Wall clock time and date at job start Sat Apr 11 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47256 * 2 1 4 4 C 1.53000 * 109.46980 * 119.99966 * 2 1 3 5 5 N 1.46501 * 109.47052 * 174.99665 * 4 2 1 6 6 C 1.36937 * 119.99786 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00054 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99744 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99886 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00124 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47022 * 90.00606 * 10 8 6 12 12 H 1.48504 * 109.47074 * 209.99985 * 10 8 6 13 13 H 1.48495 * 109.47224 * 330.00229 * 10 8 6 14 14 N 1.46499 * 109.47011 * 239.99904 * 2 1 3 15 15 C 1.46510 * 120.00076 * 299.99981 * 14 2 1 16 16 C 1.34771 * 120.00339 * 120.00408 * 14 2 1 17 17 O 1.21281 * 119.99886 * 359.97438 * 16 14 2 18 18 C 1.50698 * 120.00426 * 179.97438 * 16 14 2 19 19 C 1.52999 * 109.47278 * 179.97438 * 18 16 14 20 20 C 1.53787 * 113.61610 * 185.00089 * 19 18 16 21 21 C 1.53784 * 87.07923 * 270.88171 * 20 19 18 22 22 C 1.50699 * 113.61308 * 220.01868 * 21 20 19 23 23 C 1.38234 * 119.99931 * 59.72562 * 22 21 20 24 24 C 1.38238 * 119.99392 * 179.78936 * 23 22 21 25 25 C 1.38231 * 120.00506 * 0.44089 * 24 23 22 26 26 C 1.38233 * 119.99715 * 359.81091 * 25 24 23 27 27 C 1.38233 * 120.00150 * 359.97438 * 26 25 24 28 28 C 1.53779 * 87.08045 * 334.56667 * 21 20 19 29 29 H 1.09000 * 109.46981 * 300.00185 * 1 2 3 30 30 H 1.09002 * 109.46596 * 59.99774 * 1 2 3 31 31 H 1.08998 * 109.47256 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47307 * 294.99690 * 4 2 1 33 33 H 1.09006 * 109.46944 * 55.00093 * 4 2 1 34 34 H 0.96999 * 120.00033 * 0.02562 * 5 4 2 35 35 H 0.96998 * 119.99830 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47183 * 270.00315 * 15 14 2 37 37 H 1.08997 * 109.46528 * 30.00165 * 15 14 2 38 38 H 1.08997 * 109.46829 * 150.00387 * 15 14 2 39 39 H 1.08996 * 109.47299 * 59.99863 * 18 16 14 40 40 H 1.09004 * 109.46915 * 299.99429 * 18 16 14 41 41 H 1.08997 * 112.90642 * 316.24681 * 19 18 16 42 42 H 1.09004 * 113.61202 * 25.42923 * 20 19 18 43 43 H 1.08994 * 113.61447 * 156.33355 * 20 19 18 44 44 H 1.09002 * 113.61478 * 89.11632 * 21 20 19 45 45 H 1.07998 * 120.00175 * 359.97438 * 23 22 21 46 46 H 1.08003 * 119.99654 * 180.27849 * 24 23 22 47 47 H 1.07997 * 120.00034 * 179.83925 * 25 24 23 48 48 H 1.07997 * 120.00096 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.00270 * 179.97438 * 27 26 25 50 50 H 1.09006 * 113.61307 * 270.88660 * 28 21 20 51 51 H 1.08999 * 113.69146 * 139.99146 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8265 1.1906 6 6 4.1838 -1.4380 2.2072 7 1 3.6468 -1.8431 3.0521 8 6 5.5673 -1.5372 2.1519 9 7 6.2245 -2.1255 3.1288 10 14 6.4962 -0.8371 0.6902 11 1 6.8570 0.5770 0.9642 12 1 7.7323 -1.6285 0.4641 13 1 5.6378 -0.9035 -0.5197 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0933 -1.4280 16 6 2.7932 -0.0358 -2.0833 17 8 3.0859 1.1255 -1.8916 18 6 3.2960 -0.7463 -3.3135 19 6 4.1455 0.2155 -4.1467 20 6 4.6084 -0.3759 -5.4887 21 6 5.8440 -0.9032 -4.7403 22 6 7.1235 -0.7823 -5.5272 23 6 7.5631 0.4599 -5.9451 24 6 8.7391 0.5712 -6.6632 25 6 9.4707 -0.5605 -6.9712 26 6 9.0284 -1.8032 -6.5577 27 6 7.8547 -1.9141 -5.8358 28 6 5.6274 0.2417 -3.7368 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 3.9824 -0.4623 0.4319 35 1 7.1913 -2.1945 3.0903 36 1 2.4157 -2.7378 -0.9716 37 1 0.6904 -2.3002 -0.9846 38 1 1.6238 -2.2853 -2.5001 39 1 2.4485 -1.0893 -3.9069 40 1 3.9018 -1.6025 -3.0164 41 1 3.6997 1.2060 -4.2367 42 1 3.9572 -1.1643 -5.8662 43 1 4.8420 0.3778 -6.2405 44 1 5.7032 -1.8943 -4.3090 45 1 6.9894 1.3436 -5.7081 46 1 9.0849 1.5421 -6.9859 47 1 10.3881 -0.4737 -7.5344 48 1 9.6001 -2.6873 -6.7979 49 1 7.5089 -2.8850 -5.5131 50 1 6.1396 1.1644 -4.0099 51 1 5.7987 -0.0466 -2.6997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753699951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:49 Heat of formation + Delta-G solvation = -0.065131 kcal Electronic energy + Delta-G solvation = -28882.895080 eV Core-core repulsion = 25168.153579 eV Total energy + Delta-G solvation = -3714.741501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60415 -40.65381 -38.95686 -37.78930 -35.95523 -33.88816 -32.86309 -32.13870 -31.79002 -29.81490 -27.82185 -27.56682 -26.64865 -25.66246 -24.15232 -23.52864 -22.73491 -21.93692 -20.42316 -19.53599 -19.27898 -18.38467 -17.97852 -17.12796 -16.84045 -16.71648 -16.30814 -16.09496 -15.85367 -15.37323 -15.19990 -14.86811 -14.70276 -14.42256 -14.21911 -14.16648 -14.04461 -13.85733 -13.65374 -13.51856 -13.37054 -13.23805 -13.07889 -13.00672 -12.93530 -12.56380 -12.43447 -12.30327 -12.16871 -11.99508 -11.90767 -11.75964 -11.48922 -11.29944 -11.11496 -10.98983 -10.71580 -9.82385 -9.59295 -9.54557 -9.34867 -8.10746 -5.41218 0.43825 0.49458 1.23311 1.29428 1.33057 1.66446 2.07688 2.36703 2.84187 3.21476 3.41909 3.57407 3.59227 3.65731 3.81380 3.95281 3.99230 4.07487 4.09211 4.15986 4.26510 4.28012 4.32836 4.37764 4.46438 4.53791 4.59407 4.62579 4.67390 4.78098 4.78891 4.79739 4.83508 4.84176 4.90249 5.03107 5.04445 5.09749 5.12343 5.14440 5.16138 5.26612 5.31424 5.43896 5.58728 5.61971 5.63094 5.71155 5.77513 6.12716 6.14349 6.46643 7.00585 7.22595 7.78832 7.96233 9.10682 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.003748 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.681574 B = 7469.232751 C = 9256.196864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.125 3.875 3 H 0.071 0.929 4 C 0.144 3.856 5 N -0.756 5.756 6 C -0.225 4.225 7 H 0.066 0.934 8 C -0.052 4.052 9 N -0.977 5.977 10 Si 0.941 3.059 11 H -0.294 1.294 12 H -0.290 1.290 13 H -0.261 1.261 14 N -0.604 5.604 15 C 0.072 3.928 16 C 0.502 3.498 17 O -0.587 6.587 18 C -0.118 4.118 19 C -0.094 4.094 20 C -0.100 4.100 21 C -0.075 4.075 22 C -0.080 4.080 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.133 4.133 28 C -0.141 4.141 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.360 0.640 35 H 0.258 0.742 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.129 0.871 50 H 0.084 0.916 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 0.414 -25.209 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.021 3.979 3 H 0.090 0.910 4 C 0.017 3.983 5 N -0.401 5.401 6 C -0.356 4.356 7 H 0.084 0.916 8 C -0.245 4.245 9 N -0.628 5.628 10 Si 0.770 3.230 11 H -0.222 1.222 12 H -0.217 1.217 13 H -0.186 1.186 14 N -0.337 5.337 15 C -0.070 4.070 16 C 0.292 3.708 17 O -0.468 6.468 18 C -0.157 4.157 19 C -0.113 4.113 20 C -0.137 4.137 21 C -0.093 4.093 22 C -0.080 4.080 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.151 4.151 28 C -0.178 4.178 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.193 0.807 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.143 0.857 46 H 0.156 0.844 47 H 0.159 0.841 48 H 0.157 0.843 49 H 0.147 0.853 50 H 0.102 0.898 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.309 0.879 -24.901 25.703 hybrid contribution 1.294 0.467 0.221 1.393 sum -5.016 1.346 -24.681 25.221 Atomic orbital electron populations 1.21957 0.91160 1.03731 1.03183 1.21296 0.96337 0.96496 0.83731 0.91042 1.21227 0.82766 0.98453 0.95856 1.42718 1.03493 1.70713 1.23211 1.19082 0.89945 1.27691 0.98877 0.91561 1.25248 0.97183 1.01974 1.00046 1.69834 1.07412 1.50942 1.34638 0.85646 0.78623 0.77452 0.81248 1.22171 1.21660 1.18645 1.47953 1.50274 1.13637 1.21804 1.22005 1.01874 0.79517 1.03607 1.21331 0.77189 0.86740 0.85580 1.90649 1.58908 1.19281 1.77940 1.21596 1.01881 0.98796 0.93410 1.22007 0.94001 0.99199 0.96045 1.22960 0.95131 1.00739 0.94849 1.21616 0.92708 0.99074 0.95899 1.19916 0.96416 0.93741 0.97966 1.21209 0.97399 0.97326 0.98994 1.21432 0.94962 0.99686 0.98463 1.21460 1.00647 0.92560 1.00587 1.21451 0.96373 0.98617 0.98046 1.21331 0.95793 0.98603 0.99390 1.23164 0.97708 0.99156 0.97766 0.90359 0.91561 0.90291 0.94762 0.94001 0.80688 0.93322 0.93942 0.88874 0.87994 0.84751 0.88631 0.90546 0.88717 0.89025 0.88342 0.85742 0.84433 0.84118 0.84282 0.85275 0.89779 0.94955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.17 71.98 0.66 -2.34 16 2 C 0.13 3.90 2.80 44.99 0.13 4.03 16 3 H 0.07 2.65 6.90 -2.39 -0.02 2.64 16 4 C 0.14 5.48 5.56 86.38 0.48 5.96 16 5 N -0.76 -37.27 5.24 -343.44 -1.80 -39.07 16 6 C -0.22 -13.20 10.47 84.03 0.88 -12.32 16 7 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 8 C -0.05 -3.22 5.50 84.86 0.47 -2.75 16 9 N -0.98 -64.03 13.97 21.65 0.30 -63.73 16 10 Si 0.94 49.80 27.73 68.60 1.90 51.70 16 11 H -0.29 -15.96 7.11 99.48 0.71 -15.25 16 12 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 13 H -0.26 -12.98 6.32 99.48 0.63 -12.35 16 14 N -0.60 -17.48 2.24 -822.58 -1.85 -19.33 16 15 C 0.07 1.51 9.40 127.77 1.20 2.71 16 16 C 0.50 15.96 7.38 87.66 0.65 16.61 16 17 O -0.59 -23.68 15.08 -3.03 -0.05 -23.73 16 18 C -0.12 -2.67 3.93 29.85 0.12 -2.56 16 19 C -0.09 -2.20 3.34 -10.27 -0.03 -2.24 16 20 C -0.10 -1.74 7.14 31.12 0.22 -1.52 16 21 C -0.07 -1.66 3.63 -11.01 -0.04 -1.70 16 22 C -0.08 -1.81 5.29 -19.87 -0.11 -1.92 16 23 C -0.13 -2.83 8.60 22.27 0.19 -2.64 16 24 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 25 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 26 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 27 C -0.13 -2.81 9.71 22.27 0.22 -2.59 16 28 C -0.14 -3.95 6.99 31.12 0.22 -3.73 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.37 6.66 -2.39 -0.02 1.36 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.51 7.84 -2.38 -0.02 1.49 16 34 H 0.36 18.18 4.93 -92.71 -0.46 17.73 16 35 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.56 6.43 -2.39 -0.02 1.54 16 38 H 0.10 1.39 6.44 -2.39 -0.02 1.37 16 39 H 0.13 1.93 7.40 -2.39 -0.02 1.91 16 40 H 0.10 2.21 7.35 -2.38 -0.02 2.19 16 41 H 0.08 2.00 7.68 -2.39 -0.02 1.98 16 42 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.09 1.50 7.71 -2.39 -0.02 1.48 16 44 H 0.10 2.13 7.67 -2.39 -0.02 2.11 16 45 H 0.12 2.50 6.68 -2.91 -0.02 2.48 16 46 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 47 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 48 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 49 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 50 H 0.08 2.29 6.32 -2.38 -0.02 2.28 16 51 H 0.03 1.14 7.90 -2.39 -0.02 1.12 16 Total: -1.00 -78.97 401.03 4.81 -74.16 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.38 Total: 33.48 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 5.92 Total: -13.50 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -3.34 Total: -122.12 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 1.90 Total: 51.70 kcal Total: -78.97 4.81 -74.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.095 kcal (2) G-P(sol) polarization free energy of solvation -78.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds