Wall clock time and date at job start Sat Apr 11 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47426 * 2 1 4 4 C 1.46503 * 119.99821 * 278.88038 * 3 2 1 5 5 C 1.50697 * 109.47143 * 269.99995 * 4 3 2 6 6 H 1.08001 * 120.00113 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00004 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00238 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 120.00012 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46774 * 90.00281 * 9 7 5 11 11 H 1.48496 * 109.47079 * 210.00203 * 9 7 5 12 12 H 1.48495 * 109.47214 * 330.00233 * 9 7 5 13 13 C 1.34780 * 120.00417 * 98.87915 * 3 2 1 14 14 O 1.21594 * 119.99980 * 186.86832 * 13 3 2 15 15 C 1.47519 * 119.99747 * 6.86409 * 13 3 2 16 16 C 1.39797 * 120.06464 * 134.74820 * 15 13 3 17 17 C 1.37605 * 119.92826 * 180.02562 * 16 15 13 18 18 C 1.39222 * 120.07086 * 0.02562 * 17 16 15 19 19 N 1.39043 * 119.93159 * 179.97438 * 18 17 16 20 20 C 1.47636 * 110.99752 * 218.18464 * 19 18 17 21 21 C 1.50822 * 108.08962 * 150.31717 * 20 19 18 22 22 C 1.53868 * 111.59356 * 94.99939 * 21 20 19 23 23 C 1.54175 * 112.00416 * 319.12136 * 22 21 20 24 24 C 1.50752 * 112.60838 * 318.44914 * 23 22 21 25 25 C 1.39772 * 111.00354 * 89.28644 * 19 18 17 26 26 C 1.39224 * 120.13764 * 0.25282 * 18 17 16 27 27 C 1.37611 * 120.06499 * 359.44361 * 26 18 17 28 28 H 1.08995 * 109.47514 * 300.00715 * 1 2 3 29 29 H 1.09004 * 109.46917 * 60.00611 * 1 2 3 30 30 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47514 * 239.99285 * 2 1 3 32 32 H 1.09004 * 109.46917 * 119.99389 * 2 1 3 33 33 H 1.09000 * 109.46910 * 29.99659 * 4 3 2 34 34 H 1.09001 * 109.47283 * 149.99963 * 4 3 2 35 35 H 0.96997 * 120.00193 * 180.02562 * 8 7 5 36 36 H 1.07998 * 120.03660 * 0.04916 * 16 15 13 37 37 H 1.08004 * 119.96887 * 180.02562 * 17 16 15 38 38 H 1.08995 * 109.74821 * 269.98140 * 20 19 18 39 39 H 1.09004 * 109.74810 * 30.66051 * 20 19 18 40 40 H 1.08996 * 109.05360 * 215.62940 * 21 20 19 41 41 H 1.08998 * 109.04566 * 334.53346 * 21 20 19 42 42 H 1.08992 * 108.99115 * 198.44946 * 22 21 20 43 43 H 1.09004 * 108.87254 * 79.70515 * 22 21 20 44 44 H 1.09004 * 108.85021 * 197.64999 * 23 22 21 45 45 H 1.08995 * 108.85592 * 79.25801 * 23 22 21 46 46 H 1.09005 * 109.54681 * 333.15787 * 24 23 22 47 47 H 1.08996 * 109.54649 * 212.88686 * 24 23 22 48 48 H 1.08997 * 109.01934 * 309.72234 * 25 19 18 49 49 H 1.09000 * 109.02026 * 68.61888 * 25 19 18 50 50 H 1.07991 * 119.96766 * 179.72628 * 26 18 17 51 51 H 1.07999 * 120.03526 * 180.27006 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0779 2.1370 -1.2536 5 6 3.4217 1.9282 -1.9027 6 1 4.1580 1.2961 -1.4287 7 6 3.7113 2.5442 -3.1018 8 7 2.8149 3.3144 -3.6788 9 14 5.3775 2.2859 -3.9061 10 1 5.3135 1.1098 -4.8104 11 1 5.7413 3.4936 -4.6898 12 1 6.4019 2.0490 -2.8576 13 6 2.4129 1.9565 1.1532 14 8 2.6993 3.1380 1.1763 15 6 2.4971 1.1528 2.3874 16 6 3.6138 1.2645 3.2210 17 6 3.6897 0.5131 4.3713 18 6 2.6562 -0.3580 4.7049 19 7 2.7361 -1.1163 5.8677 20 6 2.1886 -2.4707 5.6546 21 6 2.9122 -3.4189 6.5778 22 6 2.1377 -3.6330 7.8900 23 6 1.5277 -2.3206 8.4215 24 6 2.4678 -1.1495 8.2898 25 6 2.1884 -0.4275 6.9536 26 6 1.5455 -0.4758 3.8738 27 6 1.4608 0.2776 2.7254 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.2923 1.7899 -1.9248 34 1 1.9357 3.1975 -1.0455 35 1 3.0185 3.7475 -4.5225 36 1 4.4158 1.9400 2.9627 37 1 4.5519 0.5991 5.0160 38 1 1.1227 -2.4770 5.8820 39 1 2.3461 -2.7730 4.6193 40 1 3.0367 -4.3784 6.0760 41 1 3.8955 -3.0093 6.8089 42 1 2.8165 -4.0379 8.6404 43 1 1.3362 -4.3504 7.7133 44 1 1.2730 -2.4513 9.4733 45 1 0.6161 -2.1049 7.8644 46 1 3.4980 -1.5055 8.3035 47 1 2.3083 -0.4589 9.1178 48 1 2.6192 0.5729 6.9935 49 1 1.1105 -0.3447 6.8146 50 1 0.7474 -1.1556 4.1331 51 1 0.5970 0.1891 2.0833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463970.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:02 Heat of formation + Delta-G solvation = 3.757088 kcal Electronic energy + Delta-G solvation = -28683.854902 eV Core-core repulsion = 24969.279144 eV Total energy + Delta-G solvation = -3714.575757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.80845 -39.45117 -37.53830 -35.41892 -34.76307 -32.81709 -32.53561 -31.05879 -30.09036 -29.94077 -27.30654 -26.16386 -25.55313 -23.54175 -23.01089 -22.50664 -22.07435 -20.80095 -19.67522 -18.86388 -17.61144 -16.78322 -16.37695 -16.09667 -15.61661 -15.36131 -15.12879 -14.86658 -14.74454 -14.42035 -14.27982 -13.93590 -13.65185 -13.41141 -13.20756 -12.86861 -12.60846 -12.48057 -12.46127 -12.24462 -12.04132 -11.98142 -11.60113 -11.51177 -11.22458 -11.17018 -11.04539 -10.95288 -10.82240 -10.75065 -10.70054 -10.62785 -10.54640 -10.12965 -9.63469 -9.14539 -8.96606 -8.88251 -8.43169 -8.09701 -7.65462 -6.03953 -4.08826 1.10742 1.45407 3.30445 3.31941 3.37464 3.42339 3.55807 3.80314 4.08940 4.41052 4.45205 4.46064 4.58698 4.79406 4.83926 4.87437 4.95379 5.00199 5.06798 5.18989 5.26617 5.30461 5.35230 5.36320 5.41274 5.44016 5.48559 5.58063 5.60404 5.62287 5.74422 5.78047 5.81445 5.83796 5.85484 5.97191 6.00530 6.10152 6.11559 6.24604 6.26655 6.38143 6.51205 6.59436 6.78584 7.01832 7.09352 7.32195 7.46135 7.54839 7.92794 8.23782 8.40905 8.89283 9.07074 9.56278 11.04086 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.002504 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.584203 B =11179.129365 C =11351.437657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 N -0.589 5.589 4 C 0.245 3.755 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.547 3.453 14 O -0.538 6.538 15 C -0.122 4.122 16 C -0.059 4.059 17 C -0.116 4.116 18 C 0.108 3.892 19 N -0.512 5.512 20 C 0.065 3.935 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.118 4.118 25 C 0.077 3.923 26 C -0.165 4.165 27 C -0.091 4.091 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.026 0.974 50 H 0.121 0.879 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 -14.895 22.644 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 N -0.320 5.320 4 C 0.126 3.874 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.334 3.666 14 O -0.417 6.417 15 C -0.125 4.125 16 C -0.078 4.078 17 C -0.135 4.135 18 C 0.014 3.986 19 N -0.231 5.231 20 C -0.060 4.060 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.050 4.050 26 C -0.185 4.185 27 C -0.109 4.109 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.044 0.956 50 H 0.139 0.861 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.790 -14.223 22.616 26.984 hybrid contribution 0.072 -0.136 -0.770 0.785 sum -3.718 -14.358 21.847 26.406 Atomic orbital electron populations 1.22332 0.96830 1.01589 1.02426 1.21691 0.93551 0.84487 1.03187 1.48166 1.61586 1.13329 1.08881 1.19304 0.97099 0.92679 0.78318 1.21440 1.00000 1.29561 1.05614 0.92424 1.24937 0.97261 0.94883 0.97011 1.69934 1.34337 1.31000 1.18051 0.86495 0.84061 0.77594 0.79281 1.20636 1.21074 1.19853 1.18162 0.78251 0.87043 0.83123 1.90761 1.49826 1.15538 1.85536 1.20253 0.96467 0.98820 0.96968 1.21139 0.97046 0.97073 0.92576 1.20853 0.98126 0.97346 0.97191 1.18804 0.93422 0.94858 0.91563 1.56113 1.60804 1.03114 1.03030 1.21942 0.97141 0.86857 1.00109 1.21427 1.00449 0.98765 0.95100 1.21934 0.99543 0.96981 0.97087 1.21436 0.98873 0.94895 1.00786 1.21498 1.00954 0.97018 0.96119 1.21031 0.96911 0.97352 0.89719 1.21404 0.97725 1.02347 0.97024 1.21729 0.98891 0.93901 0.96420 0.92625 0.91531 0.91926 0.90261 0.90465 0.94850 0.93633 0.92708 0.84967 0.85262 0.93457 0.90331 0.91708 0.90450 0.92175 0.92419 0.92286 0.92438 0.90519 0.91308 0.90715 0.95609 0.86123 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.43 37.16 0.35 -2.03 16 2 C 0.09 1.58 5.59 -4.05 -0.02 1.56 16 3 N -0.59 -12.82 2.47 -176.30 -0.43 -13.26 16 4 C 0.24 6.48 5.22 -5.19 -0.03 6.45 16 5 C -0.53 -15.07 9.39 -34.44 -0.32 -15.40 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.55 12.06 7.26 -12.48 -0.09 11.97 16 14 O -0.54 -14.16 16.54 5.28 0.09 -14.07 16 15 C -0.12 -2.09 5.14 -104.95 -0.54 -2.63 16 16 C -0.06 -0.92 9.67 -39.23 -0.38 -1.30 16 17 C -0.12 -1.49 9.89 -39.45 -0.39 -1.88 16 18 C 0.11 1.27 4.52 -83.86 -0.38 0.89 16 19 N -0.51 -4.98 3.91 -176.20 -0.69 -5.67 16 20 C 0.07 0.55 4.12 -4.51 -0.02 0.53 16 21 C -0.12 -0.85 5.42 -27.37 -0.15 -1.00 16 22 C -0.12 -0.73 5.91 -25.67 -0.15 -0.88 16 23 C -0.12 -0.79 5.31 -27.24 -0.14 -0.93 16 24 C -0.12 -0.83 5.65 -27.11 -0.15 -0.98 16 25 C 0.08 0.68 4.88 -6.75 -0.03 0.65 16 26 C -0.16 -1.94 8.81 -39.44 -0.35 -2.29 16 27 C -0.09 -1.26 7.35 -39.23 -0.29 -1.55 16 28 H 0.06 0.73 6.11 -51.93 -0.32 0.41 16 29 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.37 8.13 -51.93 -0.42 0.94 16 32 H 0.08 1.14 4.88 -51.93 -0.25 0.89 16 33 H 0.03 0.89 7.82 -51.93 -0.41 0.48 16 34 H 0.05 1.36 7.34 -51.93 -0.38 0.98 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.05 0.37 6.44 -51.93 -0.33 0.04 16 39 H 0.08 0.70 7.39 -51.93 -0.38 0.31 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.63 7.27 -51.93 -0.38 0.25 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 46 H 0.08 0.58 7.11 -51.93 -0.37 0.21 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 49 H 0.03 0.24 7.54 -51.93 -0.39 -0.15 16 50 H 0.12 1.17 7.07 -52.49 -0.37 0.80 16 51 H 0.14 1.83 3.68 -52.49 -0.19 1.63 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -32.64 390.30 -10.91 -43.56 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.29 Total: -0.27 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -3.18 Total: -7.17 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.39 Total: -44.89 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.09 Total: -14.07 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.64 -10.91 -43.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463970.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.313 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds