Wall clock time and date at job start Sat Apr 11 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46781 * 2 1 4 4 C 1.52996 * 109.47022 * 119.99601 * 2 1 3 5 5 C 1.50702 * 109.47159 * 294.99939 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.47487 * 127.03512 * 180.27513 * 7 5 4 9 9 C 1.54002 * 107.08545 * 154.52018 * 8 7 5 10 10 H 1.09001 * 110.32996 * 120.19805 * 9 8 7 11 11 C 1.53006 * 110.32728 * 242.31314 * 9 8 7 12 12 N 1.46494 * 109.46906 * 293.54602 * 11 9 8 13 13 C 1.36938 * 119.99720 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00170 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99806 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00012 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99952 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47180 * 90.00104 * 17 15 13 19 19 H 1.48505 * 109.46949 * 210.00042 * 17 15 13 20 20 H 1.48500 * 109.47401 * 329.99601 * 17 15 13 21 21 C 1.54618 * 105.04402 * 1.30480 * 9 8 7 22 22 H 1.08996 * 110.74244 * 263.51074 * 21 9 8 23 23 C 1.53000 * 110.73695 * 140.36536 * 21 9 8 24 24 C 1.48122 * 127.03502 * 359.96635 * 7 5 4 25 25 C 1.50695 * 109.47082 * 239.99745 * 2 1 3 26 26 C 1.38235 * 119.99964 * 299.72196 * 25 2 1 27 27 C 1.38234 * 119.99981 * 179.80888 * 26 25 2 28 28 C 1.38241 * 119.99737 * 0.40236 * 27 26 25 29 29 C 1.38229 * 120.00296 * 359.85451 * 28 27 26 30 30 C 1.38236 * 120.00001 * 359.95370 * 29 28 27 31 31 H 1.09005 * 109.47435 * 300.00109 * 1 2 3 32 32 H 1.09001 * 109.47522 * 60.00580 * 1 2 3 33 33 H 1.09007 * 109.47141 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47066 * 175.00142 * 4 2 1 35 35 H 1.08994 * 109.47405 * 54.99972 * 4 2 1 36 36 H 1.09001 * 109.91358 * 273.88464 * 8 7 5 37 37 H 1.09001 * 109.91316 * 35.15643 * 8 7 5 38 38 H 1.09000 * 109.46609 * 53.54757 * 11 9 8 39 39 H 1.08998 * 109.47068 * 173.54526 * 11 9 8 40 40 H 0.97004 * 120.00179 * 0.02562 * 12 11 9 41 41 H 0.96996 * 120.00589 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.47286 * 60.00582 * 23 21 9 43 43 H 1.09005 * 109.47101 * 180.02562 * 23 21 9 44 44 H 1.09002 * 109.47344 * 300.00323 * 23 21 9 45 45 H 1.09004 * 110.65797 * 337.76678 * 24 7 5 46 46 H 1.09002 * 110.66353 * 100.88140 * 24 7 5 47 47 H 1.07994 * 120.00071 * 0.02562 * 26 25 2 48 48 H 1.08000 * 120.00703 * 180.23060 * 27 26 25 49 49 H 1.08007 * 119.99608 * 179.83268 * 28 27 26 50 50 H 1.07997 * 120.00534 * 179.97438 * 29 28 27 51 51 H 1.08003 * 120.00143 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0109 1.0872 2.3633 7 7 1.9800 -0.3943 3.7004 8 6 1.6680 0.2351 4.9973 9 6 1.6617 -0.8851 6.0540 10 1 2.4087 -0.6853 6.8222 11 6 0.2734 -1.0133 6.6845 12 7 -0.0255 0.1951 7.4568 13 6 -1.2211 0.3089 8.1146 14 1 -1.9438 -0.4920 8.0637 15 6 -1.5042 1.4537 8.8469 16 7 -2.6531 1.5628 9.4796 17 14 -0.2544 2.8392 8.9345 18 1 -0.4933 3.7925 7.8212 19 1 -0.3920 3.5487 10.2318 20 1 1.1157 2.2780 8.8202 21 6 2.0217 -2.1722 5.2766 22 1 1.1213 -2.7200 4.9987 23 6 2.9598 -3.0576 6.0994 24 6 2.7364 -1.6274 4.0186 25 6 2.0323 -0.7104 -1.2304 26 6 1.7031 -2.0356 -1.4462 27 6 2.1606 -2.6861 -2.5768 28 6 2.9542 -2.0139 -3.4875 29 6 3.2878 -0.6904 -3.2691 30 6 2.8270 -0.0386 -2.1404 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1263 -0.7994 1.2056 35 1 1.6054 -1.7196 1.2953 36 1 2.4301 0.9742 5.2442 37 1 0.6876 0.7096 4.9533 38 1 -0.4723 -1.1363 5.8990 39 1 0.2527 -1.8806 7.3443 40 1 0.6232 0.9149 7.5017 41 1 -2.8512 2.3629 9.9910 42 1 2.4710 -3.3357 7.0331 43 1 3.2003 -3.9572 5.5328 44 1 3.8768 -2.5105 6.3183 45 1 2.6686 -2.3425 3.1986 46 1 3.7775 -1.3935 4.2411 47 1 1.0856 -2.5615 -0.7332 48 1 1.9004 -3.7203 -2.7474 49 1 3.3139 -2.5230 -4.3695 50 1 3.9081 -0.1653 -3.9803 51 1 3.0873 0.9956 -1.9699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106950979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:52 Heat of formation + Delta-G solvation = -9.386103 kcal Electronic energy + Delta-G solvation = -28134.342749 eV Core-core repulsion = 24419.197060 eV Total energy + Delta-G solvation = -3715.145689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.42922 -39.58677 -38.11990 -35.17732 -34.81332 -32.91394 -31.56498 -31.20147 -30.30676 -29.49128 -28.01923 -26.38519 -25.51173 -23.78425 -22.97561 -22.73107 -21.12766 -20.58687 -19.85205 -19.06363 -17.74604 -17.38004 -16.63476 -16.16615 -15.97294 -15.30325 -15.06546 -14.72829 -14.52580 -14.29310 -14.05787 -13.85822 -13.70513 -13.48546 -13.24273 -13.09949 -12.84372 -12.82570 -12.58416 -12.53049 -12.12560 -12.07575 -11.78577 -11.57737 -11.55225 -11.44405 -11.37583 -11.03911 -10.95861 -10.86582 -10.68023 -10.55472 -10.29900 -10.08801 -9.69482 -9.56894 -9.20440 -8.97623 -8.88842 -8.62648 -7.22454 -5.75045 -3.10835 1.06894 1.11610 2.65536 2.94743 3.39075 3.42962 3.47670 3.50811 4.25304 4.45266 4.47338 4.59093 4.61377 4.70551 4.73346 4.75692 4.85084 4.87164 4.97573 5.17412 5.22111 5.23299 5.25829 5.31964 5.35627 5.42618 5.44214 5.53822 5.54968 5.63249 5.65671 5.72037 5.74916 5.81083 5.87154 5.88644 5.98681 6.02481 6.08952 6.13362 6.17884 6.22857 6.27889 6.31046 6.36939 6.42503 6.62312 6.72301 6.75735 7.57885 8.00313 8.20488 8.43670 9.22369 9.94779 10.13980 11.43369 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.002469 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.041525 B =11337.523980 C =12142.091970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.036 4.036 3 H 0.086 0.914 4 C -0.127 4.127 5 C 0.529 3.471 6 O -0.534 6.534 7 N -0.621 5.621 8 C 0.107 3.893 9 C -0.108 4.108 10 H 0.085 0.915 11 C 0.168 3.832 12 N -0.756 5.756 13 C -0.244 4.244 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.934 5.934 17 Si 0.883 3.117 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.099 4.099 22 H 0.086 0.914 23 C -0.140 4.140 24 C 0.103 3.897 25 C -0.073 4.073 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.127 4.127 29 C -0.119 4.119 30 C -0.116 4.116 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.560 -11.080 -23.727 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.055 4.055 3 H 0.105 0.895 4 C -0.167 4.167 5 C 0.318 3.682 6 O -0.410 6.410 7 N -0.355 5.355 8 C -0.015 4.015 9 C -0.127 4.127 10 H 0.104 0.896 11 C 0.040 3.960 12 N -0.401 5.401 13 C -0.374 4.374 14 H 0.108 0.892 15 C -0.191 4.191 16 N -0.582 5.582 17 Si 0.714 3.286 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.119 4.119 22 H 0.104 0.896 23 C -0.198 4.198 24 C -0.020 4.020 25 C -0.073 4.073 26 C -0.133 4.133 27 C -0.137 4.137 28 C -0.146 4.146 29 C -0.137 4.137 30 C -0.134 4.134 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.953 -10.525 -23.798 30.522 hybrid contribution 0.879 0.984 0.200 1.334 sum 16.831 -9.542 -23.598 30.516 Atomic orbital electron populations 1.21975 0.93408 1.01827 1.03500 1.19903 0.96992 0.99113 0.89509 0.89541 1.21714 1.02762 1.00131 0.92055 1.20254 0.79193 0.85632 0.83134 1.90708 1.39826 1.24760 1.85751 1.48858 1.55386 1.25531 1.05701 1.22184 1.02630 0.95501 0.81182 1.22445 1.00037 0.93565 0.96657 0.89637 1.20669 0.91346 0.90354 0.93604 1.42718 1.19303 1.17513 1.60611 1.19035 0.92748 1.02834 1.22756 0.89249 1.24672 0.96809 0.97915 0.99721 1.69697 1.22664 1.28839 1.36986 0.86563 0.81463 0.83299 0.77320 1.20941 1.21715 1.20357 1.22216 0.99214 0.96013 0.94469 0.89586 1.21734 0.98975 0.98912 1.00151 1.22580 0.95617 0.86160 0.97634 1.19933 0.97015 0.94178 0.96163 1.21038 1.00102 0.94359 0.97763 1.21153 0.98063 0.99908 0.94572 1.21143 0.98985 0.94935 0.99490 1.21143 1.00079 0.94970 0.97534 1.21123 0.97875 0.99994 0.94453 0.89958 0.92732 0.93080 0.89042 0.88869 0.92085 0.89180 0.95438 0.95208 0.80684 0.93061 0.91651 0.92570 0.92485 0.90358 0.90915 0.86055 0.86150 0.86308 0.86191 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.75 37.16 0.33 -1.35 16 2 C -0.04 -0.37 2.21 -91.78 -0.20 -0.57 16 3 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 4 C -0.13 -1.22 3.85 -27.88 -0.11 -1.33 16 5 C 0.53 7.27 7.61 -10.98 -0.08 7.19 16 6 O -0.53 -9.48 14.30 5.55 0.08 -9.40 16 7 N -0.62 -8.12 3.29 -169.97 -0.56 -8.68 16 8 C 0.11 1.66 6.31 -2.98 -0.02 1.64 16 9 C -0.11 -1.54 2.64 -89.24 -0.24 -1.78 16 10 H 0.09 1.20 7.85 -51.93 -0.41 0.79 16 11 C 0.17 3.16 5.35 -4.04 -0.02 3.14 16 12 N -0.76 -17.99 5.13 -59.91 -0.31 -18.30 16 13 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 14 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 15 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 16 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 17 Si 0.88 22.54 27.74 -169.99 -4.71 17.82 16 18 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 20 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 21 C -0.10 -1.06 3.19 -88.93 -0.28 -1.34 16 22 H 0.09 0.95 7.87 -51.93 -0.41 0.54 16 23 C -0.14 -1.22 9.17 37.16 0.34 -0.88 16 24 C 0.10 0.97 6.39 -2.31 -0.01 0.96 16 25 C -0.07 -0.66 4.78 -104.62 -0.50 -1.16 16 26 C -0.11 -0.95 8.76 -39.58 -0.35 -1.30 16 27 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 28 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 29 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 30 C -0.12 -1.00 9.67 -39.58 -0.38 -1.38 16 31 H 0.08 1.15 5.95 -51.93 -0.31 0.84 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.51 7.41 -51.93 -0.38 0.12 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.76 7.31 -51.93 -0.38 0.38 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.72 7.48 -51.93 -0.39 1.33 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.36 8.39 5.37 -40.82 -0.22 8.17 16 41 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.47 8.11 -51.93 -0.42 0.04 16 45 H 0.08 0.56 7.23 -51.93 -0.38 0.19 16 46 H 0.07 0.60 8.02 -51.93 -0.42 0.19 16 47 H 0.12 0.88 7.16 -52.49 -0.38 0.50 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 50 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 51 H 0.12 0.92 7.95 -52.48 -0.42 0.50 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -34.32 402.88 -10.36 -44.67 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.72 Total: 6.03 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.98 Total: -9.20 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.09 Total: -55.99 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.32 -10.36 -44.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106950979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.285 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds