Wall clock time and date at job start Sat Apr 11 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47049 * 132.81185 * 3 2 1 5 5 H 1.09004 * 109.46948 * 54.86717 * 4 3 2 6 6 C 1.52998 * 109.47325 * 294.86876 * 4 3 2 7 7 C 1.53002 * 109.47471 * 174.32186 * 6 4 3 8 8 C 1.50703 * 109.47436 * 174.86244 * 4 3 2 9 9 N 1.30296 * 126.34313 * 59.69399 * 8 4 3 10 10 N 1.28531 * 110.05300 * 179.82449 * 9 8 4 11 11 C 1.31219 * 109.85845 * 0.44749 * 10 9 8 12 12 N 1.38575 * 126.47413 * 179.73531 * 11 10 9 13 13 C 1.46845 * 111.00193 * 60.59162 * 12 11 10 14 14 C 1.53040 * 109.52651 * 174.16346 * 13 12 11 15 15 C 1.53122 * 109.27712 * 59.17841 * 14 13 12 16 16 C 1.50693 * 109.52296 * 182.44255 * 15 14 13 17 17 H 1.08000 * 120.00333 * 119.68301 * 16 15 14 18 18 C 1.37876 * 120.00167 * 299.68593 * 16 15 14 19 19 N 1.31520 * 119.99685 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00186 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47239 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47294 * 119.99987 * 20 18 16 23 23 H 1.48503 * 109.47278 * 239.99825 * 20 18 16 24 24 C 1.53123 * 109.16184 * 302.35176 * 15 14 13 25 25 C 1.46848 * 110.99551 * 296.38594 * 12 11 10 26 26 N 1.36457 * 107.05176 * 359.72942 * 11 10 9 27 27 C 1.46505 * 127.13347 * 179.97438 * 26 11 10 28 28 C 1.53004 * 109.47141 * 272.24035 * 27 26 11 29 29 H 4.44643 * 5.63329 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47300 * 252.81319 * 3 2 1 31 31 H 1.08997 * 109.47412 * 12.81525 * 3 2 1 32 32 H 1.09002 * 109.47144 * 294.32040 * 6 4 3 33 33 H 1.08993 * 109.47411 * 54.32219 * 6 4 3 34 34 H 1.09002 * 109.46856 * 306.14016 * 7 6 4 35 35 H 1.09004 * 109.47115 * 66.13189 * 7 6 4 36 36 H 1.08998 * 109.47526 * 186.13659 * 7 6 4 37 37 H 1.08998 * 109.46452 * 294.18378 * 13 12 11 38 38 H 1.08998 * 109.46239 * 54.14667 * 13 12 11 39 39 H 1.09002 * 109.50117 * 299.24389 * 14 13 12 40 40 H 1.08997 * 109.50327 * 179.11920 * 14 13 12 41 41 H 1.09002 * 109.52220 * 62.25175 * 15 14 13 42 42 H 0.97008 * 119.99211 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.49608 * 297.71148 * 24 15 14 44 44 H 1.08995 * 109.50162 * 177.59883 * 24 15 14 45 45 H 1.08998 * 109.46521 * 305.85161 * 25 12 11 46 46 H 1.09003 * 109.46505 * 65.82297 * 25 12 11 47 47 H 1.08996 * 109.46687 * 32.24041 * 27 26 11 48 48 H 1.08997 * 109.46884 * 152.24265 * 27 26 11 49 49 H 1.08998 * 109.47052 * 300.00519 * 28 27 26 50 50 H 1.09006 * 109.46785 * 60.00448 * 28 27 26 51 51 H 1.09001 * 109.46868 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9812 -1.0582 5 1 2.7186 1.9643 -0.8829 6 6 2.7538 0.4852 -2.4487 7 6 3.1381 1.5334 -3.4949 8 6 4.6571 1.0766 -0.9732 9 7 5.5028 0.0969 -1.1240 10 7 6.7060 0.5290 -0.9913 11 6 6.6919 1.8163 -0.7372 12 7 7.7962 2.6269 -0.5283 13 6 8.6727 2.6362 -1.7064 14 6 9.8002 3.6496 -1.4971 15 6 10.5980 3.2673 -0.2473 16 6 11.6725 4.2950 -0.0018 17 1 11.6816 4.8572 0.9202 18 6 12.6441 4.5176 -0.9544 19 7 12.6333 3.8326 -2.0771 20 14 13.9764 5.7910 -0.6499 21 1 13.7665 6.4189 0.6793 22 1 15.3071 5.1326 -0.6822 23 1 13.9146 6.8342 -1.7049 24 6 9.6529 3.2175 0.9565 25 6 8.5297 2.2166 0.6760 26 7 5.3843 2.2059 -0.7178 27 6 4.8669 3.5546 -0.4732 28 6 4.6770 3.7631 1.0306 29 1 -1.0501 -0.0001 0.0004 30 1 3.0092 0.3045 0.9818 31 1 3.0098 -1.0012 -0.2279 32 1 3.2709 -0.4499 -2.6643 33 1 1.6769 0.3200 -2.4785 34 1 2.7087 2.4965 -3.2189 35 1 4.2237 1.6196 -3.5412 36 1 2.7557 1.2310 -4.4698 37 1 9.0988 1.6433 -1.8499 38 1 8.0940 2.9136 -2.5874 39 1 9.3754 4.6450 -1.3673 40 1 10.4595 3.6450 -2.3651 41 1 11.0551 2.2885 -0.3922 42 1 13.3167 3.9896 -2.7475 43 1 9.2258 4.2061 1.1248 44 1 10.2069 2.9044 1.8413 45 1 7.8471 2.1894 1.5253 46 1 8.9566 1.2257 0.5213 47 1 5.5747 4.2900 -0.8555 48 1 3.9095 3.6739 -0.9803 49 1 3.9693 3.0275 1.4129 50 1 5.6345 3.6438 1.5377 51 1 4.2925 4.7666 1.2126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339301708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:48 Heat of formation + Delta-G solvation = 115.824390 kcal Electronic energy + Delta-G solvation = -29161.476773 eV Core-core repulsion = 25484.053369 eV Total energy + Delta-G solvation = -3677.423403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.212 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.90179 -38.41177 -37.20159 -35.61938 -34.00411 -33.24572 -31.52115 -30.66597 -30.25424 -29.95453 -28.47575 -25.79348 -24.85699 -24.11342 -23.00857 -22.43771 -22.16360 -20.54492 -20.00289 -18.55409 -18.33388 -17.23531 -16.48672 -16.19088 -16.06639 -15.43176 -14.66689 -14.59710 -14.46427 -14.37058 -14.03150 -13.95107 -13.49461 -13.21156 -13.11592 -12.81811 -12.56716 -12.53312 -12.42830 -12.29044 -11.79463 -11.64213 -11.56857 -11.50054 -11.25455 -11.08072 -11.02898 -10.90918 -10.57782 -10.52522 -10.36922 -10.32604 -10.29791 -10.16820 -10.00367 -9.55648 -9.09863 -8.82980 -8.71740 -8.33400 -8.28706 -6.00178 -4.05708 1.81729 2.29314 2.56358 2.57042 3.00329 3.28843 3.37403 3.40730 3.90229 4.06554 4.26636 4.43020 4.43331 4.49881 4.70440 4.82092 4.84031 5.04715 5.12465 5.21634 5.29385 5.30142 5.34266 5.42971 5.46005 5.50395 5.61307 5.64224 5.69821 5.74804 5.77715 5.88833 5.90125 5.97350 5.98185 6.11415 6.13061 6.21105 6.21954 6.43419 6.51462 6.70954 6.76802 6.92392 7.05351 7.32780 7.34674 7.38536 7.66151 7.74816 7.98061 8.08589 8.43070 8.91463 8.98078 9.59104 11.06218 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.025691 B = 0.002610 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.599733 B =10723.721482 C =10988.349645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C -0.003 4.003 4 C 0.014 3.986 5 H 0.087 0.913 6 C -0.114 4.114 7 C -0.151 4.151 8 C 0.171 3.829 9 N -0.283 5.283 10 N -0.314 5.314 11 C 0.364 3.636 12 N -0.465 5.465 13 C 0.070 3.930 14 C -0.103 4.103 15 C 0.046 3.954 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.105 4.105 25 C 0.074 3.926 26 N -0.463 5.463 27 C 0.107 3.893 28 C -0.166 4.166 29 H 0.217 0.783 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.099 0.901 41 H 0.026 0.974 42 H 0.259 0.741 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.579 -2.430 2.195 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C -0.041 4.041 4 C -0.007 4.007 5 H 0.105 0.895 6 C -0.152 4.152 7 C -0.209 4.209 8 C -0.096 4.096 9 N -0.124 5.124 10 N -0.157 5.157 11 C 0.008 3.992 12 N -0.192 5.192 13 C -0.056 4.056 14 C -0.141 4.141 15 C 0.028 3.972 16 C -0.548 4.548 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.143 4.143 25 C -0.053 4.053 26 N -0.156 5.156 27 C -0.016 4.016 28 C -0.224 4.224 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.123 0.877 48 H 0.106 0.894 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.061 -3.321 1.860 23.373 hybrid contribution 0.370 1.373 0.202 1.436 sum -22.691 -1.948 2.062 22.868 Atomic orbital electron populations 1.24871 0.95868 1.00994 1.01018 1.22914 0.94182 1.00438 1.00286 1.18693 0.84684 1.01382 0.99309 1.19511 0.84272 1.00256 0.96661 0.89472 1.21602 1.01548 1.00038 0.92038 1.21767 1.01699 0.98551 0.98849 1.24369 0.96311 0.83134 1.05812 1.73942 0.95467 1.24770 1.18173 1.74707 1.13903 1.07259 1.19874 1.22723 0.85247 0.89634 1.01575 1.58955 1.06162 1.47183 1.06943 1.22377 0.93732 1.01084 0.88375 1.21735 0.93579 0.95227 1.03554 1.18718 0.91885 0.97247 0.89394 1.21195 1.09876 1.20910 1.02835 0.92615 1.24976 0.97697 0.96117 0.95250 1.69880 1.34568 1.40954 1.07551 0.86575 0.81928 0.81534 0.78171 1.19847 1.21107 1.21116 1.21722 0.94813 0.97272 1.00462 1.22187 0.95403 0.98907 0.88786 1.46442 1.06424 1.09989 1.52756 1.21826 1.00686 0.80872 0.98191 1.22117 1.03267 1.02600 0.94399 0.76662 0.89420 0.88052 0.90290 0.90805 0.92969 0.92850 0.92270 0.93701 0.92723 0.93672 0.88250 0.95612 0.93057 0.92348 0.92377 0.92543 0.93633 0.87747 0.89358 0.92383 0.91138 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.58 19.25 29.55 0.57 -1.01 16 2 C -0.18 -1.57 12.23 -37.12 -0.45 -2.02 16 3 C 0.00 -0.03 5.17 -29.52 -0.15 -0.18 16 4 C 0.01 0.13 2.19 -91.77 -0.20 -0.07 16 5 H 0.09 0.71 6.89 -51.93 -0.36 0.35 16 6 C -0.11 -1.04 5.28 -26.73 -0.14 -1.18 16 7 C -0.15 -1.40 9.63 37.16 0.36 -1.04 16 8 C 0.17 2.26 5.70 -154.02 -0.88 1.38 16 9 N -0.28 -4.73 12.18 32.99 0.40 -4.33 16 10 N -0.31 -5.95 12.19 30.31 0.37 -5.58 16 11 C 0.36 6.24 6.41 -318.88 -2.05 4.19 16 12 N -0.47 -8.35 4.67 -174.55 -0.82 -9.17 16 13 C 0.07 1.40 5.37 -3.83 -0.02 1.38 16 14 C -0.10 -2.33 5.12 -26.65 -0.14 -2.46 16 15 C 0.05 1.11 2.16 -91.65 -0.20 0.91 16 16 C -0.51 -13.55 8.56 -34.44 -0.29 -13.85 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.64 5.31 -17.82 -0.09 1.54 16 19 N -0.89 -24.92 11.37 55.43 0.63 -24.29 16 20 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.10 -2.10 5.32 -26.65 -0.14 -2.24 16 25 C 0.07 1.34 5.39 -3.83 -0.02 1.32 16 26 N -0.46 -6.28 2.81 -114.08 -0.32 -6.60 16 27 C 0.11 1.07 6.65 -4.04 -0.03 1.05 16 28 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16 29 H 0.22 0.90 7.80 -54.08 -0.42 0.48 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.59 7.22 -51.93 -0.37 0.21 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.62 7.60 -51.93 -0.39 0.23 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.05 1.04 8.10 -51.93 -0.42 0.61 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 2.54 6.17 -51.93 -0.32 2.21 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.09 0.66 7.13 -51.93 -0.37 0.29 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 411.27 15.07 6.20 6.20 Total: -1.00 -30.26 411.27 -11.02 -41.28 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.96 Total: -0.04 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.50 Total: -13.36 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.27 Total: -49.96 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.26 -11.02 -41.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339301708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.102 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds