Wall clock time and date at job start Sat Apr 11 2020 02:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46864 * 2 1 4 4 C 1.53005 * 109.47047 * 120.00253 * 2 1 3 5 5 C 1.53003 * 109.46863 * 295.00023 * 4 2 1 6 6 C 1.52997 * 109.46953 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.38236 * 119.99735 * 269.72535 * 7 6 5 9 9 C 1.38232 * 119.99984 * 180.32563 * 8 7 6 10 10 C 1.38230 * 119.99842 * 359.92301 * 9 8 7 11 11 C 1.38236 * 120.00435 * 0.07096 * 10 9 8 12 12 C 1.38228 * 120.00014 * 90.00019 * 7 6 5 13 13 C 1.50702 * 109.46799 * 239.99960 * 2 1 3 14 14 O 1.21274 * 120.00433 * 332.43241 * 13 2 1 15 15 N 1.34772 * 119.99645 * 152.43792 * 13 2 1 16 16 C 1.46965 * 120.59389 * 4.54063 * 15 13 2 17 17 C 1.53812 * 108.39818 * 124.76245 * 16 15 13 18 18 N 1.46957 * 108.58272 * 49.63645 * 17 16 15 19 19 C 1.36936 * 120.59774 * 124.62639 * 18 17 16 20 20 H 1.08004 * 120.00239 * 208.32995 * 19 18 17 21 21 C 1.38815 * 119.99790 * 28.32586 * 19 18 17 22 22 N 1.31627 * 119.99764 * 218.37688 * 21 19 18 23 23 Si 1.86799 * 120.00215 * 38.37782 * 21 19 18 24 24 H 1.48494 * 109.47101 * 95.16228 * 23 21 19 25 25 H 1.48494 * 109.47071 * 215.16759 * 23 21 19 26 26 H 1.48500 * 109.46940 * 335.16438 * 23 21 19 27 27 C 1.46965 * 118.81098 * 304.65064 * 18 17 16 28 28 C 1.46973 * 120.59615 * 184.82393 * 15 13 2 29 29 H 1.09003 * 109.47239 * 186.11502 * 1 2 3 30 30 H 1.08996 * 109.47537 * 306.11970 * 1 2 3 31 31 H 1.09007 * 109.47470 * 66.12000 * 1 2 3 32 32 H 1.09000 * 109.46992 * 174.99994 * 4 2 1 33 33 H 1.08999 * 109.46967 * 54.99949 * 4 2 1 34 34 H 1.09000 * 109.47340 * 60.00184 * 5 4 2 35 35 H 1.09000 * 109.46790 * 300.00345 * 5 4 2 36 36 H 1.09000 * 109.47071 * 59.99868 * 6 5 4 37 37 H 1.09006 * 109.47162 * 299.99886 * 6 5 4 38 38 H 1.08001 * 119.99776 * 0.27629 * 8 7 6 39 39 H 1.07994 * 120.00103 * 179.97438 * 9 8 7 40 40 H 1.08003 * 120.00106 * 180.02562 * 10 9 8 41 41 H 1.08003 * 120.00557 * 179.97438 * 11 10 9 42 42 H 1.08006 * 120.00362 * 359.71956 * 12 7 6 43 43 H 1.09001 * 109.61323 * 244.53894 * 16 15 13 44 44 H 1.09002 * 109.61328 * 5.05482 * 16 15 13 45 45 H 1.09002 * 109.74134 * 289.84502 * 17 16 15 46 46 H 1.09000 * 109.53459 * 169.30409 * 17 16 15 47 47 H 0.96998 * 119.99612 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.60796 * 295.47883 * 27 18 17 49 49 H 1.09004 * 109.61264 * 174.96789 * 27 18 17 50 50 H 1.08995 * 109.60382 * 354.94022 * 28 15 13 51 51 H 1.08992 * 109.61022 * 115.45728 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 0.0688 2.4953 6 6 2.1457 -0.6521 3.7445 7 6 1.7465 0.1258 4.9719 8 6 2.5884 1.0984 5.4780 9 6 2.2253 1.8074 6.6077 10 6 1.0195 1.5448 7.2305 11 6 0.1775 0.5723 6.7245 12 6 0.5409 -0.1371 5.5951 13 6 2.0323 -0.7104 -1.2305 14 8 1.3566 -1.5724 -1.7514 15 7 3.2324 -0.3879 -1.7520 16 6 4.1051 0.5826 -1.0765 17 6 5.4713 -0.0807 -0.8325 18 7 5.9281 -0.6885 -2.0901 19 6 7.1471 -0.3602 -2.6205 20 1 7.3033 -0.4123 -3.6879 21 6 8.1820 0.0398 -1.7863 22 7 8.9976 1.0013 -2.1641 23 14 8.4172 -0.7866 -0.1276 24 1 9.4188 -1.8755 -0.2547 25 1 8.8958 0.2135 0.8602 26 1 7.1238 -1.3547 0.3302 27 6 5.0529 -1.6548 -2.7685 28 6 3.6892 -0.9958 -3.0098 29 1 -0.3634 -1.0218 0.1095 30 1 -0.3634 0.6057 0.8301 31 1 -0.3634 0.4160 -0.9397 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7199 1.2951 34 1 0.5489 0.1471 2.5390 35 1 2.0698 1.0674 2.4494 36 1 3.2320 -0.7299 3.7006 37 1 1.7114 -1.6508 3.7906 38 1 3.5303 1.3038 4.9910 39 1 2.8833 2.5669 7.0033 40 1 0.7356 2.0989 8.1130 41 1 -0.7645 0.3669 7.2113 42 1 -0.1170 -0.8969 5.1997 43 1 4.2304 1.4629 -1.7070 44 1 3.6619 0.8720 -0.1237 45 1 5.3751 -0.8512 -0.0675 46 1 6.1894 0.6725 -0.5082 47 1 9.7210 1.2806 -1.5813 48 1 4.9269 -2.5374 -2.1414 49 1 5.4947 -1.9412 -3.7230 50 1 2.9712 -1.7490 -3.3339 51 1 3.7855 -0.2253 -3.7746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271916721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:44:45 Heat of formation + Delta-G solvation = 1.930083 kcal Electronic energy + Delta-G solvation = -28533.626834 eV Core-core repulsion = 24818.971852 eV Total energy + Delta-G solvation = -3714.654982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.06974 -39.49599 -37.18331 -36.13773 -33.93697 -33.37968 -31.59465 -31.11143 -30.64972 -29.90232 -27.30560 -26.45499 -24.58958 -23.24097 -23.07905 -22.79666 -21.63998 -20.89996 -20.24789 -18.46043 -17.37894 -16.98239 -16.32785 -15.82809 -15.63868 -15.46216 -15.02008 -14.91315 -14.59956 -14.25881 -13.93232 -13.86754 -13.62466 -13.54337 -13.37099 -13.12607 -12.94487 -12.72598 -12.38664 -12.20589 -12.12439 -12.00707 -11.93332 -11.72001 -11.40992 -11.12243 -11.09813 -10.98125 -10.81870 -10.79864 -10.63189 -10.50384 -10.38302 -10.20876 -9.57446 -9.33877 -9.15189 -8.88562 -8.70498 -8.22485 -7.02011 -6.15679 -3.33260 1.12836 1.16996 2.88705 3.30365 3.35453 3.45714 3.50825 3.55564 4.43618 4.48727 4.58594 4.67834 4.73829 4.77869 4.82463 4.83416 4.89955 5.01897 5.15467 5.25871 5.28170 5.30306 5.34941 5.42691 5.52389 5.59183 5.60155 5.62050 5.75724 5.78404 5.81307 5.81964 5.86164 5.89975 5.97993 6.00658 6.07120 6.12672 6.20288 6.22044 6.24303 6.28374 6.29058 6.44483 6.50079 6.57288 6.74163 6.78511 6.94578 7.79175 7.85699 8.21524 8.48337 8.85235 9.62825 10.04646 10.98845 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.003238 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.084182 B = 8644.909531 C =10733.355108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.110 4.110 5 C -0.110 4.110 6 C -0.085 4.085 7 C -0.076 4.076 8 C -0.117 4.117 9 C -0.118 4.118 10 C -0.129 4.129 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.515 3.485 14 O -0.556 6.556 15 N -0.599 5.599 16 C 0.084 3.916 17 C 0.133 3.867 18 N -0.598 5.598 19 C -0.277 4.277 20 H 0.081 0.919 21 C 0.043 3.957 22 N -0.874 5.874 23 Si 0.833 3.167 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.260 1.260 27 C 0.132 3.868 28 C 0.095 3.905 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.031 0.969 46 H 0.077 0.923 47 H 0.264 0.736 48 H 0.025 0.975 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.300 1.323 14.884 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.132 4.132 3 H 0.110 0.890 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.122 4.122 7 C -0.076 4.076 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.147 4.147 11 C -0.138 4.138 12 C -0.137 4.137 13 C 0.303 3.697 14 O -0.435 6.435 15 N -0.331 5.331 16 C -0.041 4.041 17 C 0.006 3.994 18 N -0.322 5.322 19 C -0.404 4.404 20 H 0.099 0.901 21 C -0.159 4.159 22 N -0.514 5.514 23 Si 0.659 3.341 24 H -0.219 1.219 25 H -0.220 1.220 26 H -0.184 1.184 27 C 0.005 3.995 28 C -0.029 4.029 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.095 0.905 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.463 0.984 14.585 22.774 hybrid contribution 0.552 -0.340 1.036 1.223 sum -16.911 0.644 15.622 23.031 Atomic orbital electron populations 1.21643 0.92825 1.02719 1.01656 1.21331 0.97876 1.00569 0.93417 0.89042 1.21585 1.01653 0.99409 0.92187 1.21597 1.01433 0.99199 0.92525 1.20669 1.01832 0.98320 0.91395 1.19959 0.94465 0.96633 0.96588 1.21138 0.99813 0.96117 0.96478 1.21169 0.96788 0.99680 0.96015 1.21136 0.94859 0.98490 1.00234 1.21142 0.99603 0.96486 0.96598 1.21076 0.96419 1.00184 0.96041 1.20604 0.80768 0.83012 0.85351 1.90627 1.57096 1.32895 1.62909 1.48064 1.16986 1.43338 1.24693 1.22646 0.92571 0.92021 0.96846 1.21718 0.92561 0.96129 0.88964 1.44265 1.17046 1.46082 1.24764 1.18740 0.86760 1.42265 0.92671 0.90120 1.25256 0.96378 0.97179 0.97085 1.70150 1.19173 1.23403 1.38628 0.87560 0.79114 0.81299 0.86106 1.21880 1.22021 1.18435 1.21353 0.89352 0.91197 0.97558 1.22189 0.97548 0.98145 0.85033 0.91755 0.92061 0.92585 0.91071 0.91130 0.91360 0.91518 0.90649 0.90876 0.85901 0.86140 0.86339 0.86262 0.86146 0.91042 0.90473 0.95148 0.90457 0.92672 0.95677 0.90801 0.89796 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.25 37.16 0.31 -1.14 16 2 C -0.11 -1.35 1.86 -91.77 -0.17 -1.52 16 3 H 0.09 1.01 6.53 -51.93 -0.34 0.67 16 4 C -0.11 -1.22 4.42 -26.73 -0.12 -1.34 16 5 C -0.11 -1.00 4.95 -26.73 -0.13 -1.13 16 6 C -0.08 -0.76 5.35 -27.88 -0.15 -0.91 16 7 C -0.08 -0.72 5.13 -104.62 -0.54 -1.26 16 8 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 9 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 10 C -0.13 -1.06 10.05 -39.59 -0.40 -1.46 16 11 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 12 C -0.12 -1.05 9.70 -39.58 -0.38 -1.44 16 13 C 0.51 8.37 6.77 -10.99 -0.07 8.30 16 14 O -0.56 -10.68 15.67 5.56 0.09 -10.59 16 15 N -0.60 -10.15 2.94 -172.22 -0.51 -10.66 16 16 C 0.08 1.37 6.24 -3.37 -0.02 1.35 16 17 C 0.13 2.69 4.62 -3.37 -0.02 2.68 16 18 N -0.60 -13.63 2.68 -171.77 -0.46 -14.09 16 19 C -0.28 -7.39 9.80 -15.06 -0.15 -7.53 16 20 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 21 C 0.04 1.18 4.75 -17.43 -0.08 1.10 16 22 N -0.87 -25.39 13.97 55.49 0.78 -24.62 16 23 Si 0.83 20.38 26.62 -169.99 -4.53 15.85 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.26 -6.07 5.22 56.52 0.29 -5.77 16 27 C 0.13 2.59 6.67 -3.60 -0.02 2.57 16 28 C 0.09 1.67 6.60 -3.59 -0.02 1.64 16 29 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 30 H 0.06 0.54 6.87 -51.93 -0.36 0.18 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.87 7.54 -51.93 -0.39 0.48 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.59 6.71 -51.93 -0.35 0.24 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 1.02 5.03 -51.93 -0.26 0.76 16 45 H 0.03 0.62 6.85 -51.93 -0.36 0.27 16 46 H 0.08 1.67 5.87 -51.93 -0.30 1.37 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 1.41 7.93 -51.93 -0.41 0.99 16 50 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -31.37 396.31 -10.51 -41.88 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.71 Total: 0.67 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -3.15 Total: -4.42 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.19 Total: -49.37 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.53 Total: 15.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.37 -10.51 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271916721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.813 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds