Wall clock time and date at job start Sat Apr 11 2020 02:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.91830 * 2 1 4 4 C 1.55160 * 111.00585 * 236.09516 * 2 1 3 5 5 C 1.54309 * 102.86707 * 206.22630 * 4 2 1 6 6 H 1.08994 * 109.99253 * 263.05215 * 5 4 2 7 7 C 1.50701 * 109.77276 * 141.88416 * 5 4 2 8 8 C 1.38236 * 120.00411 * 280.52923 * 7 5 4 9 9 C 1.38237 * 119.99956 * 179.80898 * 8 7 5 10 10 C 1.38235 * 120.00022 * 0.41762 * 9 8 7 11 11 C 1.38230 * 119.99950 * 359.81379 * 10 9 8 12 12 C 1.38238 * 120.00408 * 359.97438 * 11 10 9 13 13 N 1.47025 * 107.27471 * 22.52982 * 5 4 2 14 14 C 1.34777 * 125.64744 * 180.96249 * 13 5 4 15 15 O 1.21579 * 119.99941 * 359.72345 * 14 13 5 16 16 N 1.34774 * 119.99545 * 179.71714 * 14 13 5 17 17 C 1.46504 * 119.99815 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47415 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47124 * 59.99442 * 18 17 16 20 20 C 1.53000 * 109.46989 * 299.99767 * 18 17 16 21 21 C 1.50694 * 109.47168 * 179.97438 * 18 17 16 22 22 H 1.08000 * 120.00563 * 359.97438 * 21 18 17 23 23 C 1.37885 * 119.99902 * 179.97438 * 21 18 17 24 24 N 1.31516 * 119.99913 * 0.02562 * 23 21 18 25 25 Si 1.86805 * 119.99854 * 179.72538 * 23 21 18 26 26 H 1.48504 * 109.47032 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46816 * 120.00323 * 25 23 21 28 28 H 1.48495 * 109.46630 * 240.00111 * 25 23 21 29 29 C 1.47428 * 108.70174 * 0.70262 * 13 5 4 30 30 H 1.09004 * 109.46991 * 297.54976 * 1 2 3 31 31 H 1.08997 * 109.47433 * 57.55284 * 1 2 3 32 32 H 1.09007 * 109.47078 * 177.55010 * 1 2 3 33 33 H 1.09003 * 110.72024 * 324.79163 * 4 2 1 34 34 H 1.09003 * 110.71528 * 87.88090 * 4 2 1 35 35 H 1.07994 * 119.99909 * 359.97438 * 8 7 5 36 36 H 1.07996 * 119.99618 * 180.20370 * 9 8 7 37 37 H 1.07999 * 120.00013 * 179.78410 * 10 9 8 38 38 H 1.08002 * 120.00298 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00096 * 179.97438 * 12 11 10 40 40 H 0.96996 * 120.00568 * 0.02562 * 16 14 13 41 41 H 1.09000 * 109.46981 * 59.99638 * 17 16 14 42 42 H 1.09002 * 109.46732 * 299.99696 * 17 16 14 43 43 H 1.08995 * 109.47131 * 180.02562 * 19 18 17 44 44 H 1.08998 * 109.47544 * 300.00581 * 19 18 17 45 45 H 1.09007 * 109.46721 * 60.00490 * 19 18 17 46 46 H 1.09000 * 109.47156 * 300.00206 * 20 18 17 47 47 H 1.08998 * 109.47223 * 59.99698 * 20 18 17 48 48 H 1.08995 * 109.47095 * 179.97438 * 20 18 17 49 49 H 0.97001 * 119.99646 * 180.02562 * 24 23 21 50 50 H 1.08996 * 110.36452 * 94.93793 * 29 13 5 51 51 H 1.08998 * 110.36541 * 217.14995 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0862 -0.8080 -1.2022 5 6 3.4691 -1.2689 -0.6961 6 1 4.2428 -0.5910 -1.0568 7 6 3.7468 -2.6701 -1.1763 8 6 3.1798 -3.7492 -0.5245 9 6 3.4314 -5.0343 -0.9675 10 6 4.2568 -5.2407 -2.0570 11 6 4.8275 -4.1618 -2.7059 12 6 4.5725 -2.8764 -2.2657 13 7 3.4272 -1.2431 0.7733 14 6 4.4481 -1.5603 1.5939 15 8 5.5161 -1.9088 1.1289 16 7 4.2852 -1.4912 2.9300 17 6 5.3951 -1.8355 3.8221 18 6 4.9494 -1.6736 5.2768 19 6 3.7654 -2.6023 5.5538 20 6 4.5285 -0.2234 5.5228 21 6 6.0909 -2.0284 6.1943 22 1 7.0394 -2.3388 5.7814 23 6 5.9245 -1.9568 7.5612 24 7 4.7694 -1.5794 8.0642 25 14 7.3372 -2.4040 8.6988 26 1 8.5181 -2.7994 7.8897 27 1 7.6848 -1.2313 9.5409 28 1 6.9318 -3.5362 9.5698 29 6 2.0853 -0.8067 1.2003 30 1 -0.3633 0.4753 0.9112 31 1 -0.3634 0.5513 -0.8672 32 1 -0.3634 -1.0268 -0.0439 33 1 1.4468 -1.6632 -1.4210 34 1 2.1892 -0.1707 -2.0805 35 1 2.5383 -3.5882 0.3292 36 1 2.9858 -5.8772 -0.4602 37 1 4.4561 -6.2448 -2.4010 38 1 5.4727 -4.3230 -3.5569 39 1 5.0188 -2.0336 -2.7724 40 1 3.4331 -1.2135 3.3010 41 1 6.2384 -1.1736 3.6250 42 1 5.6952 -2.8686 3.6465 43 1 3.4476 -2.4866 6.5899 44 1 2.9396 -2.3461 4.8901 45 1 4.0654 -3.6355 5.3785 46 1 5.3719 0.4382 5.3254 47 1 3.7027 0.0328 4.8591 48 1 4.2105 -0.1082 6.5590 49 1 4.6526 -1.5287 9.0258 50 1 1.4520 -1.6704 1.4024 51 1 2.1558 -0.1736 2.0848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459242597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:44 Heat of formation + Delta-G solvation = -24.087142 kcal Electronic energy + Delta-G solvation = -29311.872709 eV Core-core repulsion = 25596.089535 eV Total energy + Delta-G solvation = -3715.783174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 3.85 seconds Orbital eigenvalues (eV) -41.71041 -40.03213 -38.80805 -37.93456 -35.04419 -33.91099 -33.25216 -32.15303 -31.71464 -29.43238 -27.58405 -27.52722 -27.29278 -26.51235 -24.38973 -23.48296 -22.40605 -21.34403 -20.71356 -20.56435 -19.17007 -17.91523 -17.83283 -17.40291 -16.65193 -16.56159 -16.13435 -15.84706 -15.68982 -15.25671 -14.87714 -14.78660 -14.61116 -14.28047 -14.23266 -14.10654 -14.02706 -13.63646 -13.47485 -13.24152 -13.18128 -13.05108 -12.88984 -12.70462 -12.57724 -12.31583 -12.25574 -12.14632 -12.00086 -11.83232 -11.61763 -11.53357 -11.50206 -11.30873 -11.11993 -10.71548 -10.40904 -10.11474 -9.79862 -9.68759 -9.37735 -8.03099 -6.18549 0.44509 0.52183 1.40966 1.44831 1.54350 1.67715 2.20032 2.45514 2.87329 3.15404 3.20495 3.50334 3.69012 3.77726 3.99737 4.04579 4.17022 4.25116 4.31406 4.40411 4.48376 4.50781 4.58336 4.64453 4.65399 4.68713 4.72727 4.85980 4.92199 4.95167 5.02010 5.03421 5.08494 5.10016 5.16204 5.16396 5.17985 5.34028 5.34917 5.37110 5.51149 5.57232 5.61611 5.62276 5.65585 5.66531 5.70257 6.11985 6.13109 6.13696 6.20432 6.42904 6.85140 7.05891 7.49068 7.63444 8.96243 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.003220 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.038712 B = 8694.429557 C = 9925.996099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.091 0.909 4 C -0.106 4.106 5 C 0.190 3.810 6 H 0.070 0.930 7 C -0.092 4.092 8 C -0.117 4.117 9 C -0.135 4.135 10 C -0.132 4.132 11 C -0.126 4.126 12 C -0.122 4.122 13 N -0.630 5.630 14 C 0.713 3.287 15 O -0.632 6.632 16 N -0.725 5.725 17 C 0.170 3.830 18 C 0.053 3.947 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.528 4.528 22 H 0.042 0.958 23 C 0.030 3.970 24 N -0.898 5.898 25 Si 0.945 3.055 26 H -0.277 1.277 27 H -0.280 1.280 28 H -0.280 1.280 29 C 0.092 3.908 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.402 0.598 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.015 0.985 46 H 0.017 0.983 47 H 0.033 0.967 48 H 0.064 0.936 49 H 0.261 0.739 50 H 0.074 0.926 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 1.250 -20.783 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.109 0.891 4 C -0.143 4.143 5 C 0.086 3.914 6 H 0.088 0.912 7 C -0.093 4.093 8 C -0.135 4.135 9 C -0.153 4.153 10 C -0.149 4.149 11 C -0.144 4.144 12 C -0.141 4.141 13 N -0.367 5.367 14 C 0.415 3.585 15 O -0.513 6.513 16 N -0.381 5.381 17 C 0.046 3.954 18 C 0.052 3.948 19 C -0.174 4.174 20 C -0.175 4.175 21 C -0.567 4.567 22 H 0.061 0.939 23 C -0.170 4.170 24 N -0.537 5.537 25 Si 0.772 3.228 26 H -0.202 1.202 27 H -0.206 1.206 28 H -0.206 1.206 29 C -0.030 4.030 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.239 0.761 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.052 0.948 48 H 0.083 0.917 49 H 0.070 0.930 50 H 0.092 0.908 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.263 1.011 -20.848 23.717 hybrid contribution 0.884 -0.316 1.313 1.614 sum -10.378 0.695 -19.535 22.131 Atomic orbital electron populations 1.21677 0.91876 1.02716 1.03104 1.22320 0.97397 0.98963 0.92443 0.89107 1.22785 0.92048 1.00748 0.98760 1.20458 0.99878 0.92609 0.78469 0.91179 1.20227 0.97478 0.95547 0.96041 1.20952 1.00451 0.92947 0.99178 1.21375 0.99365 0.96984 0.97536 1.21427 0.97418 1.00012 0.96091 1.21417 0.99897 0.92355 1.00728 1.21214 0.97716 0.98166 0.96990 1.47620 1.11975 1.71163 1.05942 1.15690 0.83052 0.78356 0.81413 1.90860 1.27623 1.56564 1.76282 1.45225 1.17076 1.72305 1.03511 1.21100 0.87289 0.97281 0.89760 1.18352 0.94351 0.93623 0.88451 1.21629 0.96761 0.97087 1.01927 1.21634 0.97537 0.96364 1.01926 1.21274 0.97929 1.45792 0.91709 0.93922 1.25437 0.97646 0.94891 0.99030 1.69908 1.23782 1.47778 1.12226 0.85702 0.80165 0.77878 0.79036 1.20167 1.20567 1.20612 1.22656 0.82258 0.98925 0.99136 0.91706 0.90738 0.92134 0.89703 0.87634 0.87299 0.85179 0.84112 0.83896 0.85007 0.76088 0.94896 0.95109 0.91700 0.94833 0.96530 0.96398 0.94792 0.91687 0.92971 0.90773 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.29 71.98 0.67 -0.66 16 2 C -0.09 -1.27 3.64 -9.40 -0.03 -1.30 16 3 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -1.56 5.92 31.78 0.19 -1.37 16 5 C 0.19 4.52 3.06 44.59 0.14 4.66 16 6 H 0.07 1.79 8.03 -2.39 -0.02 1.77 16 7 C -0.09 -2.43 4.08 -19.86 -0.08 -2.51 16 8 C -0.12 -3.20 9.14 22.27 0.20 -3.00 16 9 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 10 C -0.13 -2.94 10.05 22.27 0.22 -2.71 16 11 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 12 C -0.12 -2.98 9.68 22.27 0.22 -2.76 16 13 N -0.63 -17.60 2.31 -810.07 -1.87 -19.47 16 14 C 0.71 27.13 8.12 179.05 1.45 28.59 16 15 O -0.63 -29.57 16.17 -3.97 -0.06 -29.64 16 16 N -0.73 -27.44 4.92 -478.53 -2.35 -29.79 16 17 C 0.17 7.74 4.50 86.38 0.39 8.13 16 18 C 0.05 2.52 0.50 -52.93 -0.03 2.50 16 19 C -0.12 -5.30 8.08 71.98 0.58 -4.71 16 20 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 21 C -0.53 -28.62 8.01 25.60 0.21 -28.42 16 22 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 23 C 0.03 1.59 5.15 84.66 0.44 2.02 16 24 N -0.90 -48.10 9.35 21.45 0.20 -47.90 16 25 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 C 0.09 1.84 6.05 86.86 0.53 2.36 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.59 8.11 -2.38 -0.02 0.57 16 33 H 0.08 1.22 7.69 -2.39 -0.02 1.20 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 3.00 7.68 -2.91 -0.02 2.97 16 36 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.13 2.71 8.05 -2.91 -0.02 2.68 16 40 H 0.40 13.37 4.64 -92.71 -0.43 12.94 16 41 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 44 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 45 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 47 H 0.03 1.29 6.86 -2.39 -0.02 1.28 16 48 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 49 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 50 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 51 H 0.08 1.50 7.29 -2.39 -0.02 1.48 16 Total: -1.00 -67.02 397.80 4.52 -62.50 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.47 Total: 28.74 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 6.11 Total: -9.60 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -4.03 Total: -97.16 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.06 Total: -29.64 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -67.02 4.52 -62.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459242597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.412 kcal (2) G-P(sol) polarization free energy of solvation -67.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds