Wall clock time and date at job start Sat Apr 11 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46738 * 2 1 4 4 C 1.50698 * 109.46875 * 119.99901 * 2 1 3 5 5 C 1.38375 * 119.93249 * 299.99973 * 4 2 1 6 6 C 1.38340 * 120.29822 * 179.97438 * 5 4 2 7 7 C 1.37979 * 120.14176 * 0.02562 * 6 5 4 8 8 C 1.39560 * 119.85065 * 0.25753 * 7 6 5 9 9 C 1.47849 * 120.14392 * 179.72658 * 8 7 6 10 10 O 1.21551 * 120.00268 * 218.21299 * 9 8 7 11 11 N 1.34782 * 119.99867 * 38.21089 * 9 8 7 12 12 C 1.46919 * 120.62940 * 5.49027 * 11 9 8 13 13 C 1.53631 * 108.54141 * 126.37162 * 12 11 9 14 14 C 1.53040 * 109.24261 * 54.85435 * 13 12 11 15 15 H 1.08996 * 109.44629 * 58.52278 * 14 13 12 16 16 N 1.46491 * 109.45920 * 178.49248 * 14 13 12 17 17 C 1.36936 * 120.00036 * 275.06597 * 16 14 13 18 18 H 1.07997 * 120.00133 * 0.02562 * 17 16 14 19 19 C 1.38818 * 120.00121 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99901 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47493 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47030 * 119.99871 * 21 19 17 24 24 H 1.48497 * 109.46717 * 239.99325 * 21 19 17 25 25 C 1.53046 * 109.53676 * 298.51402 * 14 13 12 26 26 C 1.46924 * 120.62808 * 185.77594 * 11 9 8 27 27 H 1.09000 * 109.58826 * 113.79597 * 26 11 9 28 28 C 1.52996 * 109.58741 * 353.37002 * 26 11 9 29 29 C 1.37939 * 119.92610 * 119.98627 * 4 2 1 30 30 H 1.09001 * 109.47540 * 60.00142 * 1 2 3 31 31 H 1.09009 * 109.46801 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47561 * 299.99675 * 1 2 3 33 33 H 1.09000 * 109.47121 * 240.00327 * 2 1 3 34 34 H 1.08998 * 109.47076 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47417 * 300.00177 * 3 2 1 36 36 H 1.09008 * 109.46988 * 59.99970 * 3 2 1 37 37 H 1.08003 * 119.84922 * 359.97438 * 5 4 2 38 38 H 1.07992 * 119.92784 * 180.02562 * 6 5 4 39 39 H 1.07999 * 120.07334 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.58999 * 246.20495 * 12 11 9 41 41 H 1.09002 * 109.59045 * 6.62953 * 12 11 9 42 42 H 1.08994 * 109.63187 * 294.86145 * 13 12 11 43 43 H 1.08998 * 109.43146 * 174.72232 * 13 12 11 44 44 H 0.96996 * 120.00202 * 95.07176 * 16 14 13 45 45 H 0.97003 * 120.00113 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.49769 * 301.41407 * 25 14 13 47 47 H 1.08999 * 109.52018 * 181.33065 * 25 14 13 48 48 H 1.09001 * 109.47291 * 63.82178 * 28 26 11 49 49 H 1.09000 * 109.47478 * 183.81924 * 28 26 11 50 50 H 1.09002 * 109.47344 * 303.81986 * 28 26 11 51 51 H 1.08000 * 120.06857 * 0.03863 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6971 -0.2364 2.4866 6 6 2.1536 -0.8829 3.6212 7 6 2.9474 -2.0057 3.5068 8 6 3.2941 -2.4855 2.2430 9 6 4.1493 -3.6845 2.1129 10 8 4.9908 -3.7387 1.2375 11 7 3.9959 -4.7173 2.9651 12 6 2.9065 -4.7190 3.9508 13 6 2.1094 -6.0233 3.7958 14 6 3.0635 -7.2142 3.9119 15 1 3.5687 -7.1817 4.8772 16 7 2.3031 -8.4613 3.8007 17 6 1.7043 -8.9992 4.9085 18 1 1.7923 -8.5039 5.8641 19 6 0.9841 -10.1813 4.8033 20 7 0.8764 -10.7848 3.6386 21 14 0.1667 -10.9147 6.3144 22 1 0.4355 -10.0501 7.4914 23 1 -1.2986 -11.0046 6.0900 24 1 0.7136 -12.2727 6.5630 25 6 4.1026 -7.1489 2.7902 26 6 4.9188 -5.8600 2.9302 27 1 5.4963 -5.8917 3.8540 28 6 5.8642 -5.7194 1.7355 29 6 2.8250 -1.8320 1.1022 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6765 1.9564 0.8901 37 1 1.0763 0.6423 2.5815 38 1 1.8880 -0.5081 4.5985 39 1 3.3035 -2.5093 4.3934 40 1 3.3232 -4.6595 4.9563 41 1 2.2518 -3.8658 3.7734 42 1 1.6223 -6.0410 2.8209 43 1 1.3557 -6.0831 4.5809 44 1 2.2237 -8.9062 2.9424 45 1 0.3728 -11.6106 3.5649 46 1 3.5967 -7.1560 1.8248 47 1 4.7675 -8.0098 2.8590 48 1 6.4828 -4.8312 1.8642 49 1 6.5027 -6.6006 1.6716 50 1 5.2808 -5.6263 0.8194 51 1 3.0862 -2.2006 0.1213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044807708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:23 Heat of formation + Delta-G solvation = 5.552291 kcal Electronic energy + Delta-G solvation = -28786.453225 eV Core-core repulsion = 25071.955313 eV Total energy + Delta-G solvation = -3714.497912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82164 -39.29125 -37.31551 -35.73212 -34.50609 -32.86134 -31.92816 -31.08293 -29.93392 -29.16794 -27.43868 -27.04249 -24.69884 -23.94014 -23.38695 -22.79355 -21.69304 -20.84079 -19.90499 -18.83352 -17.18371 -16.92046 -16.55043 -16.12902 -15.46077 -15.19168 -14.92976 -14.82024 -14.16961 -14.05503 -13.96395 -13.79197 -13.66619 -13.59897 -13.21123 -13.02839 -12.75655 -12.56891 -12.42529 -12.33599 -12.10952 -11.88522 -11.75401 -11.55975 -11.48533 -11.30153 -11.05191 -10.94928 -10.92748 -10.81894 -10.74936 -10.43592 -10.21783 -9.83943 -9.72399 -9.16537 -9.00454 -8.94541 -8.77413 -8.38876 -6.98851 -5.79024 -3.08196 0.82358 1.16684 2.77270 3.04911 3.40932 3.46326 3.48841 3.63564 4.32849 4.41803 4.55333 4.57975 4.80868 4.85252 4.89430 4.98486 5.12128 5.16136 5.18824 5.25875 5.29114 5.31585 5.37271 5.49209 5.51684 5.52777 5.55826 5.64078 5.65375 5.70108 5.82913 5.83820 5.89425 5.93399 5.94352 6.02523 6.14681 6.17314 6.19226 6.26826 6.35787 6.40019 6.46259 6.50237 6.55683 6.70160 6.77495 6.91448 7.05023 7.54197 7.67233 8.26232 8.39158 9.50424 10.08176 10.42881 11.43608 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002800 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.984425 B = 9998.876032 C =10942.515136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.084 4.084 5 C -0.096 4.096 6 C -0.125 4.125 7 C -0.094 4.094 8 C -0.122 4.122 9 C 0.557 3.443 10 O -0.535 6.535 11 N -0.595 5.595 12 C 0.095 3.905 13 C -0.150 4.150 14 C 0.179 3.821 15 H 0.047 0.953 16 N -0.724 5.724 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.135 4.135 26 C 0.147 3.853 27 H 0.071 0.929 28 C -0.134 4.134 29 C -0.065 4.065 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.043 0.957 50 H 0.070 0.930 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 24.236 -3.767 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.085 4.085 5 C -0.114 4.114 6 C -0.143 4.143 7 C -0.113 4.113 8 C -0.125 4.125 9 C 0.346 3.654 10 O -0.414 6.414 11 N -0.328 5.328 12 C -0.028 4.028 13 C -0.191 4.191 14 C 0.069 3.931 15 H 0.065 0.935 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.174 4.174 26 C 0.044 3.956 27 H 0.089 0.911 28 C -0.191 4.191 29 C -0.083 4.083 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.089 0.911 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.781 24.103 -4.040 24.730 hybrid contribution -0.729 -0.723 0.706 1.246 sum 3.052 23.380 -3.335 23.813 Atomic orbital electron populations 1.21870 0.94134 1.02304 1.01906 1.20140 0.96082 0.96043 0.95322 1.21859 1.01347 0.94998 1.01894 1.19799 0.98040 0.95631 0.94983 1.21117 0.98974 0.99482 0.91866 1.21083 0.98647 0.95761 0.98805 1.21478 0.97019 0.96133 0.96648 1.20020 1.00805 0.97343 0.94333 1.18364 0.83292 0.82542 0.81252 1.90823 1.35606 1.80870 1.34102 1.48113 1.30372 1.19125 1.35147 1.22363 0.88667 1.00444 0.91289 1.22754 0.99593 0.94175 1.02569 1.20168 0.90455 0.86738 0.95778 0.93488 1.42437 1.60961 1.23265 1.09751 1.19270 1.24862 1.03940 0.88889 0.91135 1.24756 1.01297 0.98152 0.96786 1.69675 1.46102 1.19659 1.22582 0.86139 0.79030 0.78971 0.82175 1.20560 1.21895 1.21881 1.22298 0.98549 0.96059 1.00469 1.21344 0.89865 0.84839 0.99522 0.91063 1.22202 0.98658 1.00450 0.97820 1.21080 0.95256 0.93913 0.98090 0.92318 0.92297 0.92443 0.90248 0.92443 0.92323 0.92475 0.85898 0.85471 0.85012 0.91434 0.89305 0.92182 0.90669 0.78263 0.93544 0.91767 0.90596 0.91454 0.93837 0.91093 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.01 37.16 0.33 -0.69 16 2 C -0.06 -0.45 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -0.95 9.01 37.16 0.33 -0.62 16 4 C -0.08 -0.82 4.78 -104.68 -0.50 -1.32 16 5 C -0.10 -0.84 8.71 -39.49 -0.34 -1.19 16 6 C -0.12 -1.12 10.03 -39.64 -0.40 -1.51 16 7 C -0.09 -0.99 7.36 -39.18 -0.29 -1.28 16 8 C -0.12 -1.55 5.20 -104.97 -0.55 -2.09 16 9 C 0.56 8.31 7.27 -12.33 -0.09 8.22 16 10 O -0.54 -9.15 12.30 5.32 0.07 -9.09 16 11 N -0.60 -8.55 2.97 -166.06 -0.49 -9.04 16 12 C 0.10 1.27 4.86 -3.49 -0.02 1.25 16 13 C -0.15 -2.54 5.67 -26.38 -0.15 -2.69 16 14 C 0.18 3.43 2.73 -67.89 -0.19 3.25 16 15 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 16 N -0.72 -17.81 5.12 -53.39 -0.27 -18.08 16 17 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C -0.13 -2.28 4.84 -26.61 -0.13 -2.41 16 26 C 0.15 2.17 3.49 -67.60 -0.24 1.94 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 C -0.13 -1.97 7.59 37.16 0.28 -1.69 16 29 C -0.06 -0.76 9.25 -39.19 -0.36 -1.13 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 33 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.35 7.38 -51.92 -0.38 -0.04 16 37 H 0.12 0.82 7.08 -52.48 -0.37 0.45 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 1.25 6.34 -52.49 -0.33 0.92 16 40 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.09 1.07 4.60 -51.93 -0.24 0.83 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.07 1.03 6.75 -51.93 -0.35 0.68 16 49 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 51 H 0.13 1.54 7.93 -52.49 -0.42 1.12 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -31.11 394.29 -10.47 -41.58 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.59 Total: 8.68 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.82 Total: -9.80 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.04 Total: -54.40 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.11 -10.47 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044807708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.127 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds