Wall clock time and date at job start Sat Apr 11 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47279 * 2 1 4 4 C 1.50701 * 109.46811 * 119.99926 * 2 1 3 5 5 C 1.38359 * 119.85147 * 299.97521 * 4 2 1 6 6 C 1.37962 * 120.14569 * 179.97438 * 5 4 2 7 7 C 1.39577 * 119.84780 * 0.02716 * 6 5 4 8 8 C 1.47849 * 120.14309 * 179.97438 * 7 6 5 9 9 O 1.21553 * 120.00331 * 129.47876 * 8 7 6 10 10 N 1.34785 * 119.99846 * 309.48560 * 8 7 6 11 11 C 1.46920 * 120.63191 * 3.50657 * 10 8 7 12 12 C 1.52761 * 109.00830 * 233.58608 * 11 10 8 13 13 C 1.53040 * 109.38121 * 305.58963 * 12 11 10 14 14 H 1.08996 * 109.45733 * 301.21600 * 13 12 11 15 15 N 1.46505 * 109.46092 * 181.26096 * 13 12 11 16 16 C 1.36940 * 119.99908 * 84.92450 * 15 13 12 17 17 H 1.08001 * 119.99925 * 0.02562 * 16 15 13 18 18 C 1.38809 * 119.99664 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99933 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00409 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47461 * 89.99521 * 20 18 16 22 22 H 1.48501 * 109.47394 * 209.99853 * 20 18 16 23 23 H 1.48504 * 109.46977 * 329.99828 * 20 18 16 24 24 C 1.53032 * 109.54117 * 61.23816 * 13 12 11 25 25 H 1.08999 * 109.50015 * 58.59031 * 24 13 12 26 26 C 1.53002 * 109.49864 * 178.68567 * 24 13 12 27 27 C 1.46924 * 120.62536 * 183.78494 * 10 8 7 28 28 C 1.39576 * 119.71533 * 359.97438 * 7 6 5 29 29 C 1.37960 * 119.85209 * 0.02562 * 28 7 6 30 30 H 1.08998 * 109.47287 * 300.00264 * 1 2 3 31 31 H 1.09010 * 109.46862 * 60.00248 * 1 2 3 32 32 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47287 * 239.99736 * 2 1 3 34 34 H 1.08998 * 109.47325 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46709 * 299.99620 * 3 2 1 36 36 H 1.08998 * 109.47177 * 59.99668 * 3 2 1 37 37 H 1.07998 * 119.93407 * 0.02562 * 5 4 2 38 38 H 1.07995 * 120.07670 * 180.29572 * 6 5 4 39 39 H 1.09002 * 109.58318 * 353.41494 * 11 10 8 40 40 H 1.08991 * 109.58940 * 113.84311 * 11 10 8 41 41 H 1.08998 * 109.56533 * 185.55051 * 12 11 10 42 42 H 1.09004 * 109.35963 * 65.49429 * 12 11 10 43 43 H 0.96997 * 120.00157 * 264.93381 * 15 13 12 44 44 H 0.96993 * 119.99980 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.47293 * 179.83885 * 26 24 13 46 46 H 1.09001 * 109.47028 * 299.83740 * 26 24 13 47 47 H 1.08996 * 109.47408 * 59.83886 * 26 24 13 48 48 H 1.09004 * 109.58725 * 246.14898 * 27 10 8 49 49 H 1.09000 * 109.59047 * 6.43876 * 27 10 8 50 50 H 1.07997 * 120.07063 * 179.97438 * 28 7 6 51 51 H 1.07999 * 119.92805 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.6965 -0.2347 2.4856 6 6 2.1525 -0.8807 3.6162 7 6 2.9547 -2.0161 3.4916 8 6 3.4475 -2.7130 4.6988 9 8 3.3018 -3.9148 4.8089 10 7 4.0582 -2.0158 5.6774 11 6 4.1736 -0.5535 5.5946 12 6 5.6398 -0.1597 5.7643 13 6 6.1799 -0.7606 7.0640 14 1 5.5876 -0.3994 7.9047 15 7 7.5774 -0.3591 7.2436 16 6 7.8746 0.8431 7.8281 17 1 7.0789 1.4951 8.1570 18 6 9.1987 1.2232 7.9987 19 7 9.4844 2.3785 8.5609 20 14 10.5750 0.0953 7.4306 21 1 10.9250 0.4118 6.0225 22 1 11.7668 0.2948 8.2937 23 1 10.1273 -1.3176 7.5237 24 6 6.0926 -2.2870 6.9973 25 1 6.6645 -2.6471 6.1422 26 6 6.6630 -2.8879 8.2836 27 6 4.6265 -2.7044 6.8442 28 6 3.2897 -2.4906 2.2225 29 6 2.8271 -1.8353 1.1001 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.0754 0.6437 2.5806 38 1 1.8858 -0.5112 4.5953 39 1 3.8154 -0.2132 4.6230 40 1 3.5810 -0.0948 6.3860 41 1 5.7239 0.9264 5.8030 42 1 6.2160 -0.5399 4.9207 43 1 8.2920 -0.9447 6.9485 44 1 10.4096 2.6440 8.6805 45 1 6.5979 -3.9750 8.2368 46 1 7.7060 -2.5907 8.3920 47 1 6.0913 -2.5262 9.1382 48 1 4.0716 -2.4246 7.7398 49 1 4.5648 -3.7828 6.6981 50 1 3.9104 -3.3684 2.1194 51 1 3.0852 -2.2017 0.1175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036282187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:02 Heat of formation + Delta-G solvation = -9.651268 kcal Electronic energy + Delta-G solvation = -28707.055428 eV Core-core repulsion = 24991.898240 eV Total energy + Delta-G solvation = -3715.157187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69113 -39.26905 -37.72272 -35.60543 -34.74780 -32.96430 -31.60527 -31.23489 -30.34042 -29.78880 -27.47607 -26.62343 -25.40055 -23.87315 -23.14182 -22.33211 -21.60675 -20.65848 -20.05567 -19.37876 -17.63830 -17.26835 -16.64327 -15.93924 -15.65095 -15.02487 -14.86815 -14.68678 -14.36395 -14.14540 -13.99333 -13.88823 -13.75979 -13.59310 -13.32392 -13.03139 -12.84695 -12.71216 -12.51276 -12.46739 -12.24799 -11.89705 -11.77622 -11.60507 -11.49270 -11.39149 -11.18440 -11.05700 -10.97261 -10.87352 -10.69817 -10.53636 -10.25227 -9.84737 -9.79451 -9.60564 -9.16117 -8.96691 -8.85562 -8.54046 -7.29392 -5.80190 -3.15493 0.81624 1.16141 2.64758 3.00767 3.34880 3.38333 3.43467 3.55352 4.26555 4.43069 4.46862 4.56280 4.70863 4.81408 4.84396 4.99473 5.03581 5.07296 5.14426 5.16875 5.23459 5.27962 5.28920 5.43801 5.49004 5.51592 5.53589 5.57351 5.59559 5.64821 5.71930 5.78398 5.84544 5.85926 5.90822 5.95523 6.02102 6.10593 6.10857 6.17724 6.27094 6.28543 6.35047 6.40413 6.50161 6.66667 6.67794 6.77135 6.93120 7.42653 7.95443 8.13917 8.39028 9.17244 9.90149 10.10203 11.38141 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.002985 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.424060 B = 9377.014124 C =10573.803371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.060 4.060 5 C -0.120 4.120 6 C -0.086 4.086 7 C -0.124 4.124 8 C 0.559 3.441 9 O -0.544 6.544 10 N -0.599 5.599 11 C 0.097 3.903 12 C -0.152 4.152 13 C 0.189 3.811 14 H 0.057 0.943 15 N -0.745 5.745 16 C -0.241 4.241 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.882 3.118 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.114 4.114 25 H 0.068 0.932 26 C -0.137 4.137 27 C 0.121 3.879 28 C -0.068 4.068 29 C -0.122 4.122 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.045 0.955 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.128 0.872 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.990 -6.309 -15.352 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.203 4.203 4 C -0.060 4.060 5 C -0.138 4.138 6 C -0.105 4.105 7 C -0.127 4.127 8 C 0.347 3.653 9 O -0.423 6.423 10 N -0.330 5.330 11 C -0.026 4.026 12 C -0.193 4.193 13 C 0.079 3.921 14 H 0.075 0.925 15 N -0.387 5.387 16 C -0.371 4.371 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.582 5.582 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.134 4.134 25 H 0.087 0.913 26 C -0.195 4.195 27 C -0.002 4.002 28 C -0.087 4.087 29 C -0.140 4.140 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.107 0.893 50 H 0.146 0.854 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.054 -6.700 -15.130 24.490 hybrid contribution 1.248 -0.563 -0.361 1.416 sum -16.806 -7.264 -15.491 23.983 Atomic orbital electron populations 1.21865 0.94155 1.02096 1.02077 1.20185 0.96081 0.96276 0.95242 1.21872 1.01535 0.94791 1.02108 1.20039 0.96171 0.94969 0.94830 1.20901 1.00855 1.00458 0.91548 1.21305 0.96307 0.93549 0.99295 1.19868 1.01808 0.97295 0.93730 1.18398 0.77777 0.86586 0.82514 1.90762 1.57586 1.14323 1.79599 1.48101 1.55703 1.08128 1.21107 1.22081 0.98999 0.78803 1.02671 1.22567 0.93234 1.02560 1.00909 1.20171 0.87043 0.90225 0.94658 0.92515 1.42774 1.01060 1.21274 1.73588 1.19045 0.93138 0.93670 1.31253 0.89211 1.24654 0.96819 0.96775 1.00804 1.69695 1.18184 1.21232 1.49045 0.86589 0.82977 0.80776 0.78385 1.21187 1.21794 1.20305 1.21787 0.94810 0.97685 0.99079 0.91346 1.21672 1.02418 0.98935 0.96488 1.21710 0.93327 0.98173 0.86953 1.21111 0.98009 0.98745 0.90787 1.20996 0.98676 0.95827 0.98520 0.92303 0.92292 0.92491 0.90339 0.92276 0.92293 0.92233 0.85495 0.85193 0.89384 0.91205 0.90021 0.92327 0.80635 0.93069 0.93555 0.91372 0.92532 0.91246 0.89254 0.85402 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.00 37.16 0.33 -0.53 16 2 C -0.06 -0.40 3.09 -91.77 -0.28 -0.69 16 3 C -0.15 -0.95 9.00 37.16 0.33 -0.61 16 4 C -0.06 -0.53 4.79 -104.53 -0.50 -1.03 16 5 C -0.12 -1.07 8.69 -39.64 -0.34 -1.42 16 6 C -0.09 -0.89 7.36 -39.18 -0.29 -1.18 16 7 C -0.12 -1.55 5.00 -104.97 -0.53 -2.08 16 8 C 0.56 8.33 7.24 -12.32 -0.09 8.24 16 9 O -0.54 -9.74 16.47 5.32 0.09 -9.66 16 10 N -0.60 -8.36 2.98 -174.14 -0.52 -8.88 16 11 C 0.10 1.25 5.34 -3.94 -0.02 1.23 16 12 C -0.15 -2.44 5.64 -26.83 -0.15 -2.60 16 13 C 0.19 3.40 2.19 -67.89 -0.15 3.25 16 14 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 15 N -0.75 -16.74 4.22 -53.39 -0.23 -16.96 16 16 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 17 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -28.76 13.97 55.49 0.78 -27.98 16 20 Si 0.88 21.80 27.74 -169.99 -4.71 17.09 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 24 C -0.11 -1.77 2.46 -90.50 -0.22 -1.99 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 26 C -0.14 -2.09 9.02 37.16 0.34 -1.75 16 27 C 0.12 1.70 5.71 -3.71 -0.02 1.68 16 28 C -0.07 -0.78 9.74 -39.18 -0.38 -1.16 16 29 C -0.12 -1.16 9.65 -39.64 -0.38 -1.54 16 30 H 0.06 0.35 7.38 -51.93 -0.38 -0.04 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.38 7.37 -51.93 -0.38 0.00 16 37 H 0.13 0.90 7.08 -52.49 -0.37 0.53 16 38 H 0.13 1.20 7.08 -52.49 -0.37 0.82 16 39 H 0.09 1.02 4.56 -51.93 -0.24 0.79 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.36 8.16 5.36 -40.82 -0.22 7.94 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.19 7.36 -51.93 -0.38 0.81 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.09 1.31 7.02 -51.93 -0.36 0.94 16 50 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 51 H 0.13 0.93 7.94 -52.49 -0.42 0.52 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -32.06 397.04 -9.84 -41.91 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.62 Total: 7.29 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -2.61 Total: -8.78 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.03 Total: -53.83 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.06 -9.84 -41.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.254 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds