Wall clock time and date at job start Sat Apr 11 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46861 * 2 1 4 4 C 1.50694 * 109.46986 * 120.00187 * 2 1 3 5 5 C 1.38358 * 119.85330 * 120.00256 * 4 2 1 6 6 C 1.37955 * 120.14892 * 180.02562 * 5 4 2 7 7 C 1.39583 * 119.84992 * 359.97438 * 6 5 4 8 8 C 1.47850 * 120.14388 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99813 * 318.96114 * 8 7 6 10 10 N 1.34769 * 119.99944 * 138.96427 * 8 7 6 11 11 C 1.46929 * 120.63211 * 354.16735 * 10 8 7 12 12 C 1.53196 * 108.77423 * 233.58321 * 11 10 8 13 13 C 1.53034 * 109.31463 * 305.36362 * 12 11 10 14 14 H 1.08997 * 109.45910 * 181.37944 * 13 12 11 15 15 N 1.46497 * 109.45114 * 301.35352 * 13 12 11 16 16 C 1.36942 * 119.99907 * 275.06075 * 15 13 12 17 17 H 1.08002 * 119.99751 * 359.97438 * 16 15 13 18 18 C 1.38805 * 120.00120 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00059 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00088 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47126 * 90.00010 * 20 18 16 22 22 H 1.48497 * 109.47259 * 210.00343 * 20 18 16 23 23 H 1.48507 * 109.46823 * 330.00191 * 20 18 16 24 24 C 1.53044 * 109.53529 * 61.36674 * 13 12 11 25 25 H 1.08998 * 109.49699 * 58.58653 * 24 13 12 26 26 C 1.53006 * 109.49767 * 178.68254 * 24 13 12 27 27 C 1.46932 * 120.63078 * 174.14214 * 10 8 7 28 28 C 1.39572 * 119.71200 * 0.24736 * 7 6 5 29 29 C 1.37958 * 119.85031 * 359.52062 * 28 7 6 30 30 H 1.09001 * 109.47351 * 60.00024 * 1 2 3 31 31 H 1.09008 * 109.47161 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47539 * 299.99745 * 1 2 3 33 33 H 1.09002 * 109.47061 * 240.00645 * 2 1 3 34 34 H 1.08997 * 109.47037 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47858 * 300.00108 * 3 2 1 36 36 H 1.09001 * 109.47423 * 60.00117 * 3 2 1 37 37 H 1.08002 * 119.92828 * 0.02562 * 5 4 2 38 38 H 1.08001 * 120.08158 * 179.97438 * 6 5 4 39 39 H 1.09003 * 109.58482 * 113.79909 * 11 10 8 40 40 H 1.08997 * 109.58683 * 353.36991 * 11 10 8 41 41 H 1.08998 * 109.49312 * 185.41074 * 12 11 10 42 42 H 1.08994 * 109.51942 * 65.33604 * 12 11 10 43 43 H 0.96996 * 120.00524 * 95.06260 * 15 13 12 44 44 H 0.97002 * 120.00293 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.47194 * 59.99599 * 26 24 13 46 46 H 1.08997 * 109.47409 * 179.97438 * 26 24 13 47 47 H 1.09001 * 109.46729 * 300.00227 * 26 24 13 48 48 H 1.08997 * 109.58134 * 6.62938 * 27 10 8 49 49 H 1.08993 * 109.58530 * 246.20300 * 27 10 8 50 50 H 1.07999 * 120.07861 * 179.72384 * 28 7 6 51 51 H 1.08003 * 119.92946 * 180.22779 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8276 -1.8351 1.0999 6 6 3.2903 -2.4905 2.2222 7 6 2.9549 -2.0163 3.4914 8 6 3.4468 -2.7140 4.6986 9 8 3.4583 -3.9289 4.7360 10 7 3.8822 -2.0030 5.7574 11 6 3.9945 -0.5399 5.6816 12 6 5.4147 -0.1328 6.0869 13 6 5.7351 -0.7172 7.4645 14 1 6.7360 -0.4086 7.7660 15 7 4.7586 -0.2282 8.4410 16 6 4.9496 0.9816 9.0535 17 1 5.8204 1.5750 8.8170 18 6 4.0247 1.4446 9.9791 19 7 4.2081 2.6076 10.5674 20 14 2.5189 0.4178 10.3888 21 1 2.8307 -0.4870 11.5243 22 1 1.3958 1.3140 10.7639 23 1 2.1331 -0.3898 9.2037 24 6 5.6705 -2.2449 7.3999 25 1 6.3792 -2.6078 6.6556 26 6 6.0230 -2.8293 8.7693 27 6 4.2532 -2.6760 7.0097 28 6 2.1484 -0.8840 3.6160 29 6 1.6963 -0.2351 2.4856 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.0867 -2.2007 0.1173 38 1 3.9107 -3.3685 2.1190 39 1 3.2753 -0.0826 6.3611 40 1 3.7971 -0.2106 4.6615 41 1 5.4837 0.9543 6.1278 42 1 6.1260 -0.5151 5.3550 43 1 3.9767 -0.7614 8.6538 44 1 3.5615 2.9314 11.2140 45 1 5.3130 -2.4669 9.5128 46 1 5.9765 -3.9173 8.7230 47 1 7.0304 -2.5198 9.0479 48 1 4.2265 -3.7561 6.8657 49 1 3.5552 -2.3929 7.7973 50 1 1.8816 -0.5146 4.5952 51 1 1.0752 0.6433 2.5806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036282186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:59 Heat of formation + Delta-G solvation = -6.579203 kcal Electronic energy + Delta-G solvation = -29210.472473 eV Core-core repulsion = 25495.448500 eV Total energy + Delta-G solvation = -3715.023973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64157 -39.25542 -37.76064 -35.54798 -34.42493 -32.95325 -31.54406 -31.14853 -30.22027 -29.75325 -27.44020 -26.54266 -25.46188 -23.72186 -23.29264 -22.73406 -21.67561 -20.65740 -19.84309 -18.51585 -17.89892 -17.13517 -16.56825 -15.84771 -15.51741 -15.01268 -14.80080 -14.57957 -14.40775 -14.07263 -14.00886 -13.82323 -13.64018 -13.59598 -13.46057 -13.04325 -12.76244 -12.67429 -12.60426 -12.36314 -12.24890 -11.72323 -11.62274 -11.55263 -11.45774 -11.36282 -11.13229 -11.02449 -10.96363 -10.85812 -10.62585 -10.54192 -10.24328 -9.86884 -9.74649 -9.58021 -9.09759 -8.97168 -8.81568 -8.35686 -7.30840 -5.81559 -3.16808 0.84092 1.23107 2.78659 3.12323 3.30992 3.34544 3.41260 3.65590 4.32085 4.48060 4.53603 4.57112 4.78969 4.87399 4.88047 5.06426 5.11261 5.13024 5.20815 5.24023 5.30119 5.32761 5.35391 5.50699 5.53298 5.55779 5.58719 5.62558 5.64534 5.70300 5.79406 5.84797 5.87846 5.90726 5.91546 5.93627 6.05767 6.17645 6.20620 6.24544 6.29554 6.37072 6.40502 6.47144 6.56702 6.65472 6.73833 6.74138 6.87831 7.57036 7.95059 8.25062 8.37579 9.15806 9.88432 10.08437 11.36876 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.003503 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.163517 B = 7991.801224 C = 9134.054251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.059 4.059 5 C -0.126 4.126 6 C -0.065 4.065 7 C -0.127 4.127 8 C 0.557 3.443 9 O -0.548 6.548 10 N -0.597 5.597 11 C 0.104 3.896 12 C -0.149 4.149 13 C 0.185 3.815 14 H 0.060 0.940 15 N -0.744 5.744 16 C -0.240 4.240 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.933 5.933 20 Si 0.878 3.122 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.279 1.279 24 C -0.111 4.111 25 H 0.072 0.928 26 C -0.138 4.138 27 C 0.118 3.882 28 C -0.083 4.083 29 C -0.121 4.121 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.067 0.933 50 H 0.133 0.867 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 -6.753 -20.598 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.203 4.203 4 C -0.059 4.059 5 C -0.144 4.144 6 C -0.084 4.084 7 C -0.130 4.130 8 C 0.346 3.654 9 O -0.427 6.427 10 N -0.328 5.328 11 C -0.018 4.018 12 C -0.190 4.190 13 C 0.075 3.925 14 H 0.078 0.922 15 N -0.387 5.387 16 C -0.370 4.370 17 H 0.108 0.892 18 C -0.189 4.189 19 N -0.581 5.581 20 Si 0.708 3.292 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.131 4.131 25 H 0.090 0.910 26 C -0.196 4.196 27 C -0.005 4.005 28 C -0.101 4.101 29 C -0.139 4.139 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.086 0.914 50 H 0.150 0.850 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.409 -7.152 -20.455 21.936 hybrid contribution -1.152 -0.476 0.500 1.343 sum -4.561 -7.627 -19.955 21.845 Atomic orbital electron populations 1.21870 0.94154 1.02113 1.02115 1.20178 0.96102 0.96239 0.95210 1.21871 1.01420 0.94849 1.02157 1.20045 0.96091 0.94958 0.94786 1.20980 0.99006 0.95967 0.98468 1.21135 0.97929 0.98555 0.90786 1.19898 1.01950 0.97425 0.93748 1.18382 0.77516 0.86786 0.82737 1.90740 1.56460 1.13441 1.82097 1.48057 1.63793 1.08245 1.12736 1.22061 0.99410 0.78352 1.01942 1.22500 0.95053 1.02260 0.99212 1.20187 0.94188 0.89864 0.88283 0.92162 1.42843 1.25201 1.22101 1.48589 1.19056 1.07169 0.94060 1.16700 0.89163 1.24627 0.98377 0.96700 0.99180 1.69687 1.37296 1.19536 1.31567 0.86674 0.84236 0.79970 0.78286 1.21039 1.21764 1.20540 1.21754 0.95951 0.97509 0.97930 0.90993 1.21676 1.02360 0.99130 0.96416 1.21671 0.96132 0.98080 0.84573 1.21460 0.95756 0.93363 0.99539 1.20923 1.00949 1.00529 0.91514 0.92304 0.92493 0.92244 0.90379 0.92358 0.92316 0.92169 0.85640 0.85322 0.90223 0.89940 0.90195 0.92932 0.80622 0.93073 0.91721 0.93492 0.92267 0.89393 0.91433 0.84963 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.00 37.16 0.33 -0.65 16 2 C -0.06 -0.43 3.09 -91.78 -0.28 -0.71 16 3 C -0.15 -1.01 9.00 37.16 0.33 -0.67 16 4 C -0.06 -0.56 4.79 -104.54 -0.50 -1.06 16 5 C -0.13 -1.25 9.65 -39.64 -0.38 -1.63 16 6 C -0.07 -0.78 9.65 -39.18 -0.38 -1.16 16 7 C -0.13 -1.74 5.09 -104.97 -0.53 -2.27 16 8 C 0.56 9.06 7.31 -12.33 -0.09 8.97 16 9 O -0.55 -10.39 16.36 5.32 0.09 -10.31 16 10 N -0.60 -9.47 2.97 -173.88 -0.52 -9.98 16 11 C 0.10 1.60 4.66 -3.71 -0.02 1.58 16 12 C -0.15 -2.40 5.78 -26.61 -0.15 -2.55 16 13 C 0.18 3.29 2.53 -67.89 -0.17 3.12 16 14 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 15 N -0.74 -16.04 3.44 -53.39 -0.18 -16.23 16 16 C -0.24 -6.30 10.41 -15.06 -0.16 -6.46 16 17 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 18 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 19 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 20 Si 0.88 21.37 27.74 -169.99 -4.71 16.66 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 24 C -0.11 -1.73 2.67 -90.50 -0.24 -1.98 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 C -0.14 -2.06 9.05 37.16 0.34 -1.73 16 27 C 0.12 1.90 5.43 -3.71 -0.02 1.88 16 28 C -0.08 -1.01 7.40 -39.19 -0.29 -1.30 16 29 C -0.12 -1.25 8.69 -39.64 -0.34 -1.59 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 33 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16 37 H 0.13 0.95 7.94 -52.49 -0.42 0.54 16 38 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.08 1.37 7.72 -51.93 -0.40 0.97 16 40 H 0.08 1.12 4.80 -51.93 -0.25 0.87 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.36 7.81 3.79 -40.82 -0.15 7.66 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 45 H 0.06 1.09 7.54 -51.93 -0.39 0.69 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 49 H 0.07 1.16 6.64 -51.93 -0.34 0.82 16 50 H 0.13 1.62 6.70 -52.49 -0.35 1.26 16 51 H 0.13 1.11 7.08 -52.48 -0.37 0.73 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -30.99 392.51 -9.75 -40.74 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.46 Total: 8.86 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.65 Total: -8.12 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.07 Total: -53.75 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.99 -9.75 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.161 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds