Wall clock time and date at job start Sat Apr 11 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46861 * 2 1 4 4 C 1.50694 * 109.46986 * 120.00187 * 2 1 3 5 5 C 1.38358 * 119.85330 * 120.00256 * 4 2 1 6 6 C 1.37955 * 120.14892 * 180.02562 * 5 4 2 7 7 C 1.39583 * 119.84992 * 359.97438 * 6 5 4 8 8 C 1.47850 * 120.14388 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99813 * 318.96114 * 8 7 6 10 10 N 1.34769 * 119.99944 * 138.96427 * 8 7 6 11 11 C 1.46929 * 120.63211 * 354.16735 * 10 8 7 12 12 C 1.53196 * 108.77423 * 233.58321 * 11 10 8 13 13 C 1.53034 * 109.31463 * 305.36362 * 12 11 10 14 14 H 1.08997 * 109.45910 * 181.37944 * 13 12 11 15 15 N 1.46497 * 109.45114 * 301.35352 * 13 12 11 16 16 C 1.36942 * 119.99907 * 275.06075 * 15 13 12 17 17 H 1.08002 * 119.99751 * 359.97438 * 16 15 13 18 18 C 1.38805 * 120.00120 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00059 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00088 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47126 * 90.00010 * 20 18 16 22 22 H 1.48497 * 109.47259 * 210.00343 * 20 18 16 23 23 H 1.48507 * 109.46823 * 330.00191 * 20 18 16 24 24 C 1.53044 * 109.53529 * 61.36674 * 13 12 11 25 25 H 1.08998 * 109.49699 * 58.58653 * 24 13 12 26 26 C 1.53006 * 109.49767 * 178.68254 * 24 13 12 27 27 C 1.46932 * 120.63078 * 174.14214 * 10 8 7 28 28 C 1.39572 * 119.71200 * 0.24736 * 7 6 5 29 29 C 1.37958 * 119.85031 * 359.52062 * 28 7 6 30 30 H 1.09001 * 109.47351 * 60.00024 * 1 2 3 31 31 H 1.09008 * 109.47161 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47539 * 299.99745 * 1 2 3 33 33 H 1.09002 * 109.47061 * 240.00645 * 2 1 3 34 34 H 1.08997 * 109.47037 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47858 * 300.00108 * 3 2 1 36 36 H 1.09001 * 109.47423 * 60.00117 * 3 2 1 37 37 H 1.08002 * 119.92828 * 0.02562 * 5 4 2 38 38 H 1.08001 * 120.08158 * 179.97438 * 6 5 4 39 39 H 1.09003 * 109.58482 * 113.79909 * 11 10 8 40 40 H 1.08997 * 109.58683 * 353.36991 * 11 10 8 41 41 H 1.08998 * 109.49312 * 185.41074 * 12 11 10 42 42 H 1.08994 * 109.51942 * 65.33604 * 12 11 10 43 43 H 0.96996 * 120.00524 * 95.06260 * 15 13 12 44 44 H 0.97002 * 120.00293 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.47194 * 59.99599 * 26 24 13 46 46 H 1.08997 * 109.47409 * 179.97438 * 26 24 13 47 47 H 1.09001 * 109.46729 * 300.00227 * 26 24 13 48 48 H 1.08997 * 109.58134 * 6.62938 * 27 10 8 49 49 H 1.08993 * 109.58530 * 246.20300 * 27 10 8 50 50 H 1.07999 * 120.07861 * 179.72384 * 28 7 6 51 51 H 1.08003 * 119.92946 * 180.22779 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8276 -1.8351 1.0999 6 6 3.2903 -2.4905 2.2222 7 6 2.9549 -2.0163 3.4914 8 6 3.4468 -2.7140 4.6986 9 8 3.4583 -3.9289 4.7360 10 7 3.8822 -2.0030 5.7574 11 6 3.9945 -0.5399 5.6816 12 6 5.4147 -0.1328 6.0869 13 6 5.7351 -0.7172 7.4645 14 1 6.7360 -0.4086 7.7660 15 7 4.7586 -0.2282 8.4410 16 6 4.9496 0.9816 9.0535 17 1 5.8204 1.5750 8.8170 18 6 4.0247 1.4446 9.9791 19 7 4.2081 2.6076 10.5674 20 14 2.5189 0.4178 10.3888 21 1 2.8307 -0.4870 11.5243 22 1 1.3958 1.3140 10.7639 23 1 2.1331 -0.3898 9.2037 24 6 5.6705 -2.2449 7.3999 25 1 6.3792 -2.6078 6.6556 26 6 6.0230 -2.8293 8.7693 27 6 4.2532 -2.6760 7.0097 28 6 2.1484 -0.8840 3.6160 29 6 1.6963 -0.2351 2.4856 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.0867 -2.2007 0.1173 38 1 3.9107 -3.3685 2.1190 39 1 3.2753 -0.0826 6.3611 40 1 3.7971 -0.2106 4.6615 41 1 5.4837 0.9543 6.1278 42 1 6.1260 -0.5151 5.3550 43 1 3.9767 -0.7614 8.6538 44 1 3.5615 2.9314 11.2140 45 1 5.3130 -2.4669 9.5128 46 1 5.9765 -3.9173 8.7230 47 1 7.0304 -2.5198 9.0479 48 1 4.2265 -3.7561 6.8657 49 1 3.5552 -2.3929 7.7973 50 1 1.8816 -0.5146 4.5952 51 1 1.0752 0.6433 2.5806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036282186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:58 Heat of formation + Delta-G solvation = -22.387477 kcal Electronic energy + Delta-G solvation = -29211.157971 eV Core-core repulsion = 25495.448500 eV Total energy + Delta-G solvation = -3715.709471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.79658 -40.25400 -39.09231 -36.35057 -35.92824 -34.53172 -33.19478 -32.01979 -31.51345 -31.04600 -27.94505 -27.75946 -26.85123 -25.14903 -24.54391 -23.73208 -23.01721 -21.58106 -20.79103 -19.99572 -19.75003 -18.35643 -17.60135 -16.95843 -16.57545 -16.53987 -16.08517 -15.82071 -15.61686 -15.35568 -15.13401 -14.88082 -14.78978 -14.49979 -14.46190 -14.35191 -14.20917 -13.74358 -13.56596 -13.44506 -13.31512 -13.04767 -12.95971 -12.82764 -12.67081 -12.52292 -12.29942 -12.06790 -12.03480 -11.95842 -11.95208 -11.79493 -11.69104 -11.51783 -11.23657 -11.03815 -10.87848 -9.93397 -9.80465 -9.60847 -9.24073 -7.98386 -5.29515 -0.07928 0.38508 1.35810 1.37958 1.44540 1.62171 1.91565 2.48688 2.74500 3.33237 3.37914 3.59446 3.70528 3.78508 3.80922 3.94482 3.96646 4.00684 4.17128 4.23316 4.29401 4.34071 4.39167 4.45319 4.50663 4.52176 4.54222 4.65844 4.76113 4.84922 4.86353 4.91198 4.95710 4.97399 5.03480 5.06157 5.08943 5.12030 5.15897 5.21552 5.23767 5.32113 5.37806 5.40092 5.41609 5.42499 5.57295 5.66559 5.83842 5.92065 6.25286 6.31937 6.99878 7.11929 7.88276 8.07075 9.23465 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.003503 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.163517 B = 7991.801224 C = 9134.054251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.052 4.052 5 C -0.122 4.122 6 C -0.073 4.073 7 C -0.150 4.150 8 C 0.557 3.443 9 O -0.580 6.580 10 N -0.597 5.597 11 C 0.113 3.887 12 C -0.143 4.143 13 C 0.178 3.822 14 H 0.052 0.948 15 N -0.741 5.741 16 C -0.212 4.212 17 H 0.062 0.938 18 C -0.058 4.058 19 N -0.983 5.983 20 Si 0.939 3.061 21 H -0.283 1.283 22 H -0.299 1.299 23 H -0.258 1.258 24 C -0.100 4.100 25 H 0.088 0.912 26 C -0.135 4.135 27 C 0.118 3.882 28 C -0.091 4.091 29 C -0.121 4.121 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.153 0.847 38 H 0.128 0.872 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.362 0.638 44 H 0.255 0.745 45 H 0.043 0.957 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.089 0.911 49 H 0.056 0.944 50 H 0.127 0.873 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -7.811 -23.357 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.203 4.203 4 C -0.052 4.052 5 C -0.140 4.140 6 C -0.091 4.091 7 C -0.153 4.153 8 C 0.347 3.653 9 O -0.462 6.462 10 N -0.327 5.327 11 C -0.009 4.009 12 C -0.183 4.183 13 C 0.070 3.930 14 H 0.070 0.930 15 N -0.385 5.385 16 C -0.344 4.344 17 H 0.080 0.920 18 C -0.249 4.249 19 N -0.635 5.635 20 Si 0.768 3.232 21 H -0.209 1.209 22 H -0.227 1.227 23 H -0.183 1.183 24 C -0.120 4.120 25 H 0.107 0.893 26 C -0.193 4.193 27 C -0.005 4.005 28 C -0.109 4.109 29 C -0.139 4.139 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.170 0.830 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.196 0.804 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.108 0.892 49 H 0.074 0.926 50 H 0.145 0.855 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.048 -8.244 -23.257 25.005 hybrid contribution -0.874 -0.138 1.224 1.510 sum -4.922 -8.381 -22.033 24.082 Atomic orbital electron populations 1.21874 0.93646 1.02037 1.02687 1.20239 0.96428 0.96323 0.94504 1.21874 1.01140 0.94601 1.02675 1.20377 0.94910 0.94523 0.95401 1.21277 0.98159 0.95577 0.98960 1.21248 0.98247 0.98810 0.90846 1.19794 1.03762 0.98503 0.93200 1.18802 0.76694 0.86476 0.83283 1.90712 1.57879 1.14837 1.82765 1.48082 1.63685 1.08286 1.12679 1.21978 0.98205 0.78046 1.02691 1.22383 0.96181 1.01355 0.98417 1.20397 0.92707 0.91692 0.88205 0.93038 1.42791 1.26054 1.20603 1.49079 1.18994 1.05297 0.94743 1.15321 0.92015 1.25278 1.01646 0.97943 1.00051 1.69851 1.38668 1.21807 1.33150 0.85660 0.80482 0.78416 0.78644 1.20909 1.22655 1.18281 1.21665 0.96112 0.95402 0.98847 0.89345 1.21654 1.01820 1.00569 0.95278 1.21632 0.96051 0.98236 0.84533 1.21452 0.96113 0.93320 1.00061 1.21134 1.00715 1.00758 0.91315 0.90935 0.92889 0.92570 0.88966 0.92799 0.90977 0.92571 0.82977 0.85406 0.92118 0.87897 0.91497 0.90769 0.80395 0.93602 0.93744 0.91224 0.91998 0.89233 0.92561 0.85514 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.00 71.98 0.65 -0.89 16 2 C -0.06 -0.64 3.09 -11.54 -0.04 -0.68 16 3 C -0.15 -1.59 9.00 71.98 0.65 -0.94 16 4 C -0.05 -0.84 4.79 -19.81 -0.09 -0.94 16 5 C -0.12 -2.08 9.65 22.23 0.21 -1.86 16 6 C -0.07 -1.63 9.65 22.53 0.22 -1.41 16 7 C -0.15 -3.92 5.09 -20.09 -0.10 -4.02 16 8 C 0.56 17.67 7.31 86.79 0.63 18.31 16 9 O -0.58 -21.72 16.36 -3.88 -0.06 -21.79 16 10 N -0.60 -18.31 2.97 -822.30 -2.44 -20.76 16 11 C 0.11 3.34 4.66 86.36 0.40 3.75 16 12 C -0.14 -4.43 5.78 30.67 0.18 -4.26 16 13 C 0.18 6.22 2.53 45.02 0.11 6.33 16 14 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 15 N -0.74 -31.82 3.44 -322.82 -1.11 -32.93 16 16 C -0.21 -11.33 10.41 84.03 0.87 -10.45 16 17 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 18 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 19 N -0.98 -61.41 13.97 21.65 0.30 -61.11 16 20 Si 0.94 44.65 27.74 68.60 1.90 46.56 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 23 H -0.26 -11.17 6.52 99.48 0.65 -10.52 16 24 C -0.10 -2.97 2.67 -10.71 -0.03 -3.00 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 26 C -0.14 -3.85 9.05 71.98 0.65 -3.20 16 27 C 0.12 3.68 5.43 86.36 0.47 4.14 16 28 C -0.09 -2.10 7.40 22.53 0.17 -1.93 16 29 C -0.12 -2.24 8.69 22.23 0.19 -2.05 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.63 7.38 -2.39 -0.02 0.62 16 33 H 0.09 0.83 7.87 -2.39 -0.02 0.81 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.66 7.38 -2.39 -0.02 0.64 16 37 H 0.15 1.74 7.94 -2.91 -0.02 1.72 16 38 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.06 2.05 7.72 -2.39 -0.02 2.03 16 40 H 0.10 2.66 4.80 -2.39 -0.01 2.64 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.36 15.43 3.79 -92.71 -0.35 15.08 16 44 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.04 1.44 7.54 -2.39 -0.02 1.42 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.09 2.79 7.00 -2.39 -0.02 2.78 16 49 H 0.06 1.88 6.64 -2.39 -0.02 1.86 16 50 H 0.13 3.00 6.70 -2.91 -0.02 2.98 16 51 H 0.14 2.15 7.08 -2.91 -0.02 2.13 16 Total: -1.00 -67.78 392.51 4.70 -63.08 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.50 Total: 32.86 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 5.62 Total: -5.91 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -3.25 Total: -114.80 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.79 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.56 kcal Total: -67.78 4.70 -63.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.688 kcal (2) G-P(sol) polarization free energy of solvation -67.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds