Wall clock time and date at job start Sat Apr 11 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47279 * 2 1 4 4 C 1.50701 * 109.46811 * 119.99926 * 2 1 3 5 5 C 1.38359 * 119.85147 * 299.97521 * 4 2 1 6 6 C 1.37962 * 120.14569 * 179.97438 * 5 4 2 7 7 C 1.39577 * 119.84780 * 0.02716 * 6 5 4 8 8 C 1.47849 * 120.14309 * 179.97438 * 7 6 5 9 9 O 1.21553 * 120.00331 * 129.47876 * 8 7 6 10 10 N 1.34785 * 119.99846 * 309.48560 * 8 7 6 11 11 C 1.46920 * 120.63191 * 3.50657 * 10 8 7 12 12 C 1.52761 * 109.00830 * 233.58608 * 11 10 8 13 13 C 1.53040 * 109.38121 * 305.58963 * 12 11 10 14 14 H 1.08996 * 109.45733 * 301.21600 * 13 12 11 15 15 N 1.46505 * 109.46092 * 181.26096 * 13 12 11 16 16 C 1.36940 * 119.99908 * 84.92450 * 15 13 12 17 17 H 1.08001 * 119.99925 * 0.02562 * 16 15 13 18 18 C 1.38809 * 119.99664 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99933 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00409 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47461 * 89.99521 * 20 18 16 22 22 H 1.48501 * 109.47394 * 209.99853 * 20 18 16 23 23 H 1.48504 * 109.46977 * 329.99828 * 20 18 16 24 24 C 1.53032 * 109.54117 * 61.23816 * 13 12 11 25 25 H 1.08999 * 109.50015 * 58.59031 * 24 13 12 26 26 C 1.53002 * 109.49864 * 178.68567 * 24 13 12 27 27 C 1.46924 * 120.62536 * 183.78494 * 10 8 7 28 28 C 1.39576 * 119.71533 * 359.97438 * 7 6 5 29 29 C 1.37960 * 119.85209 * 0.02562 * 28 7 6 30 30 H 1.08998 * 109.47287 * 300.00264 * 1 2 3 31 31 H 1.09010 * 109.46862 * 60.00248 * 1 2 3 32 32 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47287 * 239.99736 * 2 1 3 34 34 H 1.08998 * 109.47325 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46709 * 299.99620 * 3 2 1 36 36 H 1.08998 * 109.47177 * 59.99668 * 3 2 1 37 37 H 1.07998 * 119.93407 * 0.02562 * 5 4 2 38 38 H 1.07995 * 120.07670 * 180.29572 * 6 5 4 39 39 H 1.09002 * 109.58318 * 353.41494 * 11 10 8 40 40 H 1.08991 * 109.58940 * 113.84311 * 11 10 8 41 41 H 1.08998 * 109.56533 * 185.55051 * 12 11 10 42 42 H 1.09004 * 109.35963 * 65.49429 * 12 11 10 43 43 H 0.96997 * 120.00157 * 264.93381 * 15 13 12 44 44 H 0.96993 * 119.99980 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.47293 * 179.83885 * 26 24 13 46 46 H 1.09001 * 109.47028 * 299.83740 * 26 24 13 47 47 H 1.08996 * 109.47408 * 59.83886 * 26 24 13 48 48 H 1.09004 * 109.58725 * 246.14898 * 27 10 8 49 49 H 1.09000 * 109.59047 * 6.43876 * 27 10 8 50 50 H 1.07997 * 120.07063 * 179.97438 * 28 7 6 51 51 H 1.07999 * 119.92805 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.6965 -0.2347 2.4856 6 6 2.1525 -0.8807 3.6162 7 6 2.9547 -2.0161 3.4916 8 6 3.4475 -2.7130 4.6988 9 8 3.3018 -3.9148 4.8089 10 7 4.0582 -2.0158 5.6774 11 6 4.1736 -0.5535 5.5946 12 6 5.6398 -0.1597 5.7643 13 6 6.1799 -0.7606 7.0640 14 1 5.5876 -0.3994 7.9047 15 7 7.5774 -0.3591 7.2436 16 6 7.8746 0.8431 7.8281 17 1 7.0789 1.4951 8.1570 18 6 9.1987 1.2232 7.9987 19 7 9.4844 2.3785 8.5609 20 14 10.5750 0.0953 7.4306 21 1 10.9250 0.4118 6.0225 22 1 11.7668 0.2948 8.2937 23 1 10.1273 -1.3176 7.5237 24 6 6.0926 -2.2870 6.9973 25 1 6.6645 -2.6471 6.1422 26 6 6.6630 -2.8879 8.2836 27 6 4.6265 -2.7044 6.8442 28 6 3.2897 -2.4906 2.2225 29 6 2.8271 -1.8353 1.1001 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.0754 0.6437 2.5806 38 1 1.8858 -0.5112 4.5953 39 1 3.8154 -0.2132 4.6230 40 1 3.5810 -0.0948 6.3860 41 1 5.7239 0.9264 5.8030 42 1 6.2160 -0.5399 4.9207 43 1 8.2920 -0.9447 6.9485 44 1 10.4096 2.6440 8.6805 45 1 6.5979 -3.9750 8.2368 46 1 7.7060 -2.5907 8.3920 47 1 6.0913 -2.5262 9.1382 48 1 4.0716 -2.4246 7.7398 49 1 4.5648 -3.7828 6.6981 50 1 3.9104 -3.3684 2.1194 51 1 3.0852 -2.2017 0.1175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036282187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:02 Heat of formation + Delta-G solvation = -26.830130 kcal Electronic energy + Delta-G solvation = -28707.800359 eV Core-core repulsion = 24991.898240 eV Total energy + Delta-G solvation = -3715.902119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.73343 -40.17891 -39.01789 -36.42389 -36.15623 -34.49519 -33.26607 -32.02569 -31.59948 -30.98982 -27.93407 -27.76712 -26.88159 -24.98741 -24.16085 -23.49352 -23.02198 -21.68239 -21.05540 -20.53951 -19.47649 -18.40603 -17.60275 -16.90172 -16.76305 -16.51374 -16.05205 -15.75396 -15.67158 -15.26368 -15.02886 -14.86145 -14.76076 -14.53528 -14.43834 -14.28673 -14.05268 -13.87082 -13.53230 -13.45141 -13.38377 -13.01213 -12.96306 -12.86518 -12.75137 -12.47925 -12.26409 -12.10153 -12.05479 -11.97931 -11.90240 -11.80145 -11.77091 -11.51114 -11.21551 -11.03768 -10.86781 -9.92533 -9.80211 -9.61371 -9.26548 -8.00135 -5.31991 -0.00890 0.40032 1.37704 1.38913 1.46315 1.55541 1.93834 2.48931 2.74092 3.31267 3.37393 3.52893 3.71363 3.78520 3.81637 3.95587 3.98863 4.02383 4.18905 4.23673 4.32356 4.34955 4.41158 4.45948 4.52389 4.52855 4.60797 4.70445 4.76334 4.79316 4.86121 4.88462 4.91978 4.96291 4.99070 5.04341 5.06883 5.12028 5.17235 5.23527 5.32572 5.35384 5.38356 5.40772 5.43622 5.45538 5.57775 5.67996 5.80169 5.93706 6.24067 6.29903 7.00473 7.09864 7.86626 8.05066 9.21396 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.002985 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.424060 B = 9377.014124 C =10573.803371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.057 4.057 5 C -0.119 4.119 6 C -0.088 4.088 7 C -0.147 4.147 8 C 0.559 3.441 9 O -0.581 6.581 10 N -0.598 5.598 11 C 0.107 3.893 12 C -0.143 4.143 13 C 0.183 3.817 14 H 0.051 0.949 15 N -0.748 5.748 16 C -0.217 4.217 17 H 0.063 0.937 18 C -0.062 4.062 19 N -0.984 5.984 20 Si 0.946 3.054 21 H -0.283 1.283 22 H -0.299 1.299 23 H -0.254 1.254 24 C -0.103 4.103 25 H 0.061 0.939 26 C -0.134 4.134 27 C 0.125 3.875 28 C -0.082 4.082 29 C -0.124 4.124 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.362 0.638 44 H 0.256 0.744 45 H 0.068 0.932 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.121 0.879 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.611 -6.922 -17.052 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.203 4.203 4 C -0.057 4.057 5 C -0.136 4.136 6 C -0.107 4.107 7 C -0.150 4.150 8 C 0.349 3.651 9 O -0.462 6.462 10 N -0.328 5.328 11 C -0.016 4.016 12 C -0.184 4.184 13 C 0.075 3.925 14 H 0.069 0.931 15 N -0.390 5.390 16 C -0.348 4.348 17 H 0.080 0.920 18 C -0.254 4.254 19 N -0.635 5.635 20 Si 0.774 3.226 21 H -0.210 1.210 22 H -0.226 1.226 23 H -0.179 1.179 24 C -0.123 4.123 25 H 0.079 0.921 26 C -0.192 4.192 27 C 0.002 3.998 28 C -0.101 4.101 29 C -0.142 4.142 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.195 0.805 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.139 0.861 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.720 -7.344 -16.851 26.959 hybrid contribution 1.623 -0.342 0.118 1.663 sum -18.096 -7.686 -16.733 25.818 Atomic orbital electron populations 1.21861 0.93351 1.02039 1.02823 1.20232 0.96649 0.96263 0.94466 1.21874 1.00929 0.94636 1.02831 1.20365 0.95098 0.94455 0.95758 1.21184 1.00503 1.00810 0.91124 1.21452 0.95871 0.92897 1.00465 1.19804 1.03686 0.98610 0.92920 1.18789 0.77171 0.86202 0.82962 1.90732 1.59179 1.15941 1.80330 1.48144 1.55331 1.08437 1.20936 1.22071 0.96753 0.78278 1.04455 1.22379 0.95445 1.01342 0.99224 1.20403 0.84600 0.92154 0.95340 0.93055 1.42792 1.03134 1.19808 1.73234 1.19002 0.92248 0.94318 1.29214 0.91951 1.25373 0.99447 0.98398 1.02154 1.69861 1.18366 1.23557 1.51708 0.85545 0.79497 0.80038 0.77495 1.20997 1.22606 1.17881 1.21659 0.96016 0.95517 0.99116 0.92082 1.21637 1.00847 1.00452 0.96285 1.21657 0.92274 0.98100 0.87736 1.21194 0.98635 0.99033 0.91265 1.21235 0.98359 0.95858 0.98754 0.92079 0.91106 0.92946 0.89571 0.93218 0.91104 0.92065 0.83277 0.84033 0.87633 0.89345 0.91497 0.93149 0.80510 0.93540 0.91275 0.93665 0.92128 0.89665 0.89499 0.86106 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.00 71.98 0.65 -0.66 16 2 C -0.06 -0.62 3.09 -11.54 -0.04 -0.66 16 3 C -0.15 -1.50 9.00 71.98 0.65 -0.85 16 4 C -0.06 -0.86 4.79 -19.81 -0.09 -0.95 16 5 C -0.12 -1.81 8.69 22.23 0.19 -1.62 16 6 C -0.09 -1.65 7.36 22.53 0.17 -1.49 16 7 C -0.15 -3.52 5.00 -20.09 -0.10 -3.62 16 8 C 0.56 16.19 7.24 86.79 0.63 16.81 16 9 O -0.58 -20.68 16.47 -3.88 -0.06 -20.74 16 10 N -0.60 -15.84 2.98 -823.14 -2.45 -18.29 16 11 C 0.11 2.56 5.34 86.22 0.46 3.02 16 12 C -0.14 -4.49 5.64 30.53 0.17 -4.32 16 13 C 0.18 6.45 2.19 45.01 0.10 6.55 16 14 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 15 N -0.75 -33.28 4.22 -322.82 -1.36 -34.64 16 16 C -0.22 -11.82 10.41 84.03 0.87 -10.95 16 17 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 18 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 19 N -0.98 -62.15 13.97 21.65 0.30 -61.85 16 20 Si 0.95 45.33 27.74 68.60 1.90 47.23 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.25 -11.06 6.52 99.48 0.65 -10.41 16 24 C -0.10 -3.08 2.46 -10.72 -0.03 -3.11 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 C -0.13 -3.88 9.02 71.98 0.65 -3.23 16 27 C 0.12 3.32 5.71 86.36 0.49 3.81 16 28 C -0.08 -1.83 9.74 22.53 0.22 -1.61 16 29 C -0.12 -2.14 9.65 22.23 0.21 -1.92 16 30 H 0.06 0.53 7.38 -2.39 -0.02 0.51 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.82 7.87 -2.39 -0.02 0.80 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.61 7.37 -2.39 -0.02 0.59 16 37 H 0.15 1.60 7.08 -2.91 -0.02 1.57 16 38 H 0.14 2.24 7.08 -2.91 -0.02 2.21 16 39 H 0.11 2.22 4.56 -2.39 -0.01 2.21 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.36 15.97 5.36 -92.71 -0.50 15.48 16 44 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.04 1.51 7.36 -2.39 -0.02 1.50 16 47 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.09 2.42 7.02 -2.39 -0.02 2.40 16 50 H 0.12 2.75 8.06 -2.91 -0.02 2.72 16 51 H 0.15 1.85 7.94 -2.91 -0.02 1.82 16 Total: -1.00 -70.39 397.04 4.36 -66.04 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.35 Total: 30.18 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 5.68 Total: -7.93 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -3.51 Total: -114.78 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.06 Total: -20.74 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Total: -70.39 4.36 -66.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.207 kcal (2) G-P(sol) polarization free energy of solvation -70.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds