Wall clock time and date at job start Sat Apr 11 2020 02:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.46987 * 2 1 4 4 C 1.50693 * 109.47196 * 120.00477 * 2 1 3 5 5 C 1.38358 * 119.85958 * 120.00105 * 4 2 1 6 6 C 1.37949 * 120.14880 * 180.02562 * 5 4 2 7 7 C 1.39574 * 119.85473 * 359.97232 * 6 5 4 8 8 C 1.47842 * 120.14830 * 179.97438 * 7 6 5 9 9 O 1.21558 * 119.99814 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00687 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00467 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.45718 * 35.02390 * 11 10 8 13 13 C 1.53039 * 109.45718 * 275.06588 * 11 10 8 14 14 C 1.53196 * 109.31250 * 301.34572 * 13 11 10 15 15 N 1.46927 * 108.77480 * 305.36405 * 14 13 11 16 16 C 1.36939 * 120.62971 * 233.58873 * 15 14 13 17 17 H 1.07996 * 120.00293 * 27.70073 * 16 15 14 18 18 C 1.38811 * 119.99461 * 207.69673 * 16 15 14 19 19 N 1.31616 * 120.00649 * 17.36012 * 18 16 15 20 20 Si 1.86806 * 119.99684 * 197.35791 * 18 16 15 21 21 H 1.48499 * 109.47513 * 89.99940 * 20 18 16 22 22 H 1.48495 * 109.47130 * 210.00188 * 20 18 16 23 23 H 1.48507 * 109.46900 * 329.99980 * 20 18 16 24 24 C 1.46924 * 118.73840 * 53.60930 * 15 14 13 25 25 C 1.53041 * 109.46110 * 155.00048 * 11 10 8 26 26 H 1.08994 * 109.49775 * 178.60991 * 25 11 10 27 27 C 1.53002 * 109.49263 * 298.67075 * 25 11 10 28 28 C 1.39576 * 119.70898 * 0.25852 * 7 6 5 29 29 C 1.37959 * 119.85514 * 359.51083 * 28 7 6 30 30 H 1.08995 * 109.47539 * 59.99904 * 1 2 3 31 31 H 1.09003 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46955 * 299.99446 * 1 2 3 33 33 H 1.09006 * 109.46660 * 240.00024 * 2 1 3 34 34 H 1.08998 * 109.47260 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47401 * 300.00205 * 3 2 1 36 36 H 1.09003 * 109.47533 * 59.99965 * 3 2 1 37 37 H 1.08007 * 119.92159 * 0.02562 * 5 4 2 38 38 H 1.08002 * 120.07660 * 180.02562 * 6 5 4 39 39 H 0.97006 * 119.99563 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.49956 * 61.29233 * 13 11 10 41 41 H 1.09000 * 109.49804 * 181.39610 * 13 11 10 42 42 H 1.09001 * 109.58698 * 185.57953 * 14 13 11 43 43 H 1.08993 * 109.70568 * 65.22171 * 14 13 11 44 44 H 0.96998 * 120.00399 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.58953 * 186.60522 * 24 15 14 46 46 H 1.09004 * 109.58355 * 66.17566 * 24 15 14 47 47 H 1.08999 * 109.47797 * 60.00167 * 27 25 11 48 48 H 1.09006 * 109.46919 * 180.02562 * 27 25 11 49 49 H 1.09002 * 109.47155 * 299.99560 * 27 25 11 50 50 H 1.08001 * 120.06954 * 179.74718 * 28 7 6 51 51 H 1.07996 * 119.92863 * 180.23218 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8277 -1.8351 1.0999 6 6 3.2904 -2.4904 2.2222 7 6 2.9550 -2.0163 3.4914 8 6 3.4469 -2.7139 4.6985 9 8 4.1446 -3.7030 4.5869 10 7 3.1209 -2.2539 5.9226 11 6 3.6088 -2.9449 7.1188 12 1 4.6082 -3.3365 6.9296 13 6 2.6650 -4.1000 7.4608 14 6 1.2541 -3.5500 7.6922 15 7 1.3183 -2.4995 8.7174 16 6 0.5152 -2.5558 9.8252 17 1 0.1757 -3.5107 10.1981 18 6 0.1378 -1.3852 10.4688 19 7 0.2493 -0.2287 9.8505 20 14 -0.5286 -1.4515 12.2127 21 1 0.5939 -1.3261 13.1768 22 1 -1.4858 -0.3352 12.4196 23 1 -1.2238 -2.7460 12.4281 24 6 2.2602 -1.3874 8.5313 25 6 3.6598 -1.9617 8.2905 26 1 3.9992 -2.4810 9.1866 27 6 4.6292 -0.8247 7.9611 28 6 2.1484 -0.8840 3.6160 29 6 1.6962 -0.2352 2.4856 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.0868 -2.2007 0.1172 38 1 3.9114 -3.3680 2.1190 39 1 2.5638 -1.4647 6.0117 40 1 2.6471 -4.8118 6.6354 41 1 3.0137 -4.5992 8.3648 42 1 0.6000 -4.3530 8.0323 43 1 0.8660 -3.1312 6.7638 44 1 -0.0141 0.5892 10.3005 45 1 2.2701 -0.7634 9.4249 46 1 1.9565 -0.7916 7.6704 47 1 4.2890 -0.3049 7.0655 48 1 4.6656 -0.1249 8.7960 49 1 5.6243 -1.2345 7.7874 50 1 1.8820 -0.5145 4.5952 51 1 1.0751 0.6432 2.5806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944305607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:20 Heat of formation + Delta-G solvation = -24.671183 kcal Electronic energy + Delta-G solvation = -29015.725978 eV Core-core repulsion = 25299.917478 eV Total energy + Delta-G solvation = -3715.808500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55716 -40.26621 -38.97906 -36.18245 -35.96222 -33.84353 -33.54875 -32.04882 -31.49952 -30.54399 -27.94582 -27.54622 -27.10152 -25.26296 -23.84686 -23.65595 -22.65389 -22.04134 -20.79504 -20.12404 -19.16863 -18.61176 -17.29090 -16.82616 -16.50034 -16.25668 -16.00500 -15.87141 -15.58910 -15.36816 -15.02110 -14.84312 -14.69872 -14.57227 -14.39497 -14.31464 -14.17860 -13.65472 -13.58544 -13.29222 -13.08497 -12.95173 -12.86529 -12.79088 -12.57043 -12.49002 -12.27581 -12.17561 -11.99719 -11.81305 -11.77076 -11.72286 -11.52162 -11.48341 -11.15659 -10.94843 -10.54606 -10.07885 -9.96125 -9.65740 -8.67318 -7.87248 -5.31406 -0.14874 0.40822 1.47397 1.49498 1.57193 1.85810 2.20951 2.51494 2.87413 3.27187 3.58403 3.66047 3.74464 3.80612 3.90035 3.99051 4.03665 4.16558 4.17919 4.32414 4.33874 4.41374 4.51835 4.53234 4.56246 4.65116 4.72299 4.81222 4.84990 4.89283 4.94215 4.96194 5.01162 5.03369 5.06882 5.07354 5.12799 5.16196 5.27304 5.31849 5.32901 5.38525 5.42167 5.42557 5.49961 5.59074 5.65511 5.66482 5.74940 5.93454 6.39539 6.54329 7.15775 7.18800 7.85084 8.37091 9.18434 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003092 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.664437 B = 9054.544708 C =10086.249356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.049 4.049 5 C -0.126 4.126 6 C -0.068 4.068 7 C -0.156 4.156 8 C 0.555 3.445 9 O -0.581 6.581 10 N -0.702 5.702 11 C 0.166 3.834 12 H 0.078 0.922 13 C -0.135 4.135 14 C 0.150 3.850 15 N -0.607 5.607 16 C -0.264 4.264 17 H 0.062 0.938 18 C -0.043 4.043 19 N -0.927 5.927 20 Si 0.962 3.038 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.273 1.273 24 C 0.189 3.811 25 C -0.116 4.116 26 H 0.073 0.927 27 C -0.132 4.132 28 C -0.087 4.087 29 C -0.124 4.124 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.153 0.847 38 H 0.130 0.870 39 H 0.404 0.596 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.012 0.988 44 H 0.251 0.749 45 H 0.059 0.941 46 H 0.006 0.994 47 H 0.053 0.947 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.124 0.876 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.179 2.736 -19.462 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.049 4.049 5 C -0.143 4.143 6 C -0.087 4.087 7 C -0.159 4.159 8 C 0.344 3.656 9 O -0.463 6.463 10 N -0.353 5.353 11 C 0.061 3.939 12 H 0.096 0.904 13 C -0.175 4.175 14 C 0.024 3.976 15 N -0.330 5.330 16 C -0.394 4.394 17 H 0.079 0.921 18 C -0.239 4.239 19 N -0.573 5.573 20 Si 0.791 3.209 21 H -0.213 1.213 22 H -0.221 1.221 23 H -0.198 1.198 24 C 0.063 3.937 25 C -0.137 4.137 26 H 0.092 0.908 27 C -0.190 4.190 28 C -0.106 4.106 29 C -0.142 4.142 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.171 0.829 38 H 0.148 0.852 39 H 0.241 0.759 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.030 0.970 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.024 0.976 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.142 0.858 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.591 2.187 -19.433 20.339 hybrid contribution -0.790 0.279 1.431 1.659 sum 4.801 2.466 -18.002 18.794 Atomic orbital electron populations 1.21880 0.93697 1.02034 1.02702 1.20252 0.96376 0.96453 0.94444 1.21868 1.01123 0.94470 1.02719 1.20415 0.94686 0.94416 0.95431 1.21301 0.98388 0.95644 0.99003 1.21326 0.97354 0.98995 0.91026 1.19926 1.03722 0.98812 0.93457 1.18643 0.79449 0.83543 0.83950 1.90694 1.40421 1.27743 1.87395 1.46050 1.52521 1.31678 1.05057 1.20785 0.97025 0.92247 0.83807 0.90418 1.22247 0.96966 0.97360 1.00881 1.20879 0.94654 0.91162 0.90859 1.44282 1.42478 1.24968 1.21266 1.19451 1.24527 0.92134 1.03314 0.92074 1.25667 1.00161 0.95713 1.02357 1.70137 1.52579 0.97852 1.36725 0.85345 0.77583 0.77027 0.80927 1.21258 1.22094 1.19835 1.20599 0.85373 0.88870 0.98810 1.21951 0.97926 0.96898 0.96896 0.90832 1.21662 0.98329 0.97581 1.01434 1.21424 0.95369 0.93886 0.99882 1.21141 1.00805 1.00846 0.91418 0.90779 0.92992 0.92666 0.88873 0.92737 0.90853 0.92575 0.82910 0.85243 0.75863 0.92176 0.91162 0.93396 0.96965 0.94029 0.92282 0.97645 0.92812 0.92441 0.91809 0.85782 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.01 71.98 0.65 -1.14 16 2 C -0.06 -0.72 3.09 -11.54 -0.04 -0.75 16 3 C -0.14 -1.65 9.00 71.98 0.65 -1.00 16 4 C -0.05 -0.88 4.79 -19.81 -0.09 -0.98 16 5 C -0.13 -2.38 9.65 22.23 0.21 -2.16 16 6 C -0.07 -1.69 9.60 22.52 0.22 -1.47 16 7 C -0.16 -4.43 5.87 -20.09 -0.12 -4.55 16 8 C 0.56 18.70 7.74 86.79 0.67 19.37 16 9 O -0.58 -22.64 16.01 -3.90 -0.06 -22.70 16 10 N -0.70 -23.20 3.55 -445.28 -1.58 -24.78 16 11 C 0.17 5.76 2.21 45.02 0.10 5.86 16 12 H 0.08 2.70 7.58 -2.39 -0.02 2.68 16 13 C -0.13 -4.95 5.77 30.67 0.18 -4.77 16 14 C 0.15 6.37 6.25 86.36 0.54 6.91 16 15 N -0.61 -29.60 2.99 -699.10 -2.09 -31.69 16 16 C -0.26 -14.29 9.59 84.03 0.81 -13.48 16 17 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 18 C -0.04 -2.33 4.91 84.86 0.42 -1.92 16 19 N -0.93 -52.43 11.19 21.65 0.24 -52.18 16 20 Si 0.96 44.11 29.59 68.60 2.03 46.14 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 C 0.19 8.49 4.30 86.36 0.37 8.86 16 25 C -0.12 -4.17 2.67 -10.72 -0.03 -4.20 16 26 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 27 C -0.13 -3.98 9.05 71.98 0.65 -3.32 16 28 C -0.09 -2.18 9.54 22.53 0.21 -1.97 16 29 C -0.12 -2.55 8.69 22.23 0.19 -2.36 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.73 7.37 -2.39 -0.02 0.71 16 33 H 0.09 0.94 7.87 -2.38 -0.02 0.92 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.06 0.68 7.38 -2.39 -0.02 0.67 16 37 H 0.15 2.00 7.94 -2.91 -0.02 1.98 16 38 H 0.13 3.26 7.65 -2.91 -0.02 3.24 16 39 H 0.40 13.22 4.76 -92.70 -0.44 12.78 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 43 H 0.01 0.54 7.74 -2.39 -0.02 0.52 16 44 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 45 H 0.06 3.05 6.04 -2.39 -0.01 3.04 16 46 H 0.01 0.26 6.64 -2.38 -0.02 0.24 16 47 H 0.05 1.56 7.54 -2.39 -0.02 1.55 16 48 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 49 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.12 3.14 6.41 -2.91 -0.02 3.12 16 51 H 0.14 2.43 7.08 -2.91 -0.02 2.41 16 Total: -1.00 -63.88 395.78 4.59 -59.28 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.47 Total: 29.01 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 5.59 Total: -3.07 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -3.43 Total: -108.66 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.06 Total: -22.70 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -63.88 4.59 -59.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944305607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.611 kcal (2) G-P(sol) polarization free energy of solvation -63.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds