Wall clock time and date at job start Sat Apr 11 2020 02:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.46987 * 2 1 4 4 C 1.50693 * 109.47196 * 120.00477 * 2 1 3 5 5 C 1.38358 * 119.85958 * 120.00105 * 4 2 1 6 6 C 1.37949 * 120.14880 * 180.02562 * 5 4 2 7 7 C 1.39574 * 119.85473 * 359.97232 * 6 5 4 8 8 C 1.47842 * 120.14830 * 179.97438 * 7 6 5 9 9 O 1.21558 * 119.99814 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00687 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00467 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.45718 * 35.02390 * 11 10 8 13 13 C 1.53039 * 109.45718 * 275.06588 * 11 10 8 14 14 C 1.53196 * 109.31250 * 301.34572 * 13 11 10 15 15 N 1.46927 * 108.77480 * 305.36405 * 14 13 11 16 16 C 1.36939 * 120.62971 * 233.58873 * 15 14 13 17 17 H 1.07996 * 120.00293 * 27.70073 * 16 15 14 18 18 C 1.38811 * 119.99461 * 207.69673 * 16 15 14 19 19 N 1.31616 * 120.00649 * 17.36012 * 18 16 15 20 20 Si 1.86806 * 119.99684 * 197.35791 * 18 16 15 21 21 H 1.48499 * 109.47513 * 89.99940 * 20 18 16 22 22 H 1.48495 * 109.47130 * 210.00188 * 20 18 16 23 23 H 1.48507 * 109.46900 * 329.99980 * 20 18 16 24 24 C 1.46924 * 118.73840 * 53.60930 * 15 14 13 25 25 C 1.53041 * 109.46110 * 155.00048 * 11 10 8 26 26 H 1.08994 * 109.49775 * 178.60991 * 25 11 10 27 27 C 1.53002 * 109.49263 * 298.67075 * 25 11 10 28 28 C 1.39576 * 119.70898 * 0.25852 * 7 6 5 29 29 C 1.37959 * 119.85514 * 359.51083 * 28 7 6 30 30 H 1.08995 * 109.47539 * 59.99904 * 1 2 3 31 31 H 1.09003 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46955 * 299.99446 * 1 2 3 33 33 H 1.09006 * 109.46660 * 240.00024 * 2 1 3 34 34 H 1.08998 * 109.47260 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47401 * 300.00205 * 3 2 1 36 36 H 1.09003 * 109.47533 * 59.99965 * 3 2 1 37 37 H 1.08007 * 119.92159 * 0.02562 * 5 4 2 38 38 H 1.08002 * 120.07660 * 180.02562 * 6 5 4 39 39 H 0.97006 * 119.99563 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.49956 * 61.29233 * 13 11 10 41 41 H 1.09000 * 109.49804 * 181.39610 * 13 11 10 42 42 H 1.09001 * 109.58698 * 185.57953 * 14 13 11 43 43 H 1.08993 * 109.70568 * 65.22171 * 14 13 11 44 44 H 0.96998 * 120.00399 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.58953 * 186.60522 * 24 15 14 46 46 H 1.09004 * 109.58355 * 66.17566 * 24 15 14 47 47 H 1.08999 * 109.47797 * 60.00167 * 27 25 11 48 48 H 1.09006 * 109.46919 * 180.02562 * 27 25 11 49 49 H 1.09002 * 109.47155 * 299.99560 * 27 25 11 50 50 H 1.08001 * 120.06954 * 179.74718 * 28 7 6 51 51 H 1.07996 * 119.92863 * 180.23218 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8277 -1.8351 1.0999 6 6 3.2904 -2.4904 2.2222 7 6 2.9550 -2.0163 3.4914 8 6 3.4469 -2.7139 4.6985 9 8 4.1446 -3.7030 4.5869 10 7 3.1209 -2.2539 5.9226 11 6 3.6088 -2.9449 7.1188 12 1 4.6082 -3.3365 6.9296 13 6 2.6650 -4.1000 7.4608 14 6 1.2541 -3.5500 7.6922 15 7 1.3183 -2.4995 8.7174 16 6 0.5152 -2.5558 9.8252 17 1 0.1757 -3.5107 10.1981 18 6 0.1378 -1.3852 10.4688 19 7 0.2493 -0.2287 9.8505 20 14 -0.5286 -1.4515 12.2127 21 1 0.5939 -1.3261 13.1768 22 1 -1.4858 -0.3352 12.4196 23 1 -1.2238 -2.7460 12.4281 24 6 2.2602 -1.3874 8.5313 25 6 3.6598 -1.9617 8.2905 26 1 3.9992 -2.4810 9.1866 27 6 4.6292 -0.8247 7.9611 28 6 2.1484 -0.8840 3.6160 29 6 1.6962 -0.2352 2.4856 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.0868 -2.2007 0.1172 38 1 3.9114 -3.3680 2.1190 39 1 2.5638 -1.4647 6.0117 40 1 2.6471 -4.8118 6.6354 41 1 3.0137 -4.5992 8.3648 42 1 0.6000 -4.3530 8.0323 43 1 0.8660 -3.1312 6.7638 44 1 -0.0141 0.5892 10.3005 45 1 2.2701 -0.7634 9.4249 46 1 1.9565 -0.7916 7.6704 47 1 4.2890 -0.3049 7.0655 48 1 4.6656 -0.1249 8.7960 49 1 5.6243 -1.2345 7.7874 50 1 1.8820 -0.5145 4.5952 51 1 1.0751 0.6432 2.5806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944305607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:21 Heat of formation + Delta-G solvation = -10.821327 kcal Electronic energy + Delta-G solvation = -29015.125403 eV Core-core repulsion = 25299.917478 eV Total energy + Delta-G solvation = -3715.207925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.33292 -39.14559 -37.52718 -35.39134 -34.24285 -32.37527 -31.84831 -30.96353 -30.24638 -29.21936 -27.40211 -25.96311 -25.36753 -24.16227 -22.78461 -22.16662 -21.13679 -20.81652 -19.90540 -18.58011 -17.91610 -16.76789 -16.26676 -15.38435 -15.11921 -14.97815 -14.79267 -14.67247 -14.06592 -13.95086 -13.87267 -13.71053 -13.60666 -13.36106 -13.21611 -13.04502 -12.82670 -12.61215 -12.54377 -12.17503 -12.01470 -11.50407 -11.46295 -11.38389 -11.22253 -11.05699 -11.03886 -10.93619 -10.82498 -10.73034 -10.37683 -10.15086 -9.96678 -9.80829 -9.61003 -9.43404 -9.05063 -8.85674 -8.58226 -8.46093 -6.71331 -5.83443 -3.25016 0.84645 1.31977 3.00811 3.35626 3.43080 3.43929 3.50601 3.90543 4.38641 4.46621 4.52854 4.83327 4.89645 4.92141 4.99167 5.16775 5.26526 5.29242 5.30088 5.36428 5.40071 5.43106 5.57082 5.57310 5.60508 5.65469 5.68625 5.80967 5.86537 5.92991 5.95239 5.97375 6.07794 6.15575 6.19773 6.27997 6.31451 6.36914 6.45899 6.46692 6.55202 6.56131 6.65463 6.78709 6.81751 6.93176 7.02790 7.26206 7.55655 7.76377 7.87925 8.40514 8.51273 9.16986 9.80181 10.36643 11.24960 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003092 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.664437 B = 9054.544708 C =10086.249356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.145 4.145 4 C -0.057 4.057 5 C -0.130 4.130 6 C -0.060 4.060 7 C -0.133 4.133 8 C 0.555 3.445 9 O -0.550 6.550 10 N -0.705 5.705 11 C 0.160 3.840 12 H 0.073 0.927 13 C -0.145 4.145 14 C 0.148 3.852 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.179 3.821 25 C -0.128 4.128 26 H 0.079 0.921 27 C -0.139 4.139 28 C -0.080 4.080 29 C -0.122 4.122 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.402 0.598 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.253 0.747 45 H 0.091 0.909 46 H 0.014 0.986 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.044 0.956 50 H 0.129 0.871 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 2.269 -17.793 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.202 4.202 4 C -0.058 4.058 5 C -0.148 4.148 6 C -0.079 4.079 7 C -0.136 4.136 8 C 0.342 3.658 9 O -0.429 6.429 10 N -0.356 5.356 11 C 0.056 3.944 12 H 0.092 0.908 13 C -0.186 4.186 14 C 0.021 3.979 15 N -0.314 5.314 16 C -0.380 4.380 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.053 3.947 25 C -0.149 4.149 26 H 0.097 0.903 27 C -0.197 4.197 28 C -0.099 4.099 29 C -0.140 4.140 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.240 0.760 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.063 0.937 45 H 0.109 0.891 46 H 0.031 0.969 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.063 0.937 50 H 0.146 0.854 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.361 1.725 -17.754 18.626 hybrid contribution -0.670 0.414 1.015 1.285 sum 4.691 2.139 -16.739 17.515 Atomic orbital electron populations 1.21873 0.94062 1.02234 1.02129 1.20182 0.96182 0.96149 0.95240 1.21867 1.01284 0.94964 1.02118 1.20062 0.95997 0.94930 0.94766 1.21003 0.99203 0.96019 0.98539 1.21231 0.97039 0.98757 0.90824 1.20047 1.01829 0.97714 0.94031 1.18254 0.80204 0.83969 0.83401 1.90723 1.38915 1.26335 1.86969 1.46110 1.52563 1.31760 1.05215 1.20909 0.97106 0.92737 0.83647 0.90845 1.22380 0.98477 0.97031 1.00670 1.20858 0.93103 0.92012 0.91886 1.44064 1.42188 1.24074 1.21102 1.19205 1.24329 0.92182 1.02325 0.91649 1.25008 0.99375 0.95956 0.99237 1.70010 1.51561 0.97577 1.35642 0.86293 0.78343 0.77161 0.84999 1.21457 1.21798 1.20468 1.20782 0.83551 0.89608 1.00775 1.22142 0.99893 0.96109 0.96763 0.90307 1.21723 0.98213 0.98538 1.01215 1.21405 0.95199 0.93990 0.99279 1.20918 1.00950 1.00548 0.91552 0.92335 0.92404 0.92167 0.90393 0.92473 0.92343 0.92196 0.85689 0.84826 0.76024 0.92529 0.91395 0.92932 0.96548 0.93657 0.89058 0.96857 0.93239 0.92580 0.93654 0.85359 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.01 37.16 0.33 -0.74 16 2 C -0.06 -0.46 3.09 -91.78 -0.28 -0.74 16 3 C -0.15 -1.03 9.00 37.15 0.33 -0.69 16 4 C -0.06 -0.58 4.79 -104.53 -0.50 -1.08 16 5 C -0.13 -1.36 9.65 -39.64 -0.38 -1.75 16 6 C -0.06 -0.76 9.60 -39.19 -0.38 -1.14 16 7 C -0.13 -1.90 5.87 -104.97 -0.62 -2.52 16 8 C 0.55 9.31 7.74 -12.33 -0.10 9.21 16 9 O -0.55 -10.68 16.01 5.31 0.09 -10.59 16 10 N -0.70 -11.63 3.55 -54.71 -0.19 -11.82 16 11 C 0.16 2.80 2.21 -67.89 -0.15 2.65 16 12 H 0.07 1.31 7.58 -51.93 -0.39 0.91 16 13 C -0.15 -2.69 5.77 -26.61 -0.15 -2.84 16 14 C 0.15 3.10 6.25 -3.71 -0.02 3.08 16 15 N -0.59 -14.21 2.99 -172.32 -0.52 -14.72 16 16 C -0.25 -6.70 9.59 -15.06 -0.14 -6.84 16 17 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -25.11 11.19 55.49 0.62 -24.49 16 20 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 C 0.18 3.95 4.30 -3.71 -0.02 3.93 16 25 C -0.13 -2.32 2.67 -90.50 -0.24 -2.56 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 C -0.14 -2.16 9.05 37.16 0.34 -1.82 16 28 C -0.08 -1.02 9.54 -39.18 -0.37 -1.39 16 29 C -0.12 -1.33 8.69 -39.64 -0.34 -1.68 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.46 7.37 -51.93 -0.38 0.08 16 33 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16 37 H 0.13 1.02 7.94 -52.48 -0.42 0.60 16 38 H 0.13 1.70 7.65 -52.49 -0.40 1.30 16 39 H 0.40 6.51 4.76 -40.82 -0.19 6.32 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 44 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 46 H 0.01 0.30 6.64 -51.93 -0.34 -0.04 16 47 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.13 1.60 6.41 -52.49 -0.34 1.26 16 51 H 0.13 1.18 7.08 -52.49 -0.37 0.81 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -29.75 395.78 -10.36 -40.11 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.51 Total: 6.23 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.78 Total: -6.93 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.09 Total: -51.04 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.75 -10.36 -40.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944305607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.290 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds