Wall clock time and date at job start Sat Apr 11 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47033 * 2 1 4 4 C 1.50706 * 109.47046 * 119.99859 * 2 1 3 5 5 C 1.38359 * 119.85307 * 120.00112 * 4 2 1 6 6 C 1.37960 * 120.14183 * 179.97438 * 5 4 2 7 7 C 1.39570 * 119.85301 * 0.02562 * 6 5 4 8 8 C 1.47847 * 120.14123 * 179.97438 * 7 6 5 9 9 O 1.21556 * 120.00208 * 230.79663 * 8 7 6 10 10 N 1.34777 * 119.99901 * 50.80322 * 8 7 6 11 11 C 1.46926 * 120.63370 * 356.22485 * 10 8 7 12 12 C 1.53188 * 108.77787 * 126.37023 * 11 10 8 13 13 C 1.53040 * 109.31024 * 54.63876 * 12 11 10 14 14 H 1.08999 * 109.44941 * 58.64934 * 13 12 11 15 15 N 1.46503 * 109.46197 * 178.61409 * 13 12 11 16 16 C 1.36928 * 120.00276 * 275.07336 * 15 13 12 17 17 H 1.08004 * 119.99704 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00306 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00069 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47161 * 299.99726 * 20 18 16 23 23 H 1.48505 * 109.47009 * 59.99594 * 20 18 16 24 24 C 1.53046 * 109.54086 * 298.63322 * 13 12 11 25 25 H 1.08995 * 109.49499 * 301.41662 * 24 13 12 26 26 C 1.52993 * 109.49952 * 181.34729 * 24 13 12 27 27 C 1.46929 * 120.63066 * 176.21037 * 10 8 7 28 28 C 1.39573 * 119.71679 * 0.25418 * 7 6 5 29 29 C 1.37959 * 119.84906 * 359.46703 * 28 7 6 30 30 H 1.09003 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47416 * 299.99656 * 1 2 3 32 32 H 1.09000 * 109.47400 * 60.00344 * 1 2 3 33 33 H 1.08999 * 109.47028 * 239.99676 * 2 1 3 34 34 H 1.09002 * 109.46978 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47170 * 299.99762 * 3 2 1 36 36 H 1.08999 * 109.47478 * 59.99951 * 3 2 1 37 37 H 1.07999 * 119.92745 * 0.02562 * 5 4 2 38 38 H 1.07998 * 120.07018 * 180.02562 * 6 5 4 39 39 H 1.09000 * 109.58967 * 246.16471 * 11 10 8 40 40 H 1.09007 * 109.58249 * 6.44405 * 11 10 8 41 41 H 1.08998 * 109.49647 * 294.69021 * 12 11 10 42 42 H 1.08994 * 109.50207 * 174.58980 * 12 11 10 43 43 H 0.97005 * 119.99505 * 95.06531 * 15 13 12 44 44 H 0.97007 * 120.00024 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.47150 * 60.00510 * 26 24 13 46 46 H 1.09002 * 109.47103 * 180.02562 * 26 24 13 47 47 H 1.08993 * 109.47433 * 300.00443 * 26 24 13 48 48 H 1.08995 * 109.59150 * 113.83676 * 27 10 8 49 49 H 1.09003 * 109.70234 * 353.48138 * 27 10 8 50 50 H 1.07999 * 120.07576 * 179.72580 * 28 7 6 51 51 H 1.07997 * 119.93069 * 180.27226 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8276 -1.8351 1.1001 6 6 3.2911 -2.4897 2.2225 7 6 2.9557 -2.0154 3.4916 8 6 3.4486 -2.7124 4.6988 9 8 2.6714 -3.0263 5.5792 10 7 4.7595 -2.9995 4.8231 11 6 5.6980 -2.7010 3.7328 12 6 6.8490 -1.8576 4.2900 13 6 7.4791 -2.5847 5.4802 14 1 7.8389 -3.5622 5.1592 15 7 8.6016 -1.7965 5.9951 16 6 9.8421 -1.9205 5.4288 17 1 9.9931 -2.5998 4.6028 18 6 10.9058 -1.1742 5.9170 19 7 10.7218 -0.3468 6.9240 20 14 12.5982 -1.3440 5.1448 21 1 13.5530 -0.4457 5.8426 22 1 13.0599 -2.7498 5.2685 23 1 12.5270 -0.9708 3.7092 24 6 6.4332 -2.7632 6.5831 25 1 6.0549 -1.7872 6.8871 26 6 7.0728 -3.4601 7.7856 27 6 5.2774 -3.6168 6.0517 28 6 2.1483 -0.8838 3.6162 29 6 1.6961 -0.2351 2.4857 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.0867 -2.2007 0.1175 38 1 3.9122 -3.3672 2.1194 39 1 6.0914 -3.6317 3.3241 40 1 5.1824 -2.1466 2.9485 41 1 6.4667 -0.8902 4.6156 42 1 7.6006 -1.7100 3.5146 43 1 8.4659 -1.1867 6.7372 44 1 11.4651 0.1751 7.2649 45 1 7.8966 -2.8533 8.1613 46 1 6.3274 -3.5874 8.5706 47 1 7.4500 -4.4364 7.4814 48 1 5.6365 -4.6223 5.8323 49 1 4.4860 -3.6667 6.7997 50 1 1.8816 -0.5144 4.5954 51 1 1.0749 0.6432 2.5806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036282184.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:55 Heat of formation + Delta-G solvation = -29.518371 kcal Electronic energy + Delta-G solvation = -28609.079676 eV Core-core repulsion = 24893.060986 eV Total energy + Delta-G solvation = -3716.018690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71387 -40.15403 -38.94962 -36.39230 -36.08239 -34.44740 -33.08335 -32.01131 -31.26924 -30.85974 -27.94219 -27.68860 -26.81413 -25.22251 -24.02556 -23.71246 -23.05601 -21.55830 -20.97874 -20.45970 -19.05941 -18.43860 -17.47928 -17.02119 -16.72683 -16.46819 -15.78488 -15.75039 -15.59974 -15.50527 -15.01154 -14.88745 -14.71776 -14.47649 -14.40757 -14.17936 -13.93462 -13.77628 -13.55768 -13.34797 -13.14666 -13.00689 -12.83695 -12.79253 -12.70389 -12.49480 -12.26633 -12.19782 -12.07603 -11.97820 -11.86608 -11.79062 -11.66811 -11.51693 -11.17549 -11.00980 -10.81596 -9.92733 -9.78450 -9.59634 -8.95969 -7.90344 -5.18171 -0.00542 0.40369 1.48965 1.51208 1.55549 1.57091 1.95355 2.58504 2.74545 3.38079 3.43409 3.73233 3.77299 3.78739 3.84918 3.97926 4.01991 4.08036 4.19264 4.28058 4.34724 4.35726 4.42493 4.47202 4.52541 4.53766 4.65735 4.75829 4.77569 4.80660 4.84842 4.88922 4.95815 4.96134 5.00803 5.03391 5.07084 5.14781 5.18108 5.28367 5.34198 5.36426 5.39349 5.42551 5.42765 5.49369 5.55731 5.61299 5.67851 5.94173 6.29935 6.32045 7.01012 7.37181 8.12980 8.36571 9.33110 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.002876 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.681622 B = 9733.289553 C =11150.396493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.057 4.057 5 C -0.121 4.121 6 C -0.088 4.088 7 C -0.147 4.147 8 C 0.557 3.443 9 O -0.582 6.582 10 N -0.598 5.598 11 C 0.107 3.893 12 C -0.141 4.141 13 C 0.180 3.820 14 H 0.051 0.949 15 N -0.732 5.732 16 C -0.230 4.230 17 H 0.079 0.921 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.969 3.031 21 H -0.301 1.301 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.100 4.100 25 H 0.050 0.950 26 C -0.129 4.129 27 C 0.126 3.874 28 C -0.085 4.085 29 C -0.120 4.120 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.370 0.630 44 H 0.248 0.752 45 H 0.041 0.959 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.118 0.882 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.223 -2.654 -15.913 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.203 4.203 4 C -0.057 4.057 5 C -0.139 4.139 6 C -0.106 4.106 7 C -0.150 4.150 8 C 0.347 3.653 9 O -0.464 6.464 10 N -0.328 5.328 11 C -0.015 4.015 12 C -0.182 4.182 13 C 0.072 3.928 14 H 0.069 0.931 15 N -0.370 5.370 16 C -0.362 4.362 17 H 0.096 0.904 18 C -0.269 4.269 19 N -0.623 5.623 20 Si 0.798 3.202 21 H -0.228 1.228 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.120 4.120 25 H 0.068 0.932 26 C -0.187 4.187 27 C 0.003 3.997 28 C -0.104 4.104 29 C -0.137 4.137 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.173 0.827 38 H 0.162 0.838 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.201 0.799 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.106 0.894 49 H 0.101 0.899 50 H 0.136 0.864 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.453 -2.901 -15.559 25.862 hybrid contribution 1.270 0.553 0.677 1.541 sum -19.184 -2.348 -14.882 24.393 Atomic orbital electron populations 1.21864 0.93551 1.02099 1.02625 1.20237 0.96506 0.96191 0.94580 1.21877 1.01029 0.94814 1.02610 1.20381 0.95337 0.94789 0.95241 1.21332 0.97814 0.95462 0.99273 1.21464 0.98382 1.00110 0.90639 1.19804 1.02945 0.99046 0.93219 1.18825 0.81856 0.77971 0.86632 1.90730 1.56185 1.55598 1.43863 1.48149 1.06806 1.60054 1.17823 1.22189 0.89598 1.00844 0.88912 1.22471 0.97160 0.98772 0.99813 1.20423 0.86708 0.93856 0.91854 0.93065 1.42586 1.05325 1.49514 1.39606 1.19563 0.86934 1.18253 1.11479 0.90357 1.25503 1.01668 1.00085 0.99693 1.69820 1.31662 1.31195 1.29631 0.85280 0.80045 0.77122 0.77739 1.22775 1.20468 1.20354 1.21607 0.95145 0.98778 0.96460 0.93176 1.21569 1.00057 1.00348 0.96741 1.21644 0.95585 0.96237 0.86206 1.21185 0.95391 0.94107 0.99714 1.21088 1.00750 1.00609 0.91283 0.92772 0.92581 0.90989 0.88949 0.93055 0.90978 0.92605 0.82742 0.83822 0.88934 0.87702 0.94154 0.91304 0.79859 0.94296 0.94000 0.91748 0.92086 0.89428 0.89863 0.86395 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.00 71.98 0.65 -0.75 16 2 C -0.06 -0.62 3.09 -11.54 -0.04 -0.66 16 3 C -0.15 -1.60 9.00 71.98 0.65 -0.95 16 4 C -0.06 -0.89 4.79 -19.80 -0.09 -0.99 16 5 C -0.12 -1.87 9.65 22.23 0.21 -1.65 16 6 C -0.09 -1.67 7.37 22.53 0.17 -1.51 16 7 C -0.15 -3.70 5.00 -20.09 -0.10 -3.80 16 8 C 0.56 17.07 7.24 86.79 0.63 17.69 16 9 O -0.58 -21.81 16.47 -3.89 -0.06 -21.88 16 10 N -0.60 -16.83 2.97 -822.28 -2.44 -19.28 16 11 C 0.11 2.65 5.38 86.36 0.47 3.11 16 12 C -0.14 -4.67 5.66 30.67 0.17 -4.49 16 13 C 0.18 6.73 2.19 45.02 0.10 6.83 16 14 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 15 N -0.73 -35.58 4.41 -322.81 -1.42 -37.00 16 16 C -0.23 -12.29 9.93 84.03 0.83 -11.45 16 17 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 19 N -0.97 -59.18 13.06 21.65 0.28 -58.89 16 20 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 C -0.10 -3.33 2.46 -10.71 -0.03 -3.35 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 C -0.13 -4.22 9.03 71.98 0.65 -3.57 16 27 C 0.13 3.62 5.70 86.36 0.49 4.11 16 28 C -0.09 -2.02 9.74 22.53 0.22 -1.80 16 29 C -0.12 -2.18 8.69 22.23 0.19 -1.99 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.57 7.37 -2.39 -0.02 0.55 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.80 7.87 -2.39 -0.02 0.78 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.05 0.64 7.38 -2.39 -0.02 0.62 16 37 H 0.15 1.51 7.94 -2.91 -0.02 1.49 16 38 H 0.14 2.27 7.08 -2.91 -0.02 2.25 16 39 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.11 2.28 4.55 -2.38 -0.01 2.27 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.37 19.91 7.50 -92.70 -0.70 19.21 16 44 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 45 H 0.04 1.64 7.36 -2.39 -0.02 1.62 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.08 2.53 7.03 -2.39 -0.02 2.52 16 50 H 0.12 2.92 8.06 -2.91 -0.02 2.89 16 51 H 0.14 2.05 7.08 -2.91 -0.02 2.03 16 Total: -1.00 -68.64 400.20 4.23 -64.40 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.21 Total: 34.36 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.64 Total: -9.12 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -3.58 Total: -115.17 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.88 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -68.64 4.23 -64.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282184.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.885 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds