Wall clock time and date at job start Sat Apr 11 2020 02:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46914 * 2 1 4 4 C 1.53001 * 109.47025 * 240.00435 * 2 1 3 5 5 N 1.46500 * 109.47126 * 184.99987 * 4 2 1 6 6 C 1.36932 * 120.00125 * 179.97438 * 5 4 2 7 7 H 1.08006 * 120.00187 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00175 * 180.02562 * 6 5 4 9 9 N 1.31627 * 119.99873 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00384 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47168 * 89.99910 * 10 8 6 12 12 H 1.48500 * 109.47317 * 210.00095 * 10 8 6 13 13 H 1.48504 * 109.46615 * 329.99593 * 10 8 6 14 14 N 1.46496 * 109.46997 * 120.00087 * 2 1 3 15 15 C 1.46503 * 119.99599 * 60.00473 * 14 2 1 16 16 C 1.34774 * 120.00191 * 239.99754 * 14 2 1 17 17 O 1.21283 * 119.99922 * 355.00571 * 16 14 2 18 18 C 1.50698 * 119.99937 * 175.28241 * 16 14 2 19 19 C 1.53002 * 112.84712 * 295.83942 * 18 16 14 20 20 C 1.50695 * 109.47482 * 304.53149 * 19 18 16 21 21 C 1.38233 * 119.99828 * 274.59645 * 20 19 18 22 22 C 1.38240 * 120.00018 * 179.78444 * 21 20 19 23 23 C 1.38240 * 119.99514 * 0.44526 * 22 21 20 24 24 C 1.38232 * 120.00154 * 359.80438 * 23 22 21 25 25 C 1.38232 * 119.99873 * 94.86717 * 20 19 18 26 26 C 1.53781 * 113.61422 * 164.53471 * 18 16 14 27 27 C 1.53780 * 87.08125 * 220.01741 * 26 18 16 28 28 C 1.53780 * 113.61497 * 67.03686 * 18 16 14 29 29 H 1.08996 * 109.46864 * 299.99831 * 1 2 3 30 30 H 1.09000 * 109.46670 * 59.99579 * 1 2 3 31 31 H 1.08995 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47232 * 305.00006 * 4 2 1 33 33 H 1.08999 * 109.47117 * 64.99916 * 4 2 1 34 34 H 0.97005 * 119.99565 * 359.97438 * 5 4 2 35 35 H 0.97003 * 119.99822 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.46674 * 274.44251 * 15 14 2 37 37 H 1.08995 * 109.47593 * 34.44135 * 15 14 2 38 38 H 1.09007 * 109.47089 * 154.44957 * 15 14 2 39 39 H 1.09002 * 109.46967 * 64.53557 * 19 18 16 40 40 H 1.09009 * 109.46817 * 184.53024 * 19 18 16 41 41 H 1.08004 * 120.00382 * 359.97438 * 21 20 19 42 42 H 1.08001 * 120.00645 * 180.27259 * 22 21 20 43 43 H 1.07999 * 119.99644 * 179.83698 * 23 22 21 44 44 H 1.08003 * 120.00166 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.00344 * 359.97438 * 25 20 19 46 46 H 1.08996 * 113.61429 * 334.57045 * 26 18 16 47 47 H 1.09007 * 113.61347 * 105.46826 * 26 18 16 48 48 H 1.09003 * 113.61603 * 270.88317 * 27 26 18 49 49 H 1.08998 * 113.61411 * 139.98547 * 27 26 18 50 50 H 1.09002 * 113.61348 * 254.52458 * 28 18 16 51 51 H 1.08997 * 113.61889 * 25.43215 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1838 -1.4387 -2.2068 7 1 3.6467 -1.8446 -3.0514 8 6 5.5671 -1.5388 -2.1510 9 7 6.2217 -1.0446 -1.1215 10 14 6.4999 -2.3748 -3.5369 11 1 6.8626 -1.3686 -4.5670 12 1 7.7350 -2.9979 -2.9970 13 1 5.6434 -3.4227 -4.1483 14 7 2.0183 -0.6906 1.1961 15 6 1.6644 -2.0932 1.4278 16 6 2.7932 -0.0357 2.0833 17 8 3.1611 1.0957 1.8479 18 6 3.2076 -0.7115 3.3649 19 6 2.0224 -1.0307 4.2784 20 6 1.2448 0.2309 4.5518 21 6 1.6301 1.0712 5.5796 22 6 0.9195 2.2307 5.8275 23 6 -0.1819 2.5453 5.0535 24 6 -0.5701 1.7024 4.0290 25 6 0.1431 0.5450 3.7783 26 6 4.3703 -0.0078 4.0844 27 6 4.9209 -1.4090 4.3978 28 6 4.1607 -1.8999 3.1544 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7197 -1.2953 33 1 1.7517 -0.1582 -2.1370 34 1 3.9824 -0.4621 -0.4319 35 1 7.1885 -1.1142 -1.0827 36 1 0.6983 -2.1460 1.9297 37 1 1.6069 -2.6160 0.4731 38 1 2.4247 -2.5613 2.0532 39 1 1.3739 -1.7588 3.7911 40 1 2.3890 -1.4425 5.2187 41 1 2.4881 0.8233 6.1870 42 1 1.2230 2.8895 6.6277 43 1 -0.7386 3.4498 5.2489 44 1 -1.4303 1.9483 3.4240 45 1 -0.1603 -0.1135 2.9778 46 1 5.0083 0.5732 3.4184 47 1 4.0630 0.5487 4.9699 48 1 4.5458 -1.8267 5.3321 49 1 6.0044 -1.4833 4.3047 50 1 3.6841 -2.8709 3.2892 51 1 4.7413 -1.8363 2.2342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753696344.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:44 Heat of formation + Delta-G solvation = 5.275442 kcal Electronic energy + Delta-G solvation = -30482.892015 eV Core-core repulsion = 26768.382098 eV Total energy + Delta-G solvation = -3714.509917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07311 -39.89085 -39.02917 -37.56679 -35.81602 -33.76406 -33.22009 -31.81244 -31.72390 -28.82950 -27.87701 -27.40493 -26.57734 -25.88255 -24.47152 -23.42873 -22.63808 -22.18796 -20.41600 -19.49048 -19.08862 -18.12678 -17.43248 -17.32474 -16.72348 -16.49279 -16.15523 -16.02621 -15.73102 -15.42269 -15.21129 -15.12345 -14.55436 -14.24097 -14.03845 -13.98312 -13.72981 -13.63705 -13.38182 -13.31817 -13.25742 -13.14425 -13.02985 -12.86232 -12.77496 -12.51746 -12.46899 -12.15742 -12.06986 -11.95476 -11.79360 -11.76149 -11.64611 -11.39592 -11.07868 -10.97328 -10.36992 -9.74021 -9.53780 -9.44684 -8.99451 -7.93059 -5.23180 0.50593 0.57224 1.43801 1.46499 1.54679 1.82699 2.16938 2.54685 2.91446 3.39103 3.42988 3.50834 3.71874 3.86354 3.88186 3.97460 4.04736 4.09845 4.19607 4.21920 4.30664 4.32079 4.36450 4.47800 4.50352 4.61411 4.66182 4.73158 4.77793 4.79221 4.82345 4.86943 4.90674 4.93668 4.94182 5.01859 5.06580 5.10360 5.17047 5.21439 5.23332 5.27172 5.31982 5.46837 5.54916 5.62744 5.67701 5.76730 5.78377 6.19798 6.25984 6.60443 7.32346 7.39722 8.09739 8.33560 9.29607 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.004052 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.763712 B = 6907.987551 C = 7915.630293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.131 3.869 3 H 0.057 0.943 4 C 0.142 3.858 5 N -0.740 5.740 6 C -0.245 4.245 7 H 0.077 0.923 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.974 3.026 11 H -0.292 1.292 12 H -0.295 1.295 13 H -0.265 1.265 14 N -0.591 5.591 15 C 0.067 3.933 16 C 0.530 3.470 17 O -0.594 6.594 18 C -0.088 4.088 19 C -0.049 4.049 20 C -0.091 4.091 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.135 4.135 24 C -0.132 4.132 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.125 4.125 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.023 0.977 34 H 0.372 0.628 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.123 0.877 46 H 0.046 0.954 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.064 0.936 50 H 0.104 0.896 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 -1.978 17.213 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 H 0.075 0.925 4 C 0.014 3.986 5 N -0.383 5.383 6 C -0.376 4.376 7 H 0.095 0.905 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.803 3.197 11 H -0.219 1.219 12 H -0.222 1.222 13 H -0.190 1.190 14 N -0.322 5.322 15 C -0.074 4.074 16 C 0.320 3.680 17 O -0.474 6.474 18 C -0.091 4.091 19 C -0.086 4.086 20 C -0.091 4.091 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.158 4.158 27 C -0.161 4.161 28 C -0.162 4.162 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.204 0.796 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.141 0.859 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.138 0.862 49 H 0.083 0.917 50 H 0.123 0.877 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.402 -1.509 16.902 22.917 hybrid contribution 1.300 0.300 -1.196 1.791 sum -14.102 -1.208 15.706 21.143 Atomic orbital electron populations 1.21978 0.91417 1.03655 1.02956 1.21161 0.95883 0.95962 0.84256 0.92453 1.21193 0.84271 0.97769 0.95319 1.42514 1.01931 1.69724 1.24131 1.19639 0.89999 1.28398 0.99591 0.90533 1.25576 0.97460 1.03118 1.00514 1.69891 1.06764 1.52775 1.32324 0.85141 0.77992 0.78113 0.78488 1.21906 1.22202 1.18999 1.47636 1.50222 1.12967 1.21377 1.22168 1.01927 0.80473 1.02873 1.20871 0.76202 0.85400 0.85532 1.90636 1.56114 1.21916 1.78779 1.22098 0.96265 0.98251 0.92514 1.20507 0.93326 0.94877 0.99909 1.19949 0.95757 0.97370 0.96001 1.21310 0.99851 0.94900 0.98057 1.21434 0.95814 0.97294 1.00386 1.21418 0.97747 1.00081 0.96069 1.21374 1.00550 0.94848 0.98240 1.21256 0.95892 0.97981 0.99144 1.22802 0.95755 0.97400 0.99796 1.22858 1.00132 0.94672 0.98392 1.22940 0.97030 0.97480 0.98769 0.91699 0.90582 0.90246 0.94470 0.95870 0.79648 0.94321 0.89789 0.91698 0.89824 0.88475 0.87090 0.84720 0.84434 0.84599 0.85013 0.85897 0.93505 0.89500 0.86157 0.91712 0.87745 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.19 71.98 0.66 -2.78 16 2 C 0.13 4.65 2.80 44.99 0.13 4.78 16 3 H 0.06 2.49 6.91 -2.39 -0.02 2.48 16 4 C 0.14 5.86 5.49 86.38 0.47 6.33 16 5 N -0.74 -39.81 5.43 -343.45 -1.87 -41.67 16 6 C -0.24 -14.11 9.99 84.03 0.84 -13.27 16 7 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 8 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 9 N -0.97 -61.98 13.06 21.65 0.28 -61.70 16 10 Si 0.97 47.44 29.55 68.60 2.03 49.47 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 N -0.59 -19.54 2.24 -822.58 -1.85 -21.39 16 15 C 0.07 1.70 8.07 127.77 1.03 2.73 16 16 C 0.53 19.89 5.22 87.66 0.46 20.34 16 17 O -0.59 -28.78 15.46 -3.04 -0.05 -28.83 16 18 C -0.09 -2.48 0.30 -52.40 -0.02 -2.50 16 19 C -0.05 -0.97 4.48 29.85 0.13 -0.84 16 20 C -0.09 -2.07 4.56 -19.87 -0.09 -2.16 16 21 C -0.12 -2.68 8.80 22.27 0.20 -2.48 16 22 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 23 C -0.14 -2.82 10.05 22.27 0.22 -2.59 16 24 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 25 C -0.12 -2.92 9.13 22.27 0.20 -2.71 16 26 C -0.12 -3.52 6.79 31.12 0.21 -3.31 16 27 C -0.12 -2.86 7.73 31.12 0.24 -2.61 16 28 C -0.12 -3.48 5.55 31.12 0.17 -3.30 16 29 H 0.06 1.47 7.35 -2.39 -0.02 1.46 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.59 7.67 -2.39 -0.02 1.57 16 32 H 0.04 1.43 6.91 -2.39 -0.02 1.41 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.37 22.21 7.07 -92.70 -0.65 21.56 16 35 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.08 1.47 7.40 -2.39 -0.02 1.45 16 37 H 0.06 1.78 6.55 -2.39 -0.02 1.76 16 38 H 0.08 2.02 4.02 -2.38 -0.01 2.01 16 39 H 0.10 1.61 5.71 -2.39 -0.01 1.60 16 40 H 0.11 1.59 7.29 -2.38 -0.02 1.57 16 41 H 0.13 2.39 7.01 -2.91 -0.02 2.37 16 42 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.12 2.66 7.26 -2.91 -0.02 2.64 16 46 H 0.05 1.81 7.68 -2.39 -0.02 1.79 16 47 H 0.09 2.16 6.03 -2.38 -0.01 2.15 16 48 H 0.12 1.82 7.61 -2.39 -0.02 1.81 16 49 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.10 2.20 7.03 -2.39 -0.02 2.18 16 51 H 0.05 1.87 8.09 -2.39 -0.02 1.85 16 Total: -1.00 -79.35 393.13 4.60 -74.75 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: 0.27 Total: 42.89 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 5.78 Total: -13.52 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -3.43 Total: -124.76 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.05 Total: -28.83 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -79.35 4.60 -74.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753696344.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.022 kcal (2) G-P(sol) polarization free energy of solvation -79.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds