Wall clock time and date at job start Sat Apr 11 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47133 * 2 1 4 4 C 1.52996 * 109.47101 * 120.00551 * 2 1 3 5 5 N 1.46506 * 109.47079 * 175.00104 * 4 2 1 6 6 C 1.36930 * 119.99983 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00418 * 359.97438 * 6 5 4 8 8 C 1.38814 * 120.00103 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99837 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00433 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46927 * 89.99717 * 10 8 6 12 12 H 1.48497 * 109.47361 * 210.00059 * 10 8 6 13 13 H 1.48499 * 109.46748 * 330.00373 * 10 8 6 14 14 N 1.46510 * 109.46657 * 240.00189 * 2 1 3 15 15 C 1.46493 * 120.00185 * 299.99763 * 14 2 1 16 16 C 1.34779 * 119.99163 * 120.00141 * 14 2 1 17 17 O 1.21272 * 120.00819 * 357.45179 * 16 14 2 18 18 C 1.50707 * 119.99111 * 177.45400 * 16 14 2 19 19 C 1.52996 * 112.85148 * 76.06798 * 18 16 14 20 20 C 1.50691 * 109.47419 * 54.21496 * 19 18 16 21 21 C 1.38239 * 120.00107 * 264.51944 * 20 19 18 22 22 C 1.38238 * 119.99732 * 179.79049 * 21 20 19 23 23 C 1.38235 * 120.00111 * 0.43402 * 22 21 20 24 24 C 1.38230 * 119.99999 * 359.81361 * 23 22 21 25 25 C 1.38232 * 120.00040 * 359.97438 * 24 23 22 26 26 C 1.53781 * 113.68710 * 207.33266 * 18 16 14 27 27 C 1.53789 * 87.08118 * 89.12577 * 26 18 16 28 28 C 1.53776 * 87.07750 * 25.43032 * 27 26 18 29 29 H 1.08996 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46559 * 299.99840 * 1 2 3 31 31 H 1.08994 * 109.47161 * 59.99407 * 1 2 3 32 32 H 1.09000 * 109.46831 * 294.99436 * 4 2 1 33 33 H 1.09000 * 109.47233 * 54.99917 * 4 2 1 34 34 H 0.97002 * 119.99420 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00023 * 179.97438 * 9 8 6 36 36 H 1.08992 * 109.47255 * 270.78538 * 15 14 2 37 37 H 1.08996 * 109.47204 * 30.78441 * 15 14 2 38 38 H 1.08997 * 109.47208 * 150.78159 * 15 14 2 39 39 H 1.08997 * 109.46887 * 174.21761 * 19 18 16 40 40 H 1.09001 * 109.46787 * 294.21353 * 19 18 16 41 41 H 1.07995 * 119.99892 * 359.97438 * 21 20 19 42 42 H 1.08007 * 119.99403 * 180.27134 * 22 21 20 43 43 H 1.08002 * 119.99477 * 179.83807 * 23 22 21 44 44 H 1.08004 * 119.99697 * 180.02562 * 24 23 22 45 45 H 1.07999 * 119.99843 * 179.97438 * 25 24 23 46 46 H 1.09000 * 113.61835 * 203.67210 * 26 18 16 47 47 H 1.09008 * 113.61380 * 334.58126 * 26 18 16 48 48 H 1.08998 * 113.61528 * 270.88399 * 27 26 18 49 49 H 1.08998 * 113.61132 * 139.98023 * 27 26 18 50 50 H 1.09002 * 113.61302 * 220.01590 * 28 27 26 51 51 H 1.09004 * 113.61298 * 89.11537 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5002 -0.8265 1.1905 6 6 4.1839 -1.4390 2.2065 7 1 3.6469 -1.8443 3.0513 8 6 5.5673 -1.5391 2.1507 9 7 6.2218 -1.0456 1.1208 10 14 6.5001 -2.3740 3.5370 11 1 6.6317 -3.8236 3.2424 12 1 7.8508 -1.7692 3.6595 13 1 5.7593 -2.1932 4.8113 14 7 2.0183 -0.6906 -1.1963 15 6 1.6644 -2.0931 -1.4282 16 6 2.7932 -0.0355 -2.0834 17 8 3.0481 1.1382 -1.9154 18 6 3.3427 -0.7616 -3.2843 19 6 2.2924 -0.9882 -4.3735 20 6 1.6600 0.3287 -4.7432 21 6 0.4712 0.7146 -4.1525 22 6 -0.1067 1.9246 -4.4885 23 6 0.4994 2.7445 -5.4219 24 6 1.6854 2.3563 -6.0164 25 6 2.2656 1.1483 -5.6772 26 6 4.6610 -0.1721 -3.8128 27 6 5.3833 -1.1212 -2.8420 28 6 4.1425 -2.0255 -2.9270 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7518 -0.1584 2.1369 33 1 1.6054 -1.7199 1.2950 34 1 3.9824 -0.4628 0.4314 35 1 7.1885 -1.1152 1.0819 36 1 2.4082 -2.7377 -0.9600 37 1 0.6843 -2.2966 -0.9969 38 1 1.6373 -2.2886 -2.5001 39 1 2.7687 -1.4221 -5.2527 40 1 1.5255 -1.6683 -4.0028 41 1 -0.0043 0.0721 -3.4262 42 1 -1.0331 2.2280 -4.0236 43 1 0.0465 3.6887 -5.6863 44 1 2.1592 2.9971 -6.7453 45 1 3.1920 0.8448 -6.1420 46 1 4.8493 -0.3955 -4.8629 47 1 4.7949 0.8828 -3.5727 48 1 5.5449 -0.6936 -1.8525 49 1 6.2824 -1.5729 -3.2610 50 1 3.8577 -2.4671 -1.9720 51 1 4.1889 -2.7557 -3.7351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753696343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:42 Heat of formation + Delta-G solvation = 27.481754 kcal Electronic energy + Delta-G solvation = -30574.669935 eV Core-core repulsion = 26861.122956 eV Total energy + Delta-G solvation = -3713.546979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85284 -38.90897 -37.57794 -36.00124 -33.94390 -32.76791 -31.75578 -30.83124 -30.03759 -28.01601 -26.72939 -25.59548 -25.22306 -24.14964 -22.69498 -22.47583 -21.69810 -20.80356 -19.45692 -18.19466 -17.01948 -16.87838 -16.19844 -15.77774 -15.44953 -15.14601 -14.99969 -14.72603 -14.27706 -14.13344 -13.65838 -13.43979 -13.32443 -13.16972 -13.03220 -12.63609 -12.62821 -12.30593 -12.25241 -12.13359 -12.07651 -11.76013 -11.69751 -11.49323 -11.39972 -11.04442 -10.82881 -10.80820 -10.72349 -10.45866 -10.33277 -10.07416 -10.01680 -9.81265 -9.66277 -9.12727 -8.84323 -8.82788 -8.58581 -8.10350 -6.85545 -5.70255 -2.98645 1.41730 1.47605 3.15966 3.42121 3.45168 3.50682 3.52289 3.84259 4.54332 4.61385 4.66482 4.91989 4.96478 5.01512 5.06863 5.15045 5.17141 5.27491 5.30697 5.35717 5.42871 5.48114 5.54906 5.59491 5.64128 5.67612 5.69863 5.87663 5.88956 5.92664 5.98772 6.06955 6.10077 6.13511 6.17104 6.21617 6.24159 6.41536 6.44754 6.48799 6.51658 6.54703 6.55786 6.57756 6.69190 6.79838 6.97177 7.07072 7.11071 7.73486 7.89403 8.47697 8.74047 9.59323 10.18221 10.54488 11.51682 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.004068 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.431943 B = 6880.621230 C = 7769.040429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.098 0.902 4 C 0.144 3.856 5 N -0.726 5.726 6 C -0.240 4.240 7 H 0.067 0.933 8 C -0.011 4.011 9 N -0.926 5.926 10 Si 0.903 3.097 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.284 1.284 14 N -0.594 5.594 15 C 0.073 3.927 16 C 0.551 3.449 17 O -0.534 6.534 18 C -0.096 4.096 19 C -0.064 4.064 20 C -0.074 4.074 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.108 4.108 26 C -0.118 4.118 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.019 0.981 34 H 0.386 0.614 35 H 0.254 0.746 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.063 0.937 50 H 0.086 0.914 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.465 0.100 -15.395 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.116 0.884 4 C 0.016 3.984 5 N -0.371 5.371 6 C -0.371 4.371 7 H 0.085 0.915 8 C -0.207 4.207 9 N -0.574 5.574 10 Si 0.735 3.265 11 H -0.219 1.219 12 H -0.219 1.219 13 H -0.209 1.209 14 N -0.327 5.327 15 C -0.070 4.070 16 C 0.338 3.662 17 O -0.410 6.410 18 C -0.099 4.099 19 C -0.101 4.101 20 C -0.074 4.074 21 C -0.128 4.128 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.126 4.126 26 C -0.155 4.155 27 C -0.175 4.175 28 C -0.171 4.171 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.221 0.779 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.121 0.879 49 H 0.082 0.918 50 H 0.104 0.896 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.289 0.652 -15.135 19.507 hybrid contribution 0.733 -0.439 0.688 1.097 sum -11.556 0.213 -14.447 18.501 Atomic orbital electron populations 1.22065 0.95494 1.01869 1.01945 1.21336 0.93058 0.98448 0.84824 0.88433 1.20991 0.87168 0.96658 0.93623 1.42281 0.99655 1.70054 1.25114 1.19189 0.89439 1.29337 0.99156 0.91456 1.24697 0.96360 1.01665 0.97962 1.69662 1.07031 1.50666 1.30076 0.86248 0.79500 0.78968 0.81792 1.21888 1.21862 1.20934 1.47530 1.50897 1.11948 1.22297 1.21993 1.00970 0.82737 1.01316 1.19639 0.77253 0.86515 0.82748 1.90659 1.58435 1.16207 1.75674 1.21902 0.95070 0.98857 0.94050 1.20675 0.97447 0.94178 0.97842 1.19776 0.94770 0.96539 0.96321 1.20992 0.95647 0.96886 0.99241 1.21060 1.00014 0.94600 0.97873 1.21070 0.96251 0.99486 0.97631 1.21078 0.95966 0.96562 1.00198 1.20975 0.99324 0.94521 0.97822 1.22865 0.93075 1.00992 0.98589 1.22882 0.96334 0.96869 1.01450 1.23181 0.96223 0.95041 1.02654 0.92425 0.91564 0.92717 0.95704 0.96302 0.77926 0.93650 0.91578 0.91688 0.91215 0.90013 0.90370 0.86595 0.86496 0.86545 0.86410 0.86299 0.90299 0.90348 0.87894 0.91830 0.89592 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.17 37.16 0.34 -1.68 16 2 C 0.13 2.20 2.80 -67.92 -0.19 2.01 16 3 H 0.10 1.98 6.90 -51.93 -0.36 1.63 16 4 C 0.14 2.93 5.56 -4.04 -0.02 2.91 16 5 N -0.73 -18.62 5.43 -59.91 -0.33 -18.95 16 6 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 7 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 8 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 10 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 14 N -0.59 -9.77 2.24 -173.94 -0.39 -10.16 16 15 C 0.07 0.98 8.09 59.84 0.48 1.47 16 16 C 0.55 9.91 4.85 -10.98 -0.05 9.85 16 17 O -0.53 -11.79 15.45 5.56 0.09 -11.71 16 18 C -0.10 -1.40 0.30 -154.85 -0.05 -1.44 16 19 C -0.06 -0.75 4.58 -27.89 -0.13 -0.87 16 20 C -0.07 -0.95 4.53 -104.63 -0.47 -1.42 16 21 C -0.11 -1.41 9.14 -39.58 -0.36 -1.77 16 22 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 23 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 24 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 25 C -0.11 -1.33 9.35 -39.58 -0.37 -1.70 16 26 C -0.12 -1.77 6.71 -25.91 -0.17 -1.95 16 27 C -0.14 -2.34 7.81 -25.92 -0.20 -2.55 16 28 C -0.13 -1.96 6.25 -25.92 -0.16 -2.12 16 29 H 0.06 0.67 6.67 -51.93 -0.35 0.32 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 34 H 0.39 10.68 7.06 -40.82 -0.29 10.39 16 35 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 1.03 6.77 -51.93 -0.35 0.68 16 37 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 38 H 0.07 0.78 4.13 -51.93 -0.21 0.56 16 39 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 40 H 0.08 0.81 5.74 -51.93 -0.30 0.51 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 46 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 47 H 0.08 1.38 7.42 -51.92 -0.39 1.00 16 48 H 0.10 2.27 8.14 -51.93 -0.42 1.85 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.09 1.43 5.40 -51.93 -0.28 1.15 16 51 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -33.01 397.51 -10.03 -43.04 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -8.29 Total: 13.35 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.80 Total: -12.01 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.01 Total: -56.15 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.01 -10.03 -43.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753696343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.522 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds