Wall clock time and date at job start Sat Apr 11 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 C 1.50694 * 109.47057 * 239.99935 * 2 1 3 5 5 C 1.38355 * 119.85597 * 59.72538 * 4 2 1 6 6 C 1.37960 * 120.14424 * 179.76524 * 5 4 2 7 7 C 1.39578 * 119.85609 * 0.51024 * 6 5 4 8 8 C 1.47835 * 120.14758 * 179.72530 * 7 6 5 9 9 O 1.21554 * 120.00609 * 146.16925 * 8 7 6 10 10 N 1.34783 * 119.99995 * 326.16310 * 8 7 6 11 11 C 1.46923 * 120.62917 * 2.97572 * 10 8 7 12 12 C 1.53191 * 108.77399 * 233.58279 * 11 10 8 13 13 C 1.53041 * 109.31046 * 305.35984 * 12 11 10 14 14 H 1.09000 * 109.46291 * 301.36190 * 13 12 11 15 15 N 1.46503 * 109.45849 * 181.38570 * 13 12 11 16 16 C 1.36938 * 119.99945 * 85.00461 * 15 13 12 17 17 H 1.08002 * 119.99421 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00258 * 179.97438 * 16 15 13 19 19 N 1.31617 * 120.00341 * 179.97438 * 18 16 15 20 20 Si 1.86809 * 119.99882 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47034 * 89.99756 * 20 18 16 22 22 H 1.48493 * 109.47037 * 209.99879 * 20 18 16 23 23 H 1.48503 * 109.47086 * 329.99992 * 20 18 16 24 24 C 1.53046 * 109.53678 * 61.36895 * 13 12 11 25 25 C 1.46927 * 120.62965 * 182.68835 * 10 8 7 26 26 H 1.08997 * 109.58416 * 246.20528 * 25 10 8 27 27 C 1.52996 * 109.58775 * 6.63140 * 25 10 8 28 28 C 1.39583 * 119.70871 * 359.74451 * 7 6 5 29 29 C 1.37960 * 119.84983 * 0.02562 * 28 7 6 30 30 H 1.08996 * 109.46808 * 59.99726 * 1 2 3 31 31 H 1.08999 * 109.46859 * 300.00584 * 1 2 3 32 32 H 1.08993 * 109.46954 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46770 * 119.99624 * 2 1 3 34 34 H 1.08999 * 109.47631 * 59.99888 * 3 2 1 35 35 H 1.08994 * 109.47489 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47133 * 300.00044 * 3 2 1 37 37 H 1.07996 * 119.92626 * 359.97438 * 5 4 2 38 38 H 1.08009 * 120.07476 * 180.23012 * 6 5 4 39 39 H 1.09000 * 109.58389 * 353.36677 * 11 10 8 40 40 H 1.09005 * 109.58818 * 113.65204 * 11 10 8 41 41 H 1.08999 * 109.49986 * 65.31321 * 12 11 10 42 42 H 1.09003 * 109.49343 * 185.41310 * 12 11 10 43 43 H 0.96992 * 120.00112 * 265.00169 * 15 13 12 44 44 H 0.96998 * 120.00293 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.49313 * 58.58112 * 24 13 12 46 46 H 1.08994 * 109.49974 * 178.64826 * 24 13 12 47 47 H 1.09004 * 109.46851 * 53.20875 * 27 25 10 48 48 H 1.09006 * 109.46945 * 173.20179 * 27 25 10 49 49 H 1.08996 * 109.47463 * 293.20383 * 27 25 10 50 50 H 1.07992 * 120.07106 * 179.97438 * 28 7 6 51 51 H 1.08002 * 119.92438 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.6916 -0.2385 -2.4855 6 6 2.1521 -0.8814 -3.6160 7 6 2.9547 -2.0165 -3.4914 8 6 3.4467 -2.7140 -4.6985 9 8 4.5400 -3.2452 -4.6904 10 7 2.6830 -2.7610 -5.8080 11 6 1.3878 -2.0689 -5.8552 12 6 0.3081 -3.0713 -6.2746 13 6 0.7159 -3.7321 -7.5934 14 1 0.8477 -2.9664 -8.3578 15 7 -0.3302 -4.6674 -8.0146 16 6 -1.4080 -4.2136 -8.7270 17 1 -1.4866 -3.1662 -8.9786 18 6 -2.3989 -5.0997 -9.1265 19 7 -3.4351 -4.6635 -9.8108 20 14 -2.2624 -6.9114 -8.6918 21 1 -2.9177 -7.1568 -7.3819 22 1 -2.9311 -7.7236 -9.7397 23 1 -0.8299 -7.2938 -8.6079 24 6 2.0308 -4.4911 -7.4004 25 6 3.1326 -3.5001 -6.9956 26 1 3.3180 -2.8021 -7.8119 27 6 4.4173 -4.2639 -6.6683 28 6 3.2904 -2.4905 -2.2222 29 6 2.8272 -1.8354 -1.0999 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.6768 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.0665 0.6371 -2.5805 38 1 1.8884 -0.5098 -4.5953 39 1 1.1515 -1.6684 -4.8693 40 1 1.4346 -1.2549 -6.5786 41 1 0.2005 -3.8341 -5.5035 42 1 -0.6403 -2.5504 -6.4067 43 1 -0.2593 -5.6080 -7.7889 44 1 -4.1273 -5.2828 -10.0903 45 1 1.9069 -5.2405 -6.6186 46 1 2.3083 -4.9813 -8.3335 47 1 4.2598 -4.8760 -5.7802 48 1 4.6829 -4.9050 -7.5090 49 1 5.2242 -3.5551 -6.4827 50 1 3.9107 -3.3685 -2.1191 51 1 3.0859 -2.2014 -0.1172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044831021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:56 Heat of formation + Delta-G solvation = 22.814158 kcal Electronic energy + Delta-G solvation = -28852.864779 eV Core-core repulsion = 25139.115398 eV Total energy + Delta-G solvation = -3713.749381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.93067 -39.33843 -37.46131 -35.73370 -34.70169 -32.98858 -31.96930 -31.11311 -30.17255 -29.58441 -27.47794 -27.22033 -24.80758 -24.12954 -23.41894 -22.26030 -21.86102 -20.47222 -20.12901 -19.44273 -17.61879 -17.09673 -16.64158 -16.03530 -15.41165 -15.15683 -14.89381 -14.77941 -14.28565 -14.20244 -14.04587 -13.88508 -13.79115 -13.60046 -13.25178 -12.98233 -12.79035 -12.70063 -12.56149 -12.39751 -12.16390 -12.06616 -11.86692 -11.69388 -11.50151 -11.30285 -11.10526 -11.04368 -10.98634 -10.87084 -10.79632 -10.44488 -10.30325 -9.92749 -9.62492 -9.16115 -9.11443 -8.94357 -8.78497 -8.45502 -7.30592 -5.80445 -3.16152 0.75896 1.15964 2.74257 3.00120 3.35588 3.39193 3.43656 3.62172 4.26646 4.42839 4.48400 4.56436 4.69461 4.81405 4.84057 4.96881 4.99600 5.07297 5.13564 5.18436 5.22612 5.28941 5.29796 5.40793 5.49076 5.50087 5.51831 5.55015 5.58013 5.69191 5.73454 5.78675 5.82046 5.85847 5.90437 5.91402 6.02909 6.05676 6.11223 6.14979 6.28389 6.33726 6.35248 6.37830 6.45509 6.65458 6.69155 6.80813 6.93862 7.48763 7.95089 8.22058 8.38720 9.16960 9.89915 10.09830 11.37795 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012726 B = 0.003092 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.695870 B = 9052.222480 C =10462.518753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.057 4.057 5 C -0.123 4.123 6 C -0.098 4.098 7 C -0.131 4.131 8 C 0.557 3.443 9 O -0.537 6.537 10 N -0.595 5.595 11 C 0.074 3.926 12 C -0.150 4.150 13 C 0.183 3.817 14 H 0.056 0.944 15 N -0.748 5.748 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.138 4.138 25 C 0.147 3.853 26 H 0.074 0.926 27 C -0.135 4.135 28 C -0.062 4.062 29 C -0.126 4.126 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.130 0.870 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.206 10.593 19.039 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.202 4.202 4 C -0.058 4.058 5 C -0.141 4.141 6 C -0.116 4.116 7 C -0.134 4.134 8 C 0.346 3.654 9 O -0.416 6.416 10 N -0.327 5.327 11 C -0.048 4.048 12 C -0.191 4.191 13 C 0.073 3.927 14 H 0.074 0.926 15 N -0.390 5.390 16 C -0.373 4.373 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.177 4.177 25 C 0.045 3.955 26 H 0.092 0.908 27 C -0.192 4.192 28 C -0.081 4.081 29 C -0.144 4.144 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.163 0.837 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.193 0.807 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.091 0.909 50 H 0.148 0.852 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.589 10.433 18.853 25.475 hybrid contribution -0.296 -1.389 0.175 1.431 sum 13.294 9.044 19.028 24.912 Atomic orbital electron populations 1.21874 0.93958 1.02333 1.02156 1.20191 0.96246 0.96140 0.95242 1.21863 1.01261 0.94956 1.02112 1.20063 0.95968 0.94879 0.94844 1.20944 1.01107 1.00418 0.91602 1.21779 0.95277 0.94821 0.99750 1.20004 1.01390 0.98025 0.93993 1.18339 0.84549 0.79859 0.82635 1.90813 1.20892 1.46656 1.83280 1.48113 1.19890 1.51288 1.13408 1.22804 0.82671 0.95780 1.03533 1.22630 0.97922 0.98449 1.00104 1.20152 0.86844 0.92177 0.93479 0.92595 1.42795 1.23699 1.05922 1.66578 1.19059 0.96521 0.95653 1.26105 0.89183 1.24665 0.96805 0.97479 1.00117 1.69695 1.11519 1.34139 1.42780 0.86564 0.77347 0.86865 0.77840 1.21135 1.21747 1.20314 1.22415 0.95292 0.98181 1.01836 1.21404 0.94689 0.93220 0.86225 0.90835 1.22183 0.96137 1.00362 1.00494 1.21158 0.97026 0.99125 0.90786 1.21011 0.98977 0.95883 0.98557 0.92183 0.92281 0.92327 0.90364 0.92291 0.92494 0.92262 0.85470 0.83656 0.87517 0.91071 0.92285 0.90147 0.80657 0.93042 0.91905 0.90548 0.91566 0.93800 0.90933 0.85190 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.00 37.16 0.33 -0.62 16 2 C -0.06 -0.40 3.09 -91.77 -0.28 -0.69 16 3 C -0.14 -0.87 9.01 37.16 0.33 -0.53 16 4 C -0.06 -0.50 4.79 -104.54 -0.50 -1.00 16 5 C -0.12 -1.11 8.69 -39.64 -0.34 -1.45 16 6 C -0.10 -1.01 7.44 -39.18 -0.29 -1.31 16 7 C -0.13 -1.61 5.52 -104.97 -0.58 -2.19 16 8 C 0.56 8.03 7.29 -12.33 -0.09 7.94 16 9 O -0.54 -8.87 12.29 5.32 0.07 -8.80 16 10 N -0.59 -8.20 2.97 -166.08 -0.49 -8.69 16 11 C 0.07 0.94 4.95 -3.71 -0.02 0.92 16 12 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 13 C 0.18 3.35 2.73 -67.88 -0.19 3.17 16 14 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 15 N -0.75 -17.22 4.92 -53.38 -0.26 -17.49 16 16 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 17 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 20 Si 0.88 22.00 27.74 -169.99 -4.71 17.28 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 24 C -0.14 -2.19 4.86 -26.38 -0.13 -2.32 16 25 C 0.15 2.08 3.51 -67.38 -0.24 1.85 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 C -0.13 -1.89 7.61 37.16 0.28 -1.61 16 28 C -0.06 -0.70 9.61 -39.18 -0.38 -1.08 16 29 C -0.13 -1.18 9.65 -39.64 -0.38 -1.57 16 30 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.35 7.39 -51.93 -0.38 -0.03 16 37 H 0.13 0.91 7.08 -52.49 -0.37 0.54 16 38 H 0.15 1.34 5.37 -52.48 -0.28 1.05 16 39 H 0.11 1.19 3.51 -53.36 -0.19 1.01 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.36 8.32 5.66 -40.82 -0.23 8.09 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.07 1.03 6.79 -51.93 -0.35 0.67 16 48 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 1.07 6.70 -51.93 -0.35 0.72 16 50 H 0.13 1.45 7.98 -52.49 -0.42 1.03 16 51 H 0.13 0.91 7.94 -52.49 -0.42 0.50 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -31.95 389.59 -10.07 -42.02 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.44 Total: 7.80 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.87 Total: -9.83 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.02 Total: -54.34 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.95 -10.07 -42.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.837 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds