Wall clock time and date at job start Sat Apr 11 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46781 * 2 1 4 4 C 1.53004 * 109.47184 * 119.99439 * 2 1 3 5 5 C 1.50697 * 109.47441 * 295.00588 * 4 2 1 6 6 O 1.21285 * 119.99978 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00129 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99761 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47022 * 175.54062 * 8 7 5 10 10 N 1.46502 * 110.01725 * 55.25365 * 9 8 7 11 11 C 1.36937 * 119.99895 * 61.55294 * 10 9 8 12 12 H 1.08005 * 120.00154 * 354.37344 * 11 10 9 13 13 C 1.38810 * 120.00182 * 174.37771 * 11 10 9 14 14 N 1.31617 * 119.99926 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00159 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47442 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47665 * 119.99881 * 15 13 11 18 18 H 1.48506 * 109.46945 * 239.99629 * 15 13 11 19 19 C 1.54265 * 110.03007 * 293.81547 * 9 8 7 20 20 C 1.54886 * 104.19436 * 217.10635 * 19 9 8 21 21 C 1.54892 * 102.75184 * 37.94147 * 20 19 9 22 22 C 1.53867 * 110.03250 * 176.64916 * 9 8 7 23 23 C 1.50697 * 109.47332 * 239.99701 * 2 1 3 24 24 C 1.38238 * 120.00129 * 120.00073 * 23 2 1 25 25 C 1.38226 * 120.00378 * 179.97438 * 24 23 2 26 26 C 1.38239 * 119.99793 * 359.97176 * 25 24 23 27 27 C 1.38238 * 119.99956 * 0.02562 * 26 25 24 28 28 C 1.38234 * 119.99886 * 299.97899 * 23 2 1 29 29 H 1.09003 * 109.47400 * 300.00188 * 1 2 3 30 30 H 1.09001 * 109.47388 * 60.00612 * 1 2 3 31 31 H 1.09001 * 109.47489 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46957 * 55.00253 * 4 2 1 33 33 H 1.09001 * 109.47020 * 175.00121 * 4 2 1 34 34 H 0.97001 * 120.00172 * 359.97438 * 7 5 4 35 35 H 1.09005 * 109.47051 * 295.53831 * 8 7 5 36 36 H 1.08992 * 109.47479 * 55.53846 * 8 7 5 37 37 H 0.96996 * 120.00305 * 241.54859 * 10 9 8 38 38 H 0.96998 * 120.00459 * 180.02562 * 14 13 11 39 39 H 1.09003 * 110.48932 * 335.78074 * 19 9 8 40 40 H 1.08999 * 110.49038 * 98.42489 * 19 9 8 41 41 H 1.09003 * 110.75833 * 279.62419 * 20 19 9 42 42 H 1.09005 * 110.75836 * 156.26032 * 20 19 9 43 43 H 1.09000 * 110.48505 * 203.38430 * 21 20 19 44 44 H 1.08996 * 110.48457 * 80.73377 * 21 20 19 45 45 H 1.09001 * 110.03102 * 238.56650 * 22 9 8 46 46 H 1.08997 * 110.03622 * 359.97438 * 22 9 8 47 47 H 1.08003 * 119.99821 * 359.97438 * 24 23 2 48 48 H 1.08001 * 120.00471 * 179.97438 * 25 24 23 49 49 H 1.07996 * 119.99972 * 179.72370 * 26 25 24 50 50 H 1.08005 * 119.99868 * 179.97438 * 27 26 25 51 51 H 1.07993 * 120.00364 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0115 1.0875 2.3633 7 7 1.9843 -0.3918 3.7002 8 6 1.5971 0.3652 4.8933 9 6 2.0087 -0.4113 6.1458 10 7 3.4413 -0.7141 6.0999 11 6 4.3558 0.3046 6.0688 12 1 4.0214 1.3283 5.9865 13 6 5.7128 0.0217 6.1432 14 7 6.1204 -1.2257 6.2440 15 14 6.9602 1.4115 6.1016 16 1 6.2504 2.7106 5.9854 17 1 7.7617 1.3950 7.3517 18 1 7.8606 1.2336 4.9341 19 6 1.1945 -1.7175 6.2490 20 6 0.9317 -1.8823 7.7664 21 6 0.6832 -0.4256 8.2306 22 6 1.6836 0.4100 7.4056 23 6 2.0323 -0.7104 -1.2304 24 6 2.8271 -0.0387 -2.1404 25 6 3.2884 -0.6905 -3.2687 26 6 2.9554 -2.0143 -3.4868 27 6 2.1606 -2.6861 -2.5768 28 6 1.6988 -2.0340 -1.4488 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2057 34 1 2.4877 -1.2160 3.7909 35 1 2.0959 1.3344 4.8864 36 1 0.5172 0.5125 4.8956 37 1 3.7421 -1.6363 6.0915 38 1 7.0686 -1.4234 6.2963 39 1 0.2534 -1.6243 5.7068 40 1 1.7733 -2.5590 5.8684 41 1 1.8041 -2.3034 8.2661 42 1 0.0501 -2.4991 7.9411 43 1 0.8891 -0.3244 9.2962 44 1 -0.3403 -0.1238 8.0084 45 1 2.5916 0.5826 7.9834 46 1 1.2331 1.3620 7.1249 47 1 3.0877 0.9955 -1.9697 48 1 3.9090 -0.1655 -3.9798 49 1 3.3120 -2.5222 -4.3706 50 1 1.9001 -3.7202 -2.7475 51 1 1.0785 -2.5591 -0.7376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753679657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:36 Heat of formation + Delta-G solvation = -40.439031 kcal Electronic energy + Delta-G solvation = -28545.038658 eV Core-core repulsion = 24828.546413 eV Total energy + Delta-G solvation = -3716.492245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12601 -40.22262 -39.46891 -36.05410 -35.48659 -35.03313 -32.45119 -31.76005 -30.86024 -29.75601 -29.59405 -28.35646 -26.01014 -24.94032 -24.20095 -23.37274 -21.85773 -21.29775 -20.72754 -19.98303 -18.99553 -18.20055 -17.46566 -17.23343 -16.80846 -16.39103 -16.13520 -15.89559 -15.76884 -15.62644 -15.11906 -14.91214 -14.78118 -14.46109 -14.21636 -14.08621 -14.01018 -13.65162 -13.49628 -13.27321 -13.19239 -12.92112 -12.69145 -12.59999 -12.24940 -12.20670 -12.15121 -12.03207 -11.83664 -11.78986 -11.71555 -11.54667 -11.54065 -11.41008 -11.31006 -10.93460 -10.63886 -9.84149 -9.77520 -9.57146 -8.95619 -7.91667 -5.17131 0.48590 0.54553 1.42599 1.46184 1.52628 1.76653 2.41671 2.56820 2.93425 3.39786 3.69163 3.76376 3.79580 3.86784 3.95955 4.08444 4.15061 4.19753 4.21273 4.26336 4.34731 4.44877 4.52850 4.58166 4.66364 4.66803 4.69654 4.71576 4.78732 4.86432 4.87687 4.97027 5.03051 5.05914 5.15987 5.16452 5.19917 5.20659 5.26029 5.28269 5.38935 5.42318 5.47248 5.59874 5.63673 5.66485 5.67075 5.73743 5.79439 6.16948 6.32731 6.73890 7.38899 7.40190 8.13747 8.38652 9.30929 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.003219 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.481485 B = 8695.527711 C =10225.152292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 H 0.063 0.937 4 C -0.125 4.125 5 C 0.506 3.494 6 O -0.584 6.584 7 N -0.702 5.702 8 C 0.128 3.872 9 C 0.184 3.816 10 N -0.715 5.715 11 C -0.213 4.213 12 H 0.062 0.938 13 C -0.063 4.063 14 N -0.960 5.960 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.296 1.296 18 H -0.298 1.298 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.084 4.084 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.133 4.133 27 C -0.124 4.124 28 C -0.122 4.122 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.406 0.594 35 H 0.027 0.973 36 H 0.066 0.934 37 H 0.376 0.624 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.120 0.880 48 H 0.136 0.864 49 H 0.141 0.859 50 H 0.143 0.857 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 -5.081 -13.123 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.048 4.048 3 H 0.082 0.918 4 C -0.165 4.165 5 C 0.294 3.706 6 O -0.466 6.466 7 N -0.351 5.351 8 C 0.001 3.999 9 C 0.093 3.907 10 N -0.355 5.355 11 C -0.345 4.345 12 H 0.080 0.920 13 C -0.256 4.256 14 N -0.611 5.611 15 Si 0.780 3.220 16 H -0.202 1.202 17 H -0.223 1.223 18 H -0.225 1.225 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.172 4.172 23 C -0.084 4.084 24 C -0.154 4.154 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.142 4.142 28 C -0.140 4.140 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.242 0.758 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.209 0.791 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.138 0.862 48 H 0.154 0.846 49 H 0.159 0.841 50 H 0.160 0.840 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.055 -4.178 -13.165 19.005 hybrid contribution 1.798 0.546 0.282 1.900 sum -11.257 -3.632 -12.883 17.490 Atomic orbital electron populations 1.21859 0.93458 1.02271 1.02096 1.19758 0.96842 0.98122 0.90108 0.91805 1.21722 1.03214 1.00678 0.90854 1.21086 0.78634 0.85476 0.85424 1.90606 1.42537 1.26239 1.87220 1.45839 1.56235 1.27719 1.05326 1.21732 0.98051 0.94423 0.85658 1.20701 0.84195 0.94232 0.91533 1.42611 0.99722 1.05367 1.87807 1.19255 0.87254 0.88935 1.39052 0.92050 1.25213 0.98484 0.97503 1.04395 1.69759 1.13985 1.17715 1.59670 0.85436 0.80089 0.79947 0.76505 1.20208 1.22314 1.22513 1.22528 0.99458 0.95724 0.97499 1.22406 1.01242 0.96773 0.94892 1.22291 0.98845 0.94920 0.99043 1.22610 0.99009 0.98550 0.97000 1.19902 0.97816 0.94878 0.95788 1.21291 0.98470 1.00404 0.95194 1.21400 1.00070 0.95544 0.97500 1.21475 0.98567 0.94766 1.00239 1.21467 0.97640 1.00889 0.94218 1.21222 1.00446 0.93931 0.98406 0.92376 0.92702 0.91563 0.86555 0.88963 0.75822 0.95494 0.91551 0.79063 0.94296 0.89767 0.91678 0.93125 0.89576 0.91881 0.90223 0.93344 0.92615 0.86209 0.84578 0.84099 0.83967 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.75 71.98 0.63 -2.65 16 2 C -0.03 -0.72 2.21 -11.54 -0.03 -0.75 16 3 H 0.06 1.83 7.69 -2.39 -0.02 1.81 16 4 C -0.13 -3.15 4.91 29.85 0.15 -3.01 16 5 C 0.51 16.55 7.55 87.66 0.66 17.21 16 6 O -0.58 -22.62 13.97 -3.05 -0.04 -22.67 16 7 N -0.70 -23.33 5.23 -463.05 -2.42 -25.75 16 8 C 0.13 4.57 4.04 86.38 0.35 4.92 16 9 C 0.18 6.46 0.68 4.33 0.00 6.46 16 10 N -0.71 -31.85 4.53 -300.08 -1.36 -33.20 16 11 C -0.21 -11.03 8.52 84.03 0.72 -10.31 16 12 H 0.06 3.26 7.27 -2.91 -0.02 3.24 16 13 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 14 N -0.96 -55.60 13.07 21.65 0.28 -55.32 16 15 Si 0.95 45.94 29.55 68.60 2.03 47.97 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 17 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 18 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 19 C -0.11 -3.19 5.72 31.67 0.18 -3.01 16 20 C -0.12 -3.00 6.91 31.88 0.22 -2.78 16 21 C -0.11 -3.00 6.83 31.67 0.22 -2.78 16 22 C -0.13 -4.50 5.93 31.32 0.19 -4.31 16 23 C -0.08 -1.86 4.78 -19.87 -0.09 -1.96 16 24 C -0.14 -2.97 9.67 22.27 0.22 -2.76 16 25 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 26 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 27 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 28 C -0.12 -2.33 8.76 22.27 0.20 -2.14 16 29 H 0.06 1.65 5.95 -2.39 -0.01 1.63 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.29 7.39 -2.39 -0.02 1.27 16 32 H 0.12 2.31 7.57 -2.39 -0.02 2.29 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.41 13.11 7.99 -92.71 -0.74 12.37 16 35 H 0.03 1.14 7.46 -2.38 -0.02 1.12 16 36 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 37 H 0.38 17.97 7.45 -92.71 -0.69 17.28 16 38 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 39 H 0.08 2.04 7.79 -2.39 -0.02 2.02 16 40 H 0.06 1.86 7.72 -2.39 -0.02 1.84 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.97 7.36 -2.39 -0.02 1.96 16 46 H 0.06 1.82 7.67 -2.39 -0.02 1.80 16 47 H 0.12 2.53 7.95 -2.91 -0.02 2.50 16 48 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 49 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 50 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 51 H 0.13 2.12 7.16 -2.91 -0.02 2.10 16 Total: -1.00 -64.27 402.36 2.71 -61.55 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -0.51 Total: 44.32 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 4.74 Total: -16.90 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -3.50 Total: -114.28 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.04 Total: -22.67 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -64.27 2.71 -61.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.113 kcal (2) G-P(sol) polarization free energy of solvation -64.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds