.53000 * 109.46989 * 299.99767 * 18 17 16 21 21 C 1.50694 * 109.47168 * 179.97438 * 18 17 16 22 22 H 1.08000 * 120.00563 * 359.97438 * 21 18 17 23 23 C 1.37885 * 119.99902 * 179.97438 * 21 18 17 24 24 N 1.31516 * 119.99913 * 0.02562 * 23 21 18 25 25 Si 1.86805 * 119.99854 * 179.72538 * 23 21 18 26 26 H 1.48504 * 109.47032 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46816 * 120.00323 * 25 23 21 28 28 H 1.48495 * 109.46630 * 240.00111 * 25 23 21 29 29 C 1.47428 * 108.70174 * 0.70262 * 13 5 4 30 30 H 1.09004 * 109.46991 * 297.54976 * 1 2 3 31 31 H 1.08997 * 109.47433 * 57.55284 * 1 2 3 32 32 H 1.09007 * 109.47078 * 177.55010 * 1 2 3 33 33 H 1.09003 * 110.72024 * 324.79163 * 4 2 1 34 34 H 1.09003 * 110.71528 * 87.88090 * 4 2 1 35 35 H 1.07994 * 119.99909 * 359.97438 * 8 7 5 36 36 H 1.07996 * 119.99618 * 180.20370 * 9 8 7 37 37 H 1.07999 * 120.00013 * 179.78410 * 10 9 8 38 38 H 1.08002 * 120.00298 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00096 * 179.97438 * 12 11 10 40 40 H 0.96996 * 120.00568 * 0.02562 * 16 14 13 41 41 H 1.09000 * 109.46981 * 59.99638 * 17 16 14 42 42 H 1.09002 * 109.46732 * 299.99696 * 17 16 14 43 43 H 1.08995 * 109.47131 * 180.02562 * 19 18 17 44 44 H 1.08998 * 109.47544 * 300.00581 * 19 18 17 45 45 H 1.09007 * 109.46721 * 60.00490 * 19 18 17 46 46 H 1.09000 * 109.47156 * 300.00206 * 20 18 17 47 47 H 1.08998 * 109.47223 * 59.99698 * 20 18 17 48 48 H 1.08995 * 109.47095 * 179.97438 * 20 18 17 49 49 H 0.97001 * 119.99646 * 180.02562 * 24 23 21 50 50 H 1.08996 * 110.36452 * 94.93793 * 29 13 5 51 51 H 1.08998 * 110.36541 * 217.14995 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0862 -0.8080 -1.2022 5 6 3.4691 -1.2689 -0.6961 6 1 4.2428 -0.5910 -1.0568 7 6 3.7468 -2.6701 -1.1763 8 6 3.1798 -3.7492 -0.5245 9 6 3.4314 -5.0343 -0.9675 10 6 4.2568 -5.2407 -2.0570 11 6 4.8275 -4.1618 -2.7059 12 6 4.5725 -2.8764 -2.2657 13 7 3.4272 -1.2431 0.7733 14 6 4.4481 -1.5603 1.5939 15 8 5.5161 -1.9088 1.1289 16 7 4.2852 -1.4912 2.9300 17 6 5.3951 -1.8355 3.8221 18 6 4.9494 -1.6736 5.2768 19 6 3.7654 -2.6023 5.5538 20 6 4.5285 -0.2234 5.5228 21 6 6.0909 -2.0284 6.1943 22 1 7.0394 -2.3388 5.7814 23 6 5.9245 -1.9568 7.5612 24 7 4.7694 -1.5794 8.0642 25 14 7.3372 -2.4040 8.6988 26 1 8.5181 -2.7994 7.8897 27 1 7.6848 -1.2313 9.5409 28 1 6.9318 -3.5362 9.5698 29 6 2.0853 -0.8067 1.2003 30 1 -0.3633 0.4753 0.9112 31 1 -0.3634 0.5513 -0.8672 32 1 -0.3634 -1.0268 -0.0439 33 1 1.4468 -1.6632 -1.4210 34 1 2.1892 -0.1707 -2.0805 35 1 2.5383 -3.5882 0.3292 36 1 2.9858 -5.8772 -0.4602 37 1 4.4561 -6.2448 -2.4010 38 1 5.4727 -4.3230 -3.5569 39 1 5.0188 -2.0336 -2.7724 40 1 3.4331 -1.2135 3.3010 41 1 6.2384 -1.1736 3.6250 42 1 5.6952 -2.8686 3.6465 43 1 3.4476 -2.4866 6.5899 44 1 2.9396 -2.3461 4.8901 45 1 4.0654 -3.6355 5.3785 46 1 5.3719 0.4382 5.3254 47 1 3.7027 0.0328 4.8591 48 1 4.2105 -0.1082 6.5590 49 1 4.6526 -1.5287 9.0258 50 1 1.4520 -1.6704 1.4024 51 1 2.1558 -0.1736 2.0848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459242597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:48 Heat of formation + Delta-G solvation = -9.736055 kcal Electronic energy + Delta-G solvation = -29311.250399 eV Core-core repulsion = 25596.089535 eV Total energy + Delta-G solvation = -3715.160864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56748 -38.80998 -37.69427 -36.20584 -33.32511 -33.00777 -31.89697 -30.82812 -30.48333 -28.57893 -26.45768 -25.70318 -25.54948 -24.83896 -23.34723 -22.52559 -21.26979 -20.59393 -19.40353 -18.75924 -17.84368 -16.96065 -16.39917 -15.78269 -15.37934 -14.85223 -14.81012 -14.76654 -14.51172 -13.89286 -13.73423 -13.56025 -13.34170 -13.22904 -13.05640 -12.88475 -12.68818 -12.44931 -12.32687 -12.13874 -12.10756 -11.54462 -11.34525 -11.19562 -11.17464 -10.99800 -10.88464 -10.85960 -10.76897 -10.63722 -10.36104 -10.18281 -9.68347 -9.60618 -9.28279 -8.84012 -8.76732 -8.74295 -8.55092 -8.38138 -8.07710 -6.00325 -4.09829 1.39656 1.48269 2.93797 3.28614 3.37141 3.42564 3.67207 3.83704 4.23410 4.36684 4.44155 4.56270 4.63820 4.86355 4.92639 5.03535 5.11993 5.15615 5.23121 5.26620 5.28710 5.38787 5.47723 5.53860 5.62392 5.64339 5.69529 5.81677 5.88244 6.01690 6.06998 6.11287 6.20614 6.39964 6.40332 6.50665 6.53346 6.56171 6.68925 6.84193 6.84772 6.96583 7.05781 7.06044 7.15138 7.37600 7.47094 7.58226 7.72084 8.03258 8.14924 8.40794 8.49810 8.90398 9.11561 9.55825 11.01177 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.003220 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.038712 B = 8694.429557 C = 9925.996099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.086 0.914 4 C -0.118 4.118 5 C 0.197 3.803 6 H 0.080 0.920 7 C -0.078 4.078 8 C -0.097 4.097 9 C -0.121 4.121 10 C -0.124 4.124 11 C -0.122 4.122 12 C -0.107 4.107 13 N -0.636 5.636 14 C 0.716 3.284 15 O -0.587 6.587 16 N -0.732 5.732 17 C 0.151 3.849 18 C 0.056 3.944 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.503 4.503 22 H 0.058 0.942 23 C 0.066 3.934 24 N -0.886 5.886 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 C 0.102 3.898 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.392 0.608 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.004 0.996 48 H 0.085 0.915 49 H 0.259 0.741 50 H 0.065 0.935 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.536 0.844 -19.457 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.104 0.896 4 C -0.156 4.156 5 C 0.092 3.908 6 H 0.098 0.902 7 C -0.079 4.079 8 C -0.115 4.115 9 C -0.139 4.139 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.125 4.125 13 N -0.376 5.376 14 C 0.418 3.582 15 O -0.465 6.465 16 N -0.386 5.386 17 C 0.028 3.972 18 C 0.055 3.945 19 C -0.186 4.186 20 C -0.186 4.186 21 C -0.542 4.542 22 H 0.076 0.924 23 C -0.135 4.135 24 N -0.525 5.525 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 C -0.021 4.021 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.227 0.773 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.023 0.977 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.023 0.977 48 H 0.104 0.896 49 H 0.069 0.931 50 H 0.084 0.916 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.712 0.583 -19.502 21.794 hybrid contribution 0.428 -0.172 0.959 1.064 sum -9.284 0.411 -18.543 20.741 Atomic orbital electron populations 1.21700 0.93658 1.02279 1.02214 1.22343 0.96170 0.99441 0.94293 0.89551 1.22797 0.94552 1.00251 0.97997 1.20199 0.97755 0.92989 0.79823 0.90245 1.20049 0.97102 0.95208 0.95566 1.20872 0.99607 0.92163 0.98852 1.21103 0.98969 0.96878 0.96963 1.21085 0.97984 0.98682 0.96509 1.21048 1.00049 0.92701 1.00192 1.20915 0.97702 0.97084 0.96829 1.47646 1.11834 1.72779 1.05308 1.15577 0.82654 0.78584 0.81411 1.90900 1.25385 1.54613 1.75586 1.45525 1.17598 1.72010 1.03492 1.21574 0.86815 0.98985 0.89801 1.18363 0.94821 0.92966 0.88322 1.21804 0.96272 0.97877 1.02639 1.21807 0.96986 0.97198 1.02626 1.21031 0.97487 1.45045 0.90639 0.92374 1.24878 0.95691 0.94913 0.98042 1.69818 1.22909 1.47830 1.11963 0.86522 0.82647 0.78024 0.80747 1.19742 1.21086 1.21076 1.22342 0.83994 0.98088 0.97706 0.92065 0.92176 0.92273 0.90155 0.89900 0.86638 0.86392 0.86466 0.86349 0.86351 0.77254 0.93052 0.93045 0.89666 0.97683 0.95497 0.95479 0.97699 0.89644 0.93117 0.91642 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.29 37.16 0.35 -0.56 16 2 C -0.10 -0.85 3.64 -88.47 -0.32 -1.17 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -1.01 5.92 -24.90 -0.15 -1.16 16 5 C 0.20 2.43 3.06 -68.11 -0.21 2.23 16 6 H 0.08 1.03 8.03 -51.93 -0.42 0.62 16 7 C -0.08 -1.05 4.08 -104.62 -0.43 -1.48 16 8 C -0.10 -1.33 9.14 -39.58 -0.36 -1.69 16 9 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 10 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 11 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 12 C -0.11 -1.34 9.68 -39.58 -0.38 -1.72 16 13 N -0.64 -9.10 2.31 -170.01 -0.39 -9.49 16 14 C 0.72 13.53 8.12 -86.92 -0.71 12.82 16 15 O -0.59 -13.39 16.17 5.30 0.09 -13.30 16 16 N -0.73 -13.85 4.92 -65.22 -0.32 -14.17 16 17 C 0.15 3.36 4.50 -4.04 -0.02 3.34 16 18 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 19 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 20 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 21 C -0.50 -13.38 8.01 -34.44 -0.28 -13.65 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 23 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 24 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 25 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 C 0.10 1.11 6.05 -2.53 -0.02 1.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.38 8.11 -51.92 -0.42 -0.04 16 33 H 0.08 0.67 7.69 -51.93 -0.40 0.28 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.12 1.58 7.68 -52.49 -0.40 1.18 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.27 8.05 -52.49 -0.42 0.85 16 40 H 0.39 6.75 4.64 -40.82 -0.19 6.56 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 44 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 45 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 48 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 49 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 50 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 51 H 0.07 0.81 7.29 -51.93 -0.38 0.43 16 LS Contribution 397.80 15.07 5.99 5.99 Total: -1.00 -30.55 397.80 -11.00 -41.55 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.58 Total: 6.69 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -3.28 Total: -9.96 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.20 Total: -46.88 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.55 -11.00 -41.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459242597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.817 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds