Wall clock time and date at job start Sat Apr 11 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46738 * 2 1 4 4 C 1.50698 * 109.46875 * 119.99901 * 2 1 3 5 5 C 1.38375 * 119.93249 * 299.99973 * 4 2 1 6 6 C 1.38340 * 120.29822 * 179.97438 * 5 4 2 7 7 C 1.37979 * 120.14176 * 0.02562 * 6 5 4 8 8 C 1.39560 * 119.85065 * 0.25753 * 7 6 5 9 9 C 1.47849 * 120.14392 * 179.72658 * 8 7 6 10 10 O 1.21551 * 120.00268 * 218.21299 * 9 8 7 11 11 N 1.34782 * 119.99867 * 38.21089 * 9 8 7 12 12 C 1.46919 * 120.62940 * 5.49027 * 11 9 8 13 13 C 1.53631 * 108.54141 * 126.37162 * 12 11 9 14 14 C 1.53040 * 109.24261 * 54.85435 * 13 12 11 15 15 H 1.08996 * 109.44629 * 58.52278 * 14 13 12 16 16 N 1.46491 * 109.45920 * 178.49248 * 14 13 12 17 17 C 1.36936 * 120.00036 * 275.06597 * 16 14 13 18 18 H 1.07997 * 120.00133 * 0.02562 * 17 16 14 19 19 C 1.38818 * 120.00121 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99901 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47493 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47030 * 119.99871 * 21 19 17 24 24 H 1.48497 * 109.46717 * 239.99325 * 21 19 17 25 25 C 1.53046 * 109.53676 * 298.51402 * 14 13 12 26 26 C 1.46924 * 120.62808 * 185.77594 * 11 9 8 27 27 H 1.09000 * 109.58826 * 113.79597 * 26 11 9 28 28 C 1.52996 * 109.58741 * 353.37002 * 26 11 9 29 29 C 1.37939 * 119.92610 * 119.98627 * 4 2 1 30 30 H 1.09001 * 109.47540 * 60.00142 * 1 2 3 31 31 H 1.09009 * 109.46801 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47561 * 299.99675 * 1 2 3 33 33 H 1.09000 * 109.47121 * 240.00327 * 2 1 3 34 34 H 1.08998 * 109.47076 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47417 * 300.00177 * 3 2 1 36 36 H 1.09008 * 109.46988 * 59.99970 * 3 2 1 37 37 H 1.08003 * 119.84922 * 359.97438 * 5 4 2 38 38 H 1.07992 * 119.92784 * 180.02562 * 6 5 4 39 39 H 1.07999 * 120.07334 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.58999 * 246.20495 * 12 11 9 41 41 H 1.09002 * 109.59045 * 6.62953 * 12 11 9 42 42 H 1.08994 * 109.63187 * 294.86145 * 13 12 11 43 43 H 1.08998 * 109.43146 * 174.72232 * 13 12 11 44 44 H 0.96996 * 120.00202 * 95.07176 * 16 14 13 45 45 H 0.97003 * 120.00113 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.49769 * 301.41407 * 25 14 13 47 47 H 1.08999 * 109.52018 * 181.33065 * 25 14 13 48 48 H 1.09001 * 109.47291 * 63.82178 * 28 26 11 49 49 H 1.09000 * 109.47478 * 183.81924 * 28 26 11 50 50 H 1.09002 * 109.47344 * 303.81986 * 28 26 11 51 51 H 1.08000 * 120.06857 * 0.03863 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6971 -0.2364 2.4866 6 6 2.1536 -0.8829 3.6212 7 6 2.9474 -2.0057 3.5068 8 6 3.2941 -2.4855 2.2430 9 6 4.1493 -3.6845 2.1129 10 8 4.9908 -3.7387 1.2375 11 7 3.9959 -4.7173 2.9651 12 6 2.9065 -4.7190 3.9508 13 6 2.1094 -6.0233 3.7958 14 6 3.0635 -7.2142 3.9119 15 1 3.5687 -7.1817 4.8772 16 7 2.3031 -8.4613 3.8007 17 6 1.7043 -8.9992 4.9085 18 1 1.7923 -8.5039 5.8641 19 6 0.9841 -10.1813 4.8033 20 7 0.8764 -10.7848 3.6386 21 14 0.1667 -10.9147 6.3144 22 1 0.4355 -10.0501 7.4914 23 1 -1.2986 -11.0046 6.0900 24 1 0.7136 -12.2727 6.5630 25 6 4.1026 -7.1489 2.7902 26 6 4.9188 -5.8600 2.9302 27 1 5.4963 -5.8917 3.8540 28 6 5.8642 -5.7194 1.7355 29 6 2.8250 -1.8320 1.1022 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6765 1.9564 0.8901 37 1 1.0763 0.6423 2.5815 38 1 1.8880 -0.5081 4.5985 39 1 3.3035 -2.5093 4.3934 40 1 3.3232 -4.6595 4.9563 41 1 2.2518 -3.8658 3.7734 42 1 1.6223 -6.0410 2.8209 43 1 1.3557 -6.0831 4.5809 44 1 2.2237 -8.9062 2.9424 45 1 0.3728 -11.6106 3.5649 46 1 3.5967 -7.1560 1.8248 47 1 4.7675 -8.0098 2.8590 48 1 6.4828 -4.8312 1.8642 49 1 6.5027 -6.6006 1.6716 50 1 5.2808 -5.6263 0.8194 51 1 3.0862 -2.2006 0.1213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044807708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:23 Heat of formation + Delta-G solvation = -10.681671 kcal Electronic energy + Delta-G solvation = -28787.157182 eV Core-core repulsion = 25071.955313 eV Total energy + Delta-G solvation = -3715.201869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90550 -40.17849 -38.67524 -36.48582 -36.14362 -34.04681 -33.68565 -31.94323 -31.09435 -30.52268 -28.42371 -27.96278 -26.13508 -25.27777 -24.42218 -23.97478 -22.71854 -21.94439 -21.21285 -19.89821 -19.11646 -17.88296 -17.46124 -17.19974 -16.73399 -16.52108 -16.16726 -15.80216 -15.51887 -15.46113 -15.05411 -14.81386 -14.67621 -14.49986 -14.42985 -14.38650 -13.90939 -13.54588 -13.43745 -13.28687 -13.09498 -12.99544 -12.92264 -12.88560 -12.63214 -12.54269 -12.49688 -12.11523 -12.06883 -12.03811 -11.95245 -11.73347 -11.65645 -11.55703 -11.36464 -10.90844 -10.22198 -9.90792 -9.63965 -9.57633 -9.00801 -7.93159 -5.22225 -0.01861 0.39959 1.48340 1.48848 1.58799 1.69413 1.95768 2.56677 2.80368 3.38833 3.41918 3.68915 3.72282 3.82703 3.91201 4.00504 4.07179 4.09937 4.18191 4.25365 4.31090 4.32265 4.37335 4.48954 4.54047 4.55780 4.60518 4.68827 4.75674 4.79425 4.83272 4.86902 4.98484 5.00134 5.00914 5.04300 5.04886 5.12451 5.20147 5.22357 5.30010 5.37404 5.40749 5.43213 5.47535 5.49448 5.54009 5.64868 5.68393 5.97365 6.28207 6.39342 7.11325 7.34091 8.09318 8.32687 9.30852 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002800 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.984425 B = 9998.876032 C =10942.515136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.085 4.085 5 C -0.092 4.092 6 C -0.119 4.119 7 C -0.099 4.099 8 C -0.144 4.144 9 C 0.553 3.447 10 O -0.565 6.565 11 N -0.597 5.597 12 C 0.105 3.895 13 C -0.140 4.140 14 C 0.174 3.826 15 H 0.053 0.947 16 N -0.739 5.739 17 C -0.232 4.232 18 H 0.081 0.919 19 C -0.080 4.080 20 N -0.973 5.973 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.296 1.296 24 H -0.297 1.297 25 C -0.123 4.123 26 C 0.151 3.849 27 H 0.092 0.908 28 C -0.123 4.123 29 C -0.085 4.085 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.369 0.631 45 H 0.249 0.751 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.056 0.944 50 H 0.048 0.952 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 27.055 -1.515 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.197 4.197 4 C -0.085 4.085 5 C -0.110 4.110 6 C -0.137 4.137 7 C -0.117 4.117 8 C -0.147 4.147 9 C 0.343 3.657 10 O -0.446 6.446 11 N -0.329 5.329 12 C -0.017 4.017 13 C -0.181 4.181 14 C 0.066 3.934 15 H 0.071 0.929 16 N -0.377 5.377 17 C -0.364 4.364 18 H 0.099 0.901 19 C -0.272 4.272 20 N -0.625 5.625 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.224 1.224 24 H -0.224 1.224 25 C -0.163 4.163 26 C 0.048 3.952 27 H 0.110 0.890 28 C -0.180 4.180 29 C -0.104 4.104 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.168 0.832 38 H 0.176 0.824 39 H 0.163 0.837 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.057 0.943 43 H 0.087 0.913 44 H 0.200 0.800 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.352 26.980 -1.759 27.244 hybrid contribution -0.564 -1.500 -0.054 1.604 sum 2.788 25.480 -1.813 25.696 Atomic orbital electron populations 1.21854 0.93281 1.01755 1.03045 1.20183 0.96707 0.96625 0.94231 1.21836 1.00763 0.94103 1.03032 1.20019 0.97255 0.94840 0.96432 1.21483 0.98378 0.99934 0.91200 1.21463 0.97227 0.94693 1.00292 1.21647 0.97252 0.96889 0.95913 1.19935 1.01928 0.97094 0.95718 1.18787 0.83146 0.83211 0.80525 1.90802 1.36990 1.81652 1.35183 1.48154 1.30445 1.18877 1.35377 1.22391 0.88339 0.98689 0.92276 1.22539 0.99170 0.95254 1.01102 1.20409 0.90825 0.85427 0.96733 0.92876 1.42679 1.61501 1.25023 1.08533 1.19678 1.23413 1.03482 0.89791 0.90092 1.25579 1.02967 0.99179 0.99489 1.69841 1.47721 1.20111 1.24787 0.85091 0.77389 0.77928 0.79494 1.18552 1.22388 1.22425 1.22155 0.98012 0.97443 0.98648 1.21311 0.89680 0.83826 1.00390 0.89025 1.22044 0.98366 1.00819 0.96774 1.21106 0.96712 0.95206 0.97397 0.91192 0.93666 0.91321 0.91186 0.93347 0.91204 0.91339 0.83177 0.82359 0.83743 0.88747 0.87488 0.94319 0.91318 0.79972 0.94218 0.93616 0.90924 0.91826 0.92537 0.93343 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.01 71.98 0.65 -1.10 16 2 C -0.06 -0.85 3.09 -11.54 -0.04 -0.89 16 3 C -0.14 -1.57 9.01 71.98 0.65 -0.93 16 4 C -0.09 -1.55 4.78 -19.90 -0.10 -1.64 16 5 C -0.09 -1.32 8.71 22.33 0.19 -1.12 16 6 C -0.12 -1.69 10.03 22.23 0.22 -1.46 16 7 C -0.10 -1.83 7.36 22.53 0.17 -1.66 16 8 C -0.14 -3.56 5.20 -20.09 -0.10 -3.66 16 9 C 0.55 16.51 7.27 86.79 0.63 17.14 16 10 O -0.57 -19.91 12.30 -3.87 -0.05 -19.95 16 11 N -0.60 -16.61 2.97 -797.57 -2.37 -18.98 16 12 C 0.11 2.58 4.86 86.51 0.42 3.00 16 13 C -0.14 -4.65 5.67 30.82 0.17 -4.48 16 14 C 0.17 6.63 2.73 45.02 0.12 6.75 16 15 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 16 N -0.74 -36.81 5.12 -322.82 -1.65 -38.47 16 17 C -0.23 -12.53 9.93 84.04 0.83 -11.70 16 18 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 19 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 20 N -0.97 -59.94 13.06 21.65 0.28 -59.66 16 21 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 25 C -0.12 -4.21 4.84 30.67 0.15 -4.06 16 26 C 0.15 4.34 3.49 44.97 0.16 4.50 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 C -0.12 -3.63 7.59 71.98 0.55 -3.08 16 29 C -0.09 -2.03 9.25 22.53 0.21 -1.83 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.07 0.69 7.38 -2.39 -0.02 0.67 16 33 H 0.07 1.12 7.87 -2.39 -0.02 1.10 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.61 7.38 -2.38 -0.02 0.60 16 37 H 0.15 1.33 7.08 -2.91 -0.02 1.31 16 38 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.14 2.24 6.34 -2.91 -0.02 2.23 16 40 H 0.09 1.88 8.09 -2.39 -0.02 1.87 16 41 H 0.11 2.31 4.60 -2.39 -0.01 2.30 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.37 20.29 7.80 -92.71 -0.72 19.57 16 45 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.06 1.94 6.75 -2.39 -0.02 1.92 16 49 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.05 1.64 6.75 -2.39 -0.02 1.63 16 51 H 0.11 2.92 7.93 -2.91 -0.02 2.90 16 Total: -1.00 -68.98 394.29 3.79 -65.19 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.19 Total: 34.55 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.35 Total: -10.32 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -3.74 Total: -117.10 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.98 3.79 -65.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044807708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.513 kcal (2) G-P(sol) polarization free energy of solvation -68.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds