Wall clock time and date at job start Sat Apr 11 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47222 * 2 1 4 4 C 1.53004 * 109.47158 * 119.99573 * 2 1 3 5 5 N 1.46498 * 109.47404 * 295.00524 * 4 2 1 6 6 C 1.36939 * 119.99957 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00327 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99763 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99835 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99907 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46725 * 60.00157 * 10 8 6 12 12 H 1.48494 * 109.47191 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47396 * 300.00350 * 10 8 6 14 14 C 1.53000 * 109.47358 * 239.99805 * 2 1 3 15 15 N 1.46499 * 109.46657 * 64.99847 * 14 2 1 16 16 C 1.34776 * 119.99531 * 179.97438 * 15 14 2 17 17 O 1.21557 * 120.00375 * 0.02562 * 16 15 14 18 18 C 1.47846 * 120.00074 * 179.97438 * 16 15 14 19 19 C 1.39596 * 120.14330 * 0.30471 * 18 16 15 20 20 C 1.37935 * 119.85571 * 180.25011 * 19 18 16 21 21 C 1.38387 * 120.14051 * 359.46695 * 20 19 18 22 22 C 1.38335 * 120.29203 * 0.23640 * 21 20 19 23 23 C 1.50706 * 119.92540 * 180.02562 * 22 21 20 24 24 C 1.54274 * 110.03175 * 57.90975 * 23 22 21 25 25 C 1.54961 * 104.15840 * 217.13646 * 24 23 22 26 26 C 1.54893 * 102.77981 * 37.88709 * 25 24 23 27 27 C 1.53868 * 110.03189 * 300.69293 * 23 22 21 28 28 C 1.37970 * 120.14676 * 0.04229 * 22 21 20 29 29 H 1.08993 * 109.47012 * 59.99838 * 1 2 3 30 30 H 1.08997 * 109.46891 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46910 * 300.00343 * 1 2 3 32 32 H 1.09005 * 109.46836 * 55.00509 * 4 2 1 33 33 H 1.08993 * 109.46971 * 174.99786 * 4 2 1 34 34 H 0.97001 * 119.99833 * 359.97438 * 5 4 2 35 35 H 0.97007 * 119.99690 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.46694 * 305.00331 * 14 2 1 37 37 H 1.09000 * 109.46860 * 185.00097 * 14 2 1 38 38 H 0.96996 * 120.00595 * 0.02562 * 15 14 2 39 39 H 1.08004 * 120.07581 * 359.97438 * 19 18 16 40 40 H 1.08002 * 119.93294 * 179.75138 * 20 19 18 41 41 H 1.08006 * 119.84850 * 180.25881 * 21 20 19 42 42 H 1.08997 * 110.01615 * 179.30057 * 23 22 21 43 43 H 1.09000 * 110.48426 * 335.78111 * 24 23 22 44 44 H 1.08996 * 110.48729 * 98.42535 * 24 23 22 45 45 H 1.08998 * 110.72056 * 279.57139 * 25 24 23 46 46 H 1.08996 * 110.92316 * 156.29232 * 25 24 23 47 47 H 1.08994 * 110.48908 * 203.40499 * 26 25 24 48 48 H 1.09001 * 110.59904 * 80.81614 * 26 25 24 49 49 H 1.09005 * 110.03518 * 238.56662 * 27 23 22 50 50 H 1.08998 * 110.03838 * 359.94830 * 27 23 22 51 51 H 1.08004 * 120.07249 * 179.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0020 -0.4202 3.6856 7 1 2.5630 -1.3374 3.7866 8 6 1.6351 0.2970 4.8161 9 7 0.9517 1.4152 4.6930 10 14 2.1113 -0.3248 6.5120 11 1 3.5904 -0.4151 6.6087 12 1 1.6047 0.6150 7.5440 13 1 1.5180 -1.6683 6.7312 14 6 2.0401 -0.7213 -1.2492 15 7 1.6525 0.0353 -2.4423 16 6 1.9965 -0.4131 -3.6658 17 8 2.6280 -1.4456 -3.7794 18 6 1.6049 0.3501 -4.8700 19 6 0.8842 1.5388 -4.7429 20 6 0.5175 2.2434 -5.8705 21 6 0.8720 1.7799 -7.1254 22 6 1.5914 0.6058 -7.2580 23 6 1.9735 0.1089 -8.6285 24 6 2.8067 1.1783 -9.3650 25 6 2.3382 1.0753 -10.8385 26 6 0.8188 0.8096 -10.6972 27 6 0.7104 -0.1257 -9.4752 28 6 1.9595 -0.1115 -6.1384 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7994 1.2056 34 1 1.1488 0.8595 2.3518 35 1 0.6950 1.9161 5.4831 36 1 1.6054 -1.7198 -1.2951 37 1 3.1264 -0.7995 -1.2055 38 1 1.1489 0.8594 -2.3517 39 1 0.6106 1.9038 -3.7639 40 1 -0.0435 3.1612 -5.7738 41 1 0.5859 2.3376 -8.0050 42 1 2.5438 -0.8161 -8.5444 43 1 2.5935 2.1698 -8.9655 44 1 3.8705 0.9546 -9.2855 45 1 2.8306 0.2436 -11.3424 46 1 2.5192 2.0091 -11.3707 47 1 0.4329 0.3174 -11.5898 48 1 0.2821 1.7405 -10.5139 49 1 0.6680 -1.1645 -9.8028 50 1 -0.1792 0.1188 -8.8947 51 1 2.5208 -1.0282 -6.2433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:45:56 Heat of formation + Delta-G solvation = -29.897448 kcal Electronic energy + Delta-G solvation = -26974.142360 eV Core-core repulsion = 23258.107232 eV Total energy + Delta-G solvation = -3716.035128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59180 -39.37648 -37.59079 -36.76217 -34.42884 -32.79499 -31.99587 -31.36136 -29.98033 -29.10612 -27.95994 -26.59130 -25.49582 -23.89622 -22.66003 -22.25857 -21.12685 -20.94394 -20.21366 -19.39055 -17.91290 -17.04157 -16.53668 -16.34545 -15.90881 -15.64250 -15.42697 -14.83509 -14.72790 -14.33270 -14.30789 -13.83852 -13.82394 -13.65369 -13.50155 -13.14879 -12.96629 -12.60968 -12.39274 -12.28789 -12.05305 -11.77839 -11.71240 -11.53978 -11.48715 -11.25304 -11.06387 -11.04435 -10.90334 -10.86385 -10.70322 -10.57817 -10.42738 -10.12700 -9.91829 -9.66284 -9.28613 -9.08571 -8.94516 -8.86809 -6.92056 -5.76722 -3.05065 0.60583 1.04797 2.72588 3.11331 3.45040 3.49216 3.50358 3.60980 4.10740 4.20198 4.27594 4.51054 4.57993 4.59757 4.63653 4.80449 4.96045 5.02104 5.03211 5.07332 5.13066 5.14217 5.21473 5.24601 5.33035 5.37922 5.42435 5.48864 5.56819 5.58101 5.61735 5.70761 5.78532 5.80899 5.87210 5.90516 5.95503 5.98201 6.03709 6.07818 6.12645 6.23583 6.26125 6.38707 6.46127 6.58732 6.64978 6.77213 6.86715 7.45928 7.70503 8.15341 8.42412 9.53659 10.10923 10.45832 11.46172 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.038600 B = 0.001653 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.206733 B =16934.738785 C =17280.606474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.719 5.719 16 C 0.554 3.446 17 O -0.540 6.540 18 C -0.128 4.128 19 C -0.091 4.091 20 C -0.124 4.124 21 C -0.092 4.092 22 C -0.083 4.083 23 C -0.055 4.055 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.118 4.118 28 C -0.059 4.059 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 2.388 -33.031 33.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.371 5.371 16 C 0.341 3.659 17 O -0.418 6.418 18 C -0.131 4.131 19 C -0.110 4.110 20 C -0.142 4.142 21 C -0.111 4.111 22 C -0.083 4.083 23 C -0.073 4.073 24 C -0.155 4.155 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.156 4.156 28 C -0.078 4.078 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.122 1.533 -32.925 32.980 hybrid contribution -0.212 0.424 1.159 1.252 sum -1.334 1.957 -31.767 31.855 Atomic orbital electron populations 1.21795 0.94655 1.02007 1.01456 1.21562 0.96726 1.00518 0.94193 0.90519 1.20574 0.96635 0.94219 0.85341 1.42323 1.66944 1.27672 1.00559 1.19205 1.28767 1.05463 0.83686 0.91191 1.24731 1.01004 0.97390 0.97846 1.69649 1.43533 1.16563 1.28591 0.86249 0.78024 0.77699 0.84114 1.21273 1.21699 1.21268 1.21454 1.00267 0.95297 0.82711 1.45993 1.57378 1.27848 1.05855 1.18277 0.79487 0.84874 0.83248 1.90771 1.40110 1.24210 1.86744 1.19989 1.02515 0.96744 0.93842 1.21342 0.96555 0.93821 0.99241 1.21093 1.00654 1.00291 0.92171 1.21166 0.96878 0.95499 0.97525 1.19829 0.98522 0.95241 0.94671 1.20819 0.96633 0.99018 0.90839 1.22524 0.99474 0.98759 0.94771 1.22525 0.95747 1.01619 0.96469 1.22381 0.96474 0.99542 0.97878 1.22268 0.97320 0.99996 0.96022 1.21184 0.96988 0.99258 0.90376 0.93988 0.92752 0.91088 0.95961 0.96096 0.78216 0.93501 0.91167 0.91174 0.76467 0.85558 0.85348 0.85718 0.89978 0.91114 0.91362 0.91436 0.91513 0.91669 0.91653 0.91491 0.91331 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.94 37.16 0.33 -1.76 16 2 C -0.11 -1.72 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.32 5.33 -59.91 -0.32 -18.64 16 6 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.13 1.78 5.06 -4.04 -0.02 1.76 16 15 N -0.72 -8.88 5.23 -61.25 -0.32 -9.20 16 16 C 0.55 7.62 7.77 -12.33 -0.10 7.53 16 17 O -0.54 -9.31 16.35 5.32 0.09 -9.22 16 18 C -0.13 -1.43 5.87 -104.97 -0.62 -2.05 16 19 C -0.09 -0.81 9.54 -39.19 -0.37 -1.18 16 20 C -0.12 -0.94 10.03 -39.64 -0.40 -1.33 16 21 C -0.09 -0.68 8.10 -39.49 -0.32 -1.00 16 22 C -0.08 -0.69 4.68 -104.68 -0.49 -1.18 16 23 C -0.05 -0.37 3.13 -90.65 -0.28 -0.65 16 24 C -0.12 -0.69 6.27 -25.03 -0.16 -0.85 16 25 C -0.13 -0.62 6.91 -24.70 -0.17 -0.79 16 26 C -0.13 -0.61 6.83 -25.07 -0.17 -0.78 16 27 C -0.12 -0.70 6.24 -25.61 -0.16 -0.86 16 28 C -0.06 -0.62 9.22 -39.19 -0.36 -0.98 16 29 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.98 6.85 -40.82 -0.28 9.71 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.40 4.01 5.69 -40.82 -0.23 3.77 16 39 H 0.13 0.90 6.41 -52.48 -0.34 0.57 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.12 0.70 7.77 -52.48 -0.41 0.29 16 42 H 0.08 0.57 7.90 -51.93 -0.41 0.16 16 43 H 0.07 0.42 6.90 -51.93 -0.36 0.06 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.44 7.28 -51.93 -0.38 0.06 16 51 H 0.13 1.47 7.55 -52.48 -0.40 1.07 16 LS Contribution 405.66 15.07 6.11 6.11 Total: -1.00 -32.64 405.66 -11.10 -43.75 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.59 Total: 7.42 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.78 Total: -10.30 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.08 Total: -55.22 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.64 -11.10 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.851 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds