Wall clock time and date at job start Sat Apr 11 2020 02:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47133 * 2 1 4 4 C 1.52996 * 109.47101 * 120.00551 * 2 1 3 5 5 N 1.46506 * 109.47079 * 175.00104 * 4 2 1 6 6 C 1.36930 * 119.99983 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00418 * 359.97438 * 6 5 4 8 8 C 1.38814 * 120.00103 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99837 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00433 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46927 * 89.99717 * 10 8 6 12 12 H 1.48497 * 109.47361 * 210.00059 * 10 8 6 13 13 H 1.48499 * 109.46748 * 330.00373 * 10 8 6 14 14 N 1.46510 * 109.46657 * 240.00189 * 2 1 3 15 15 C 1.46493 * 120.00185 * 299.99763 * 14 2 1 16 16 C 1.34779 * 119.99163 * 120.00141 * 14 2 1 17 17 O 1.21272 * 120.00819 * 357.45179 * 16 14 2 18 18 C 1.50707 * 119.99111 * 177.45400 * 16 14 2 19 19 C 1.52996 * 112.85148 * 76.06798 * 18 16 14 20 20 C 1.50691 * 109.47419 * 54.21496 * 19 18 16 21 21 C 1.38239 * 120.00107 * 264.51944 * 20 19 18 22 22 C 1.38238 * 119.99732 * 179.79049 * 21 20 19 23 23 C 1.38235 * 120.00111 * 0.43402 * 22 21 20 24 24 C 1.38230 * 119.99999 * 359.81361 * 23 22 21 25 25 C 1.38232 * 120.00040 * 359.97438 * 24 23 22 26 26 C 1.53781 * 113.68710 * 207.33266 * 18 16 14 27 27 C 1.53789 * 87.08118 * 89.12577 * 26 18 16 28 28 C 1.53776 * 87.07750 * 25.43032 * 27 26 18 29 29 H 1.08996 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46559 * 299.99840 * 1 2 3 31 31 H 1.08994 * 109.47161 * 59.99407 * 1 2 3 32 32 H 1.09000 * 109.46831 * 294.99436 * 4 2 1 33 33 H 1.09000 * 109.47233 * 54.99917 * 4 2 1 34 34 H 0.97002 * 119.99420 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00023 * 179.97438 * 9 8 6 36 36 H 1.08992 * 109.47255 * 270.78538 * 15 14 2 37 37 H 1.08996 * 109.47204 * 30.78441 * 15 14 2 38 38 H 1.08997 * 109.47208 * 150.78159 * 15 14 2 39 39 H 1.08997 * 109.46887 * 174.21761 * 19 18 16 40 40 H 1.09001 * 109.46787 * 294.21353 * 19 18 16 41 41 H 1.07995 * 119.99892 * 359.97438 * 21 20 19 42 42 H 1.08007 * 119.99403 * 180.27134 * 22 21 20 43 43 H 1.08002 * 119.99477 * 179.83807 * 23 22 21 44 44 H 1.08004 * 119.99697 * 180.02562 * 24 23 22 45 45 H 1.07999 * 119.99843 * 179.97438 * 25 24 23 46 46 H 1.09000 * 113.61835 * 203.67210 * 26 18 16 47 47 H 1.09008 * 113.61380 * 334.58126 * 26 18 16 48 48 H 1.08998 * 113.61528 * 270.88399 * 27 26 18 49 49 H 1.08998 * 113.61132 * 139.98023 * 27 26 18 50 50 H 1.09002 * 113.61302 * 220.01590 * 28 27 26 51 51 H 1.09004 * 113.61298 * 89.11537 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5002 -0.8265 1.1905 6 6 4.1839 -1.4390 2.2065 7 1 3.6469 -1.8443 3.0513 8 6 5.5673 -1.5391 2.1507 9 7 6.2218 -1.0456 1.1208 10 14 6.5001 -2.3740 3.5370 11 1 6.6317 -3.8236 3.2424 12 1 7.8508 -1.7692 3.6595 13 1 5.7593 -2.1932 4.8113 14 7 2.0183 -0.6906 -1.1963 15 6 1.6644 -2.0931 -1.4282 16 6 2.7932 -0.0355 -2.0834 17 8 3.0481 1.1382 -1.9154 18 6 3.3427 -0.7616 -3.2843 19 6 2.2924 -0.9882 -4.3735 20 6 1.6600 0.3287 -4.7432 21 6 0.4712 0.7146 -4.1525 22 6 -0.1067 1.9246 -4.4885 23 6 0.4994 2.7445 -5.4219 24 6 1.6854 2.3563 -6.0164 25 6 2.2656 1.1483 -5.6772 26 6 4.6610 -0.1721 -3.8128 27 6 5.3833 -1.1212 -2.8420 28 6 4.1425 -2.0255 -2.9270 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7518 -0.1584 2.1369 33 1 1.6054 -1.7199 1.2950 34 1 3.9824 -0.4628 0.4314 35 1 7.1885 -1.1152 1.0819 36 1 2.4082 -2.7377 -0.9600 37 1 0.6843 -2.2966 -0.9969 38 1 1.6373 -2.2886 -2.5001 39 1 2.7687 -1.4221 -5.2527 40 1 1.5255 -1.6683 -4.0028 41 1 -0.0043 0.0721 -3.4262 42 1 -1.0331 2.2280 -4.0236 43 1 0.0465 3.6887 -5.6863 44 1 2.1592 2.9971 -6.7453 45 1 3.1920 0.8448 -6.1420 46 1 4.8493 -0.3955 -4.8629 47 1 4.7949 0.8828 -3.5727 48 1 5.5449 -0.6936 -1.8525 49 1 6.2824 -1.5729 -3.2610 50 1 3.8577 -2.4671 -1.9720 51 1 4.1889 -2.7557 -3.7351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753696343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:41 Heat of formation + Delta-G solvation = 8.927414 kcal Electronic energy + Delta-G solvation = -30575.474511 eV Core-core repulsion = 26861.122956 eV Total energy + Delta-G solvation = -3714.351555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.09615 -39.88084 -38.87052 -37.53181 -35.80598 -33.82227 -33.33310 -31.79244 -31.69880 -29.04010 -27.93485 -27.36268 -26.42239 -25.36349 -24.43178 -23.50318 -22.96571 -21.84232 -20.85581 -19.52592 -19.06343 -17.89419 -17.48245 -17.02768 -16.74185 -16.61412 -16.08403 -15.93527 -15.65717 -15.56763 -15.23540 -14.96752 -14.60024 -14.24025 -14.21503 -14.04108 -13.69732 -13.61232 -13.57627 -13.37832 -13.22776 -13.12879 -12.91418 -12.81289 -12.75239 -12.51649 -12.49100 -12.13322 -11.99495 -11.82010 -11.77072 -11.74426 -11.63337 -11.22748 -11.04611 -10.95904 -10.48431 -9.73284 -9.53899 -9.42737 -8.96978 -7.90133 -5.20094 0.52328 0.58513 1.45042 1.47014 1.55197 1.79650 2.15020 2.55955 2.93588 3.41544 3.43677 3.52293 3.71582 3.88160 3.98970 4.02263 4.05961 4.09622 4.19303 4.22025 4.29343 4.33159 4.33836 4.47236 4.52054 4.60525 4.67590 4.72367 4.79136 4.80553 4.82472 4.87364 4.89750 4.92891 4.97726 5.01851 5.11926 5.16922 5.20955 5.24046 5.26207 5.32540 5.35038 5.48892 5.58725 5.63154 5.68059 5.76183 5.78014 6.21123 6.28297 6.58244 7.34827 7.38351 8.11444 8.35857 9.31578 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.004068 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.431943 B = 6880.621230 C = 7769.040429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.131 3.869 3 H 0.059 0.941 4 C 0.143 3.857 5 N -0.740 5.740 6 C -0.247 4.247 7 H 0.074 0.926 8 C -0.070 4.070 9 N -0.959 5.959 10 Si 0.970 3.030 11 H -0.284 1.284 12 H -0.300 1.300 13 H -0.272 1.272 14 N -0.592 5.592 15 C 0.069 3.931 16 C 0.543 3.457 17 O -0.588 6.588 18 C -0.087 4.087 19 C -0.058 4.058 20 C -0.089 4.089 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.149 4.149 28 C -0.119 4.119 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.036 0.964 34 H 0.372 0.628 35 H 0.248 0.752 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.120 0.880 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 -1.760 -16.761 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 H 0.077 0.923 4 C 0.016 3.984 5 N -0.383 5.383 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.262 4.262 9 N -0.609 5.609 10 Si 0.800 3.200 11 H -0.211 1.211 12 H -0.227 1.227 13 H -0.197 1.197 14 N -0.323 5.323 15 C -0.072 4.072 16 C 0.332 3.668 17 O -0.468 6.468 18 C -0.090 4.090 19 C -0.094 4.094 20 C -0.089 4.089 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.146 4.146 27 C -0.187 4.187 28 C -0.156 4.156 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.204 0.796 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.138 0.862 42 H 0.149 0.851 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.151 0.849 46 H 0.138 0.862 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.081 0.919 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.201 -1.246 -16.477 21.788 hybrid contribution 1.292 0.212 1.163 1.751 sum -12.909 -1.035 -15.314 20.056 Atomic orbital electron populations 1.21969 0.91454 1.03655 1.02956 1.21190 0.95967 0.96009 0.84147 0.92284 1.21181 0.84373 0.97701 0.95187 1.42482 1.01847 1.69775 1.24147 1.19582 0.89975 1.28657 0.99627 0.90769 1.25512 0.97376 1.02975 1.00384 1.69863 1.06695 1.52337 1.32016 0.85193 0.77589 0.77937 0.79306 1.21118 1.22655 1.19728 1.47626 1.50276 1.13057 1.21388 1.22195 1.01464 0.80276 1.03296 1.20318 0.76580 0.86126 0.83733 1.90627 1.60290 1.18739 1.77116 1.21804 0.95762 0.97956 0.93507 1.20721 0.96937 0.94197 0.97592 1.19968 0.94992 0.97260 0.96641 1.21194 0.96159 0.97427 0.99586 1.21358 1.00789 0.94673 0.98181 1.21400 0.96393 1.00245 0.97398 1.21420 0.96127 0.96821 1.00579 1.21272 0.99926 0.94816 0.97994 1.22878 0.93060 0.98443 1.00171 1.22747 0.98522 0.98594 0.98844 1.23189 0.94068 0.95288 1.03100 0.90129 0.90501 0.91842 0.95844 0.94610 0.79602 0.94360 0.93806 0.89078 0.88418 0.87027 0.88655 0.86154 0.85068 0.84633 0.84525 0.84879 0.86202 0.93790 0.94237 0.90420 0.91877 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.17 71.98 0.66 -2.77 16 2 C 0.13 4.59 2.80 44.99 0.13 4.72 16 3 H 0.06 2.54 6.90 -2.39 -0.02 2.52 16 4 C 0.14 5.85 5.56 86.38 0.48 6.33 16 5 N -0.74 -39.19 5.43 -343.45 -1.87 -41.05 16 6 C -0.25 -14.08 9.99 84.04 0.84 -13.24 16 7 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 8 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 9 N -0.96 -60.04 13.06 21.65 0.28 -59.76 16 10 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 14 N -0.59 -19.46 2.24 -822.60 -1.85 -21.31 16 15 C 0.07 1.74 8.09 127.77 1.03 2.78 16 16 C 0.54 20.01 4.85 87.66 0.43 20.44 16 17 O -0.59 -27.60 15.45 -3.00 -0.05 -27.64 16 18 C -0.09 -2.46 0.30 -52.40 -0.02 -2.48 16 19 C -0.06 -1.16 4.58 29.84 0.14 -1.02 16 20 C -0.09 -2.11 4.53 -19.87 -0.09 -2.20 16 21 C -0.13 -3.06 9.14 22.27 0.20 -2.85 16 22 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 23 C -0.14 -2.99 10.05 22.27 0.22 -2.77 16 24 C -0.13 -2.89 10.05 22.27 0.22 -2.67 16 25 C -0.12 -2.80 9.35 22.27 0.21 -2.59 16 26 C -0.11 -3.23 6.71 31.12 0.21 -3.03 16 27 C -0.15 -5.24 7.81 31.12 0.24 -5.00 16 28 C -0.12 -3.34 6.25 31.12 0.19 -3.15 16 29 H 0.08 1.59 6.67 -2.39 -0.02 1.57 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 34 H 0.37 21.75 7.06 -92.71 -0.65 21.10 16 35 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.04 1.33 6.77 -2.39 -0.02 1.31 16 37 H 0.09 1.80 6.43 -2.39 -0.02 1.79 16 38 H 0.10 1.88 4.13 -2.39 -0.01 1.87 16 39 H 0.11 1.63 8.04 -2.39 -0.02 1.61 16 40 H 0.10 1.59 5.74 -2.39 -0.01 1.57 16 41 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 45 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 46 H 0.12 2.58 8.04 -2.39 -0.02 2.56 16 47 H 0.04 1.63 7.42 -2.38 -0.02 1.61 16 48 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.06 2.10 5.40 -2.39 -0.01 2.08 16 51 H 0.13 2.44 8.10 -2.39 -0.02 2.42 16 Total: -1.00 -77.47 397.51 4.61 -72.86 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: 0.26 Total: 43.74 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 5.79 Total: -15.93 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -3.43 Total: -122.12 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.05 Total: -27.64 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -77.47 4.61 -72.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753696343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.788 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds