Wall clock time and date at job start Sat Apr 11 2020 02:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46781 * 2 1 4 4 C 1.53004 * 109.47184 * 119.99439 * 2 1 3 5 5 C 1.50697 * 109.47441 * 295.00588 * 4 2 1 6 6 O 1.21285 * 119.99978 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00129 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99761 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47022 * 175.54062 * 8 7 5 10 10 N 1.46502 * 110.01725 * 55.25365 * 9 8 7 11 11 C 1.36937 * 119.99895 * 61.55294 * 10 9 8 12 12 H 1.08005 * 120.00154 * 354.37344 * 11 10 9 13 13 C 1.38810 * 120.00182 * 174.37771 * 11 10 9 14 14 N 1.31617 * 119.99926 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00159 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47442 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47665 * 119.99881 * 15 13 11 18 18 H 1.48506 * 109.46945 * 239.99629 * 15 13 11 19 19 C 1.54265 * 110.03007 * 293.81547 * 9 8 7 20 20 C 1.54886 * 104.19436 * 217.10635 * 19 9 8 21 21 C 1.54892 * 102.75184 * 37.94147 * 20 19 9 22 22 C 1.53867 * 110.03250 * 176.64916 * 9 8 7 23 23 C 1.50697 * 109.47332 * 239.99701 * 2 1 3 24 24 C 1.38238 * 120.00129 * 120.00073 * 23 2 1 25 25 C 1.38226 * 120.00378 * 179.97438 * 24 23 2 26 26 C 1.38239 * 119.99793 * 359.97176 * 25 24 23 27 27 C 1.38238 * 119.99956 * 0.02562 * 26 25 24 28 28 C 1.38234 * 119.99886 * 299.97899 * 23 2 1 29 29 H 1.09003 * 109.47400 * 300.00188 * 1 2 3 30 30 H 1.09001 * 109.47388 * 60.00612 * 1 2 3 31 31 H 1.09001 * 109.47489 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46957 * 55.00253 * 4 2 1 33 33 H 1.09001 * 109.47020 * 175.00121 * 4 2 1 34 34 H 0.97001 * 120.00172 * 359.97438 * 7 5 4 35 35 H 1.09005 * 109.47051 * 295.53831 * 8 7 5 36 36 H 1.08992 * 109.47479 * 55.53846 * 8 7 5 37 37 H 0.96996 * 120.00305 * 241.54859 * 10 9 8 38 38 H 0.96998 * 120.00459 * 180.02562 * 14 13 11 39 39 H 1.09003 * 110.48932 * 335.78074 * 19 9 8 40 40 H 1.08999 * 110.49038 * 98.42489 * 19 9 8 41 41 H 1.09003 * 110.75833 * 279.62419 * 20 19 9 42 42 H 1.09005 * 110.75836 * 156.26032 * 20 19 9 43 43 H 1.09000 * 110.48505 * 203.38430 * 21 20 19 44 44 H 1.08996 * 110.48457 * 80.73377 * 21 20 19 45 45 H 1.09001 * 110.03102 * 238.56650 * 22 9 8 46 46 H 1.08997 * 110.03622 * 359.97438 * 22 9 8 47 47 H 1.08003 * 119.99821 * 359.97438 * 24 23 2 48 48 H 1.08001 * 120.00471 * 179.97438 * 25 24 23 49 49 H 1.07996 * 119.99972 * 179.72370 * 26 25 24 50 50 H 1.08005 * 119.99868 * 179.97438 * 27 26 25 51 51 H 1.07993 * 120.00364 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0115 1.0875 2.3633 7 7 1.9843 -0.3918 3.7002 8 6 1.5971 0.3652 4.8933 9 6 2.0087 -0.4113 6.1458 10 7 3.4413 -0.7141 6.0999 11 6 4.3558 0.3046 6.0688 12 1 4.0214 1.3283 5.9865 13 6 5.7128 0.0217 6.1432 14 7 6.1204 -1.2257 6.2440 15 14 6.9602 1.4115 6.1016 16 1 6.2504 2.7106 5.9854 17 1 7.7617 1.3950 7.3517 18 1 7.8606 1.2336 4.9341 19 6 1.1945 -1.7175 6.2490 20 6 0.9317 -1.8823 7.7664 21 6 0.6832 -0.4256 8.2306 22 6 1.6836 0.4100 7.4056 23 6 2.0323 -0.7104 -1.2304 24 6 2.8271 -0.0387 -2.1404 25 6 3.2884 -0.6905 -3.2687 26 6 2.9554 -2.0143 -3.4868 27 6 2.1606 -2.6861 -2.5768 28 6 1.6988 -2.0340 -1.4488 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2057 34 1 2.4877 -1.2160 3.7909 35 1 2.0959 1.3344 4.8864 36 1 0.5172 0.5125 4.8956 37 1 3.7421 -1.6363 6.0915 38 1 7.0686 -1.4234 6.2963 39 1 0.2534 -1.6243 5.7068 40 1 1.7733 -2.5590 5.8684 41 1 1.8041 -2.3034 8.2661 42 1 0.0501 -2.4991 7.9411 43 1 0.8891 -0.3244 9.2962 44 1 -0.3403 -0.1238 8.0084 45 1 2.5916 0.5826 7.9834 46 1 1.2331 1.3620 7.1249 47 1 3.0877 0.9955 -1.9697 48 1 3.9090 -0.1655 -3.9798 49 1 3.3120 -2.5222 -4.3706 50 1 1.9001 -3.7202 -2.7475 51 1 1.0785 -2.5591 -0.7376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:37 Heat of formation + Delta-G solvation = -25.306588 kcal Electronic energy + Delta-G solvation = -28544.382466 eV Core-core repulsion = 24828.546413 eV Total energy + Delta-G solvation = -3715.836053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.95722 -39.14654 -38.14934 -35.04903 -34.01223 -33.28921 -31.00591 -30.74295 -29.86745 -28.42352 -28.30050 -27.07800 -24.42029 -23.53962 -23.03630 -22.56782 -20.65781 -20.18501 -19.51485 -18.51363 -17.22306 -17.05530 -16.37915 -15.81939 -15.56151 -15.21128 -14.87555 -14.81245 -14.48135 -14.11392 -13.82363 -13.67057 -13.47081 -13.34297 -13.22716 -12.91653 -12.69022 -12.49203 -12.39814 -12.07113 -11.63925 -11.52486 -11.37165 -11.14070 -11.00617 -10.84449 -10.81826 -10.69375 -10.63870 -10.58757 -10.50233 -10.34574 -10.07856 -9.83850 -9.67010 -9.31739 -9.00505 -8.94662 -8.75879 -8.39386 -7.03668 -5.83122 -3.12315 1.27530 1.31615 3.10003 3.39586 3.47576 3.48198 3.64399 3.80506 4.54708 4.69023 4.70469 4.90314 4.99240 5.05260 5.09420 5.12423 5.17150 5.23100 5.33944 5.43233 5.45304 5.54723 5.57524 5.66274 5.68257 5.76556 5.81792 5.92953 5.95819 5.95920 5.98353 6.07185 6.09248 6.15254 6.19605 6.24786 6.32808 6.34244 6.41888 6.42438 6.47450 6.57500 6.61996 6.64516 6.72844 6.83603 6.92343 7.02689 7.15470 7.70732 8.10204 8.35720 8.74036 9.47485 10.01570 10.37169 11.38927 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.003219 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.481485 B = 8695.527711 C =10225.152292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.035 4.035 3 H 0.086 0.914 4 C -0.134 4.134 5 C 0.509 3.491 6 O -0.556 6.556 7 N -0.702 5.702 8 C 0.119 3.881 9 C 0.188 3.812 10 N -0.712 5.712 11 C -0.232 4.232 12 H 0.070 0.930 13 C -0.009 4.009 14 N -0.931 5.931 15 Si 0.900 3.100 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.293 1.293 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.071 4.071 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.129 4.129 27 C -0.120 4.120 28 C -0.115 4.115 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.403 0.597 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.079 -3.673 -12.150 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.054 4.054 3 H 0.104 0.896 4 C -0.174 4.174 5 C 0.295 3.705 6 O -0.436 6.436 7 N -0.351 5.351 8 C -0.007 4.007 9 C 0.096 3.904 10 N -0.354 5.354 11 C -0.363 4.363 12 H 0.088 0.912 13 C -0.205 4.205 14 N -0.579 5.579 15 Si 0.732 3.268 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.220 1.220 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.170 4.170 23 C -0.071 4.071 24 C -0.134 4.134 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.138 4.138 28 C -0.133 4.133 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.238 0.762 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.218 0.782 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.409 -2.786 -12.191 16.928 hybrid contribution 1.377 0.059 0.024 1.378 sum -10.033 -2.726 -12.168 16.005 Atomic orbital electron populations 1.21946 0.93810 1.01485 1.03125 1.19875 0.96607 0.99209 0.89695 0.89604 1.21725 1.03268 0.99912 0.92484 1.20483 0.79483 0.85720 0.84792 1.90614 1.41267 1.24893 1.86817 1.45821 1.56161 1.27774 1.05367 1.21910 0.97777 0.95896 0.85129 1.20451 0.86166 0.92260 0.91493 1.42551 0.98196 1.06576 1.88061 1.19139 0.86702 0.88558 1.41926 0.91229 1.24693 0.96983 0.96043 1.02744 1.69656 1.14365 1.16544 1.57316 0.86221 0.81852 0.81629 0.77139 1.20565 1.21917 1.21973 1.22570 0.99276 0.97794 0.96367 1.22418 1.00674 0.96556 0.96053 1.22307 0.98672 0.95560 0.99285 1.22664 0.99425 0.97617 0.97320 1.19972 0.96865 0.94205 0.96060 1.21131 0.97824 1.00086 0.94395 1.21134 1.00022 0.94977 0.97625 1.21119 0.99121 0.94936 0.99528 1.21133 0.98169 0.99773 0.94722 1.21026 1.00224 0.94367 0.97646 0.90048 0.93085 0.93312 0.89227 0.88773 0.76161 0.92078 0.92835 0.78179 0.93611 0.91856 0.91595 0.91274 0.92635 0.92464 0.92611 0.89954 0.93053 0.86043 0.86252 0.86401 0.86250 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.75 37.15 0.32 -1.45 16 2 C -0.04 -0.44 2.21 -91.77 -0.20 -0.64 16 3 H 0.09 1.19 7.69 -51.93 -0.40 0.79 16 4 C -0.13 -1.74 4.91 -27.88 -0.14 -1.88 16 5 C 0.51 8.38 7.55 -10.99 -0.08 8.30 16 6 O -0.56 -10.64 13.97 5.55 0.08 -10.57 16 7 N -0.70 -11.81 5.23 -60.29 -0.32 -12.12 16 8 C 0.12 2.14 4.04 -4.04 -0.02 2.13 16 9 C 0.19 3.36 0.68 -130.70 -0.09 3.27 16 10 N -0.71 -15.74 4.53 -46.20 -0.21 -15.95 16 11 C -0.23 -5.92 8.52 -15.06 -0.13 -6.05 16 12 H 0.07 1.81 7.27 -52.48 -0.38 1.42 16 13 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 14 N -0.93 -26.49 13.07 55.49 0.73 -25.77 16 15 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 C -0.12 -1.84 5.72 -25.07 -0.14 -1.98 16 20 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 21 C -0.12 -1.74 6.83 -25.07 -0.17 -1.91 16 22 C -0.13 -2.26 5.93 -25.62 -0.15 -2.41 16 23 C -0.07 -0.82 4.78 -104.62 -0.50 -1.32 16 24 C -0.12 -1.30 9.67 -39.59 -0.38 -1.69 16 25 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 26 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 27 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 28 C -0.11 -1.22 8.76 -39.58 -0.35 -1.56 16 29 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.52 7.39 -51.93 -0.38 0.14 16 32 H 0.09 0.99 7.57 -51.93 -0.39 0.59 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.40 6.64 7.99 -40.82 -0.33 6.31 16 35 H 0.06 1.27 7.46 -51.93 -0.39 0.88 16 36 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 37 H 0.38 9.09 7.45 -40.82 -0.30 8.79 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.06 0.88 7.79 -51.93 -0.40 0.47 16 40 H 0.07 1.00 7.72 -51.93 -0.40 0.60 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.66 7.36 -51.93 -0.38 1.28 16 46 H 0.05 0.85 7.67 -51.93 -0.40 0.45 16 47 H 0.12 1.25 7.95 -52.48 -0.42 0.83 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 50 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 51 H 0.12 1.13 7.16 -52.49 -0.38 0.75 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -29.34 402.36 -10.79 -40.13 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -8.62 Total: 15.50 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -3.49 Total: -14.20 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.20 Total: -53.84 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.34 -10.79 -40.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.826 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds