Wall clock time and date at job start Sat Apr 11 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21277 * 120.00124 * 2 1 4 4 N 1.34772 * 119.99781 * 179.72283 * 2 1 3 5 5 C 1.46505 * 120.00015 * 180.27475 * 4 2 1 6 6 H 1.09000 * 109.75890 * 35.73879 * 5 4 2 7 7 C 1.53042 * 109.76794 * 274.99904 * 5 4 2 8 8 C 1.50802 * 109.66437 * 287.64957 * 7 5 4 9 9 C 1.38617 * 118.12614 * 164.55644 * 8 7 5 10 10 C 1.38044 * 120.48713 * 179.76212 * 9 8 7 11 11 C 1.38312 * 119.89119 * 359.97371 * 10 9 8 12 12 C 1.37806 * 119.95161 * 0.11435 * 11 10 9 13 13 C 1.38369 * 122.01407 * 344.50805 * 8 7 5 14 14 N 1.39417 * 122.96224 * 0.53476 * 13 8 7 15 15 C 1.46898 * 111.00135 * 214.39579 * 14 13 8 16 16 C 1.52992 * 109.47315 * 177.26595 * 15 14 13 17 17 C 1.53003 * 109.47321 * 280.06913 * 16 15 14 18 18 C 1.53002 * 109.47326 * 40.06668 * 16 15 14 19 19 C 1.53005 * 109.47497 * 160.06724 * 16 15 14 20 20 C 1.50700 * 109.47172 * 179.97438 * 19 16 15 21 21 H 1.08001 * 119.99826 * 0.02562 * 20 19 16 22 22 C 1.37872 * 119.99739 * 179.97438 * 20 19 16 23 23 N 1.31519 * 120.00305 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99917 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47313 * 60.00616 * 24 22 20 26 26 H 1.48501 * 109.47314 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47121 * 300.00169 * 24 22 20 28 28 C 1.46425 * 113.12033 * 339.94081 * 14 13 8 29 29 H 1.09001 * 109.47212 * 89.99841 * 1 2 3 30 30 H 1.08996 * 109.47131 * 209.99978 * 1 2 3 31 31 H 1.08999 * 109.47328 * 330.00436 * 1 2 3 32 32 H 0.97002 * 120.00145 * 0.27567 * 4 2 1 33 33 H 1.09007 * 109.43841 * 47.70799 * 7 5 4 34 34 H 1.09000 * 109.43776 * 167.59069 * 7 5 4 35 35 H 1.07995 * 119.75212 * 359.74391 * 9 8 7 36 36 H 1.08006 * 120.05660 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.02326 * 180.08912 * 11 10 9 38 38 H 1.08002 * 119.79298 * 180.02562 * 12 11 10 39 39 H 1.09008 * 109.47066 * 297.26337 * 15 14 13 40 40 H 1.09003 * 109.47339 * 57.26191 * 15 14 13 41 41 H 1.08993 * 109.47095 * 83.87958 * 17 16 15 42 42 H 1.09002 * 109.47309 * 203.88723 * 17 16 15 43 43 H 1.09002 * 109.46566 * 323.88298 * 17 16 15 44 44 H 1.09004 * 109.46882 * 68.44422 * 18 16 15 45 45 H 1.08994 * 109.47274 * 188.45168 * 18 16 15 46 46 H 1.09004 * 109.46590 * 308.45051 * 18 16 15 47 47 H 1.09004 * 109.46768 * 299.99925 * 19 16 15 48 48 H 1.08995 * 109.46824 * 59.99991 * 19 16 15 49 49 H 0.97000 * 119.99967 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.60888 * 293.61554 * 28 14 13 51 51 H 1.09002 * 109.60284 * 173.11815 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0056 5 6 3.6459 -1.1672 0.0117 6 1 4.0119 -0.3331 0.6104 7 6 4.1694 -1.0452 -1.4212 8 6 3.9389 -2.3408 -2.1577 9 6 4.0399 -2.3335 -3.5402 10 6 3.8433 -3.4930 -4.2629 11 6 3.5436 -4.6725 -3.6056 12 6 3.4397 -4.6871 -2.2316 13 6 3.6349 -3.5170 -1.4954 14 7 3.5078 -3.5960 -0.1093 15 6 3.9857 -4.8922 0.3902 16 6 3.8943 -4.9155 1.9172 17 6 5.0903 -4.1689 2.5113 18 6 2.5973 -4.2359 2.3609 19 6 3.9037 -6.3652 2.4067 20 6 3.8142 -6.3880 3.9108 21 1 3.7560 -5.4614 4.4625 22 6 3.8057 -7.5920 4.5826 23 7 3.8761 -8.7205 3.9108 24 14 3.6941 -7.6204 6.4471 25 1 2.4354 -6.9605 6.8778 26 1 3.7034 -9.0274 6.9221 27 1 4.8552 -6.8962 7.0236 28 6 4.1622 -2.4897 0.5921 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6958 -2.0072 0.0057 33 1 3.6433 -0.2388 -1.9322 34 1 5.2368 -0.8250 -1.3999 35 1 4.2740 -1.4137 -4.0555 36 1 3.9233 -3.4793 -5.3399 37 1 3.3907 -5.5812 -4.1689 38 1 3.2060 -5.6097 -1.7209 39 1 3.3691 -5.6906 -0.0230 40 1 5.0221 -5.0392 0.0859 41 1 4.8772 -3.1002 2.5327 42 1 5.2727 -4.5235 3.5257 43 1 5.9731 -4.3511 1.8985 44 1 1.7461 -4.8493 2.0652 45 1 2.6012 -4.1179 3.4444 46 1 2.5206 -3.2563 1.8889 47 1 3.0515 -6.8971 1.9835 48 1 4.8277 -6.8493 2.0906 49 1 3.8704 -9.5675 4.3835 50 1 5.2412 -2.5545 0.4513 51 1 3.9259 -2.5398 1.6550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378563321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:39 Heat of formation + Delta-G solvation = 0.686327 kcal Electronic energy + Delta-G solvation = -29924.632914 eV Core-core repulsion = 26209.923998 eV Total energy + Delta-G solvation = -3714.708916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.16233 -39.29945 -37.99260 -36.07273 -34.36601 -32.74732 -32.29471 -30.53656 -29.69609 -28.69855 -27.11398 -26.99099 -26.53955 -24.08991 -23.21450 -22.82711 -21.42346 -20.80265 -19.35546 -18.07787 -17.29485 -16.76873 -16.35183 -16.19030 -15.98843 -15.21643 -15.07418 -14.71720 -14.41933 -14.26315 -14.03818 -13.79609 -13.52061 -13.29511 -13.26039 -12.96851 -12.79523 -12.64054 -12.31916 -12.23566 -12.13493 -11.90569 -11.66156 -11.37066 -11.26373 -11.10418 -10.94456 -10.80902 -10.61701 -10.56215 -10.20065 -10.05724 -9.91084 -9.86119 -9.70935 -9.18272 -9.00992 -8.91336 -8.69782 -8.38409 -7.56694 -6.03221 -4.04025 1.41791 1.47022 2.61773 3.18869 3.29981 3.35403 3.37071 3.66213 4.01691 4.42863 4.50743 4.73102 4.82096 4.83226 4.97951 5.08326 5.14182 5.27578 5.29885 5.32522 5.36919 5.40704 5.49148 5.49585 5.57276 5.64070 5.66511 5.69708 5.79725 5.88409 5.94576 6.02409 6.07208 6.20091 6.24942 6.32763 6.38769 6.45852 6.49637 6.57371 6.61610 6.73257 6.86469 7.03373 7.09494 7.14311 7.23552 7.44507 7.56438 7.59981 7.73748 7.95307 8.22339 8.38403 9.00637 9.59296 11.08168 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.003691 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.243471 B = 7583.354890 C = 9020.973731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.558 6.558 4 N -0.710 5.710 5 C 0.142 3.858 6 H 0.097 0.903 7 C -0.087 4.087 8 C -0.126 4.126 9 C -0.095 4.095 10 C -0.157 4.157 11 C -0.097 4.097 12 C -0.159 4.159 13 C 0.133 3.867 14 N -0.487 5.487 15 C 0.068 3.932 16 C -0.062 4.062 17 C -0.152 4.152 18 C -0.127 4.127 19 C 0.038 3.962 20 C -0.510 4.510 21 H 0.058 0.942 22 C 0.057 3.943 23 N -0.896 5.896 24 Si 0.888 3.112 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.278 1.278 28 C 0.026 3.974 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.411 0.589 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.017 0.983 48 H 0.014 0.986 49 H 0.260 0.740 50 H 0.060 0.940 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 13.007 -13.213 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.436 6.436 4 N -0.363 5.363 5 C 0.036 3.964 6 H 0.115 0.885 7 C -0.125 4.125 8 C -0.129 4.129 9 C -0.113 4.113 10 C -0.176 4.176 11 C -0.115 4.115 12 C -0.180 4.180 13 C 0.034 3.966 14 N -0.199 5.199 15 C -0.057 4.057 16 C -0.062 4.062 17 C -0.209 4.209 18 C -0.184 4.184 19 C 0.000 4.000 20 C -0.549 4.549 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.535 5.535 24 Si 0.716 3.284 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 C -0.100 4.100 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.247 0.753 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.035 0.965 48 H 0.032 0.968 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.575 13.572 -12.960 18.942 hybrid contribution 0.408 -0.802 0.691 1.135 sum -2.166 12.770 -12.269 17.841 Atomic orbital electron populations 1.21873 0.91987 1.04866 1.04577 1.20791 0.90585 0.83538 0.75339 1.90693 1.70853 1.31553 1.50545 1.46044 1.06750 1.09179 1.74298 1.21108 0.80820 0.98327 0.96132 0.88470 1.20915 1.01470 0.94868 0.95291 1.19432 1.05275 0.94263 0.93925 1.20872 0.99478 0.98047 0.92944 1.20902 1.04219 0.93066 0.99405 1.20922 0.98655 0.97851 0.94096 1.21247 1.04907 0.97568 0.94229 1.18725 0.95973 0.93158 0.88793 1.58160 1.55178 1.05167 1.01435 1.22636 0.98245 0.87645 0.97162 1.20716 0.95121 1.00191 0.90212 1.22425 0.97003 0.98353 1.03100 1.21856 0.96802 0.98890 1.00829 1.19110 0.97062 0.87807 0.95972 1.21146 1.49948 0.92063 0.91706 0.92347 1.24994 0.95531 0.95834 0.98024 1.69948 1.50825 0.97334 1.35418 0.86732 0.78597 0.76918 0.86186 1.20302 1.21409 1.20343 1.23327 0.97196 0.88008 1.01447 0.89107 0.90021 0.89068 0.75267 0.90351 0.90178 0.86656 0.86657 0.86309 0.85291 0.89914 0.93957 0.93482 0.90584 0.94226 0.93377 0.92716 0.93232 0.96504 0.96775 0.93019 0.92215 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.30 36.01 0.37 -1.07 16 2 C 0.51 6.14 7.89 -10.99 -0.09 6.06 16 3 O -0.56 -8.76 16.78 5.56 0.09 -8.66 16 4 N -0.71 -8.09 4.86 -53.59 -0.26 -8.35 16 5 C 0.14 1.66 2.86 -67.71 -0.19 1.46 16 6 H 0.10 1.18 7.62 -51.93 -0.40 0.79 16 7 C -0.09 -0.99 5.43 -27.81 -0.15 -1.14 16 8 C -0.13 -1.54 5.65 -104.38 -0.59 -2.13 16 9 C -0.09 -1.07 9.63 -39.51 -0.38 -1.45 16 10 C -0.16 -1.71 10.05 -39.62 -0.40 -2.11 16 11 C -0.10 -1.11 10.03 -39.71 -0.40 -1.51 16 12 C -0.16 -2.06 9.02 -39.23 -0.35 -2.41 16 13 C 0.13 1.74 5.72 -83.85 -0.48 1.26 16 14 N -0.49 -6.40 2.73 -171.29 -0.47 -6.86 16 15 C 0.07 1.04 3.77 -3.83 -0.01 1.03 16 16 C -0.06 -1.10 0.53 -154.51 -0.08 -1.18 16 17 C -0.15 -2.55 7.49 37.16 0.28 -2.27 16 18 C -0.13 -2.13 7.42 37.16 0.28 -1.86 16 19 C 0.04 0.89 3.94 -27.88 -0.11 0.78 16 20 C -0.51 -13.19 7.40 -34.44 -0.25 -13.45 16 21 H 0.06 1.47 5.96 -52.49 -0.31 1.15 16 22 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 24 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.03 0.32 2.80 -3.89 -0.01 0.31 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 4.56 7.77 -40.82 -0.32 4.24 16 33 H 0.08 0.94 8.12 -51.92 -0.42 0.52 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 37 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.13 1.68 5.95 -52.49 -0.31 1.37 16 39 H 0.08 1.32 6.07 -51.92 -0.32 1.01 16 40 H 0.04 0.67 7.63 -51.93 -0.40 0.27 16 41 H 0.05 0.67 4.92 -51.93 -0.26 0.42 16 42 H 0.08 1.47 6.24 -51.93 -0.32 1.14 16 43 H 0.04 0.63 7.60 -51.93 -0.39 0.24 16 44 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 45 H 0.05 1.00 6.91 -51.93 -0.36 0.64 16 46 H 0.05 0.71 4.84 -51.93 -0.25 0.45 16 47 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 50 H 0.06 0.74 7.80 -51.93 -0.41 0.34 16 51 H 0.13 1.63 2.96 -51.93 -0.15 1.48 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -29.92 383.73 -9.79 -39.70 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.98 Total: 5.84 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.67 Total: -18.23 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.01 Total: -40.31 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.92 -9.79 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378563321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.391 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds