Wall clock time and date at job start Sat Apr 11 2020 02:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47049 * 132.81185 * 3 2 1 5 5 H 1.09004 * 109.46948 * 54.86717 * 4 3 2 6 6 C 1.52998 * 109.47325 * 294.86876 * 4 3 2 7 7 C 1.53002 * 109.47471 * 174.32186 * 6 4 3 8 8 C 1.50703 * 109.47436 * 174.86244 * 4 3 2 9 9 N 1.30296 * 126.34313 * 59.69399 * 8 4 3 10 10 N 1.28531 * 110.05300 * 179.82449 * 9 8 4 11 11 C 1.31219 * 109.85845 * 0.44749 * 10 9 8 12 12 N 1.38575 * 126.47413 * 179.73531 * 11 10 9 13 13 C 1.46845 * 111.00193 * 60.59162 * 12 11 10 14 14 C 1.53040 * 109.52651 * 174.16346 * 13 12 11 15 15 C 1.53122 * 109.27712 * 59.17841 * 14 13 12 16 16 C 1.50693 * 109.52296 * 182.44255 * 15 14 13 17 17 H 1.08000 * 120.00333 * 119.68301 * 16 15 14 18 18 C 1.37876 * 120.00167 * 299.68593 * 16 15 14 19 19 N 1.31520 * 119.99685 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00186 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47239 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47294 * 119.99987 * 20 18 16 23 23 H 1.48503 * 109.47278 * 239.99825 * 20 18 16 24 24 C 1.53123 * 109.16184 * 302.35176 * 15 14 13 25 25 C 1.46848 * 110.99551 * 296.38594 * 12 11 10 26 26 N 1.36457 * 107.05176 * 359.72942 * 11 10 9 27 27 C 1.46505 * 127.13347 * 179.97438 * 26 11 10 28 28 C 1.53004 * 109.47141 * 272.24035 * 27 26 11 29 29 H 4.44643 * 5.63329 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47300 * 252.81319 * 3 2 1 31 31 H 1.08997 * 109.47412 * 12.81525 * 3 2 1 32 32 H 1.09002 * 109.47144 * 294.32040 * 6 4 3 33 33 H 1.08993 * 109.47411 * 54.32219 * 6 4 3 34 34 H 1.09002 * 109.46856 * 306.14016 * 7 6 4 35 35 H 1.09004 * 109.47115 * 66.13189 * 7 6 4 36 36 H 1.08998 * 109.47526 * 186.13659 * 7 6 4 37 37 H 1.08998 * 109.46452 * 294.18378 * 13 12 11 38 38 H 1.08998 * 109.46239 * 54.14667 * 13 12 11 39 39 H 1.09002 * 109.50117 * 299.24389 * 14 13 12 40 40 H 1.08997 * 109.50327 * 179.11920 * 14 13 12 41 41 H 1.09002 * 109.52220 * 62.25175 * 15 14 13 42 42 H 0.97008 * 119.99211 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.49608 * 297.71148 * 24 15 14 44 44 H 1.08995 * 109.50162 * 177.59883 * 24 15 14 45 45 H 1.08998 * 109.46521 * 305.85161 * 25 12 11 46 46 H 1.09003 * 109.46505 * 65.82297 * 25 12 11 47 47 H 1.08996 * 109.46687 * 32.24041 * 27 26 11 48 48 H 1.08997 * 109.46884 * 152.24265 * 27 26 11 49 49 H 1.08998 * 109.47052 * 300.00519 * 28 27 26 50 50 H 1.09006 * 109.46785 * 60.00448 * 28 27 26 51 51 H 1.09001 * 109.46868 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9812 -1.0582 5 1 2.7186 1.9643 -0.8829 6 6 2.7538 0.4852 -2.4487 7 6 3.1381 1.5334 -3.4949 8 6 4.6571 1.0766 -0.9732 9 7 5.5028 0.0969 -1.1240 10 7 6.7060 0.5290 -0.9913 11 6 6.6919 1.8163 -0.7372 12 7 7.7962 2.6269 -0.5283 13 6 8.6727 2.6362 -1.7064 14 6 9.8002 3.6496 -1.4971 15 6 10.5980 3.2673 -0.2473 16 6 11.6725 4.2950 -0.0018 17 1 11.6816 4.8572 0.9202 18 6 12.6441 4.5176 -0.9544 19 7 12.6333 3.8326 -2.0771 20 14 13.9764 5.7910 -0.6499 21 1 13.7665 6.4189 0.6793 22 1 15.3071 5.1326 -0.6822 23 1 13.9146 6.8342 -1.7049 24 6 9.6529 3.2175 0.9565 25 6 8.5297 2.2166 0.6760 26 7 5.3843 2.2059 -0.7178 27 6 4.8669 3.5546 -0.4732 28 6 4.6770 3.7631 1.0306 29 1 -1.0501 -0.0001 0.0004 30 1 3.0092 0.3045 0.9818 31 1 3.0098 -1.0012 -0.2279 32 1 3.2709 -0.4499 -2.6643 33 1 1.6769 0.3200 -2.4785 34 1 2.7087 2.4965 -3.2189 35 1 4.2237 1.6196 -3.5412 36 1 2.7557 1.2310 -4.4698 37 1 9.0988 1.6433 -1.8499 38 1 8.0940 2.9136 -2.5874 39 1 9.3754 4.6450 -1.3673 40 1 10.4595 3.6450 -2.3651 41 1 11.0551 2.2885 -0.3922 42 1 13.3167 3.9896 -2.7475 43 1 9.2258 4.2061 1.1248 44 1 10.2069 2.9044 1.8413 45 1 7.8471 2.1894 1.5253 46 1 8.9566 1.2257 0.5213 47 1 5.5747 4.2900 -0.8555 48 1 3.9095 3.6739 -0.9803 49 1 3.9693 3.0275 1.4129 50 1 5.6345 3.6438 1.5377 51 1 4.2925 4.7666 1.2126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339301708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:47 Heat of formation + Delta-G solvation = 102.385113 kcal Electronic energy + Delta-G solvation = -29162.059544 eV Core-core repulsion = 25484.053369 eV Total energy + Delta-G solvation = -3678.006174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.212 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.10186 -39.97055 -38.06324 -36.64107 -35.75655 -33.95343 -33.29512 -31.68803 -31.54340 -31.14963 -29.68270 -27.59360 -25.72978 -25.04233 -24.37192 -23.91717 -23.58533 -21.85261 -21.06128 -20.18956 -18.96617 -18.54153 -18.23018 -17.41948 -17.26667 -16.52851 -16.43038 -15.77266 -15.37347 -15.22526 -15.05141 -15.01880 -14.68673 -14.64514 -14.44369 -14.22623 -13.99614 -13.89048 -13.34208 -13.22911 -13.07833 -12.96400 -12.79161 -12.54828 -12.47101 -12.36676 -12.29621 -12.19055 -12.13608 -11.99182 -11.82753 -11.60358 -11.39620 -11.19112 -11.07916 -10.96689 -10.91658 -10.74431 -10.40649 -10.01258 -9.81736 -8.07014 -6.20097 0.65826 1.20814 1.42067 1.44590 1.55335 1.70665 1.97619 1.98570 2.45306 2.71016 3.10867 3.20835 3.50815 3.70397 3.73367 3.87036 3.96941 4.06531 4.07720 4.12747 4.17384 4.32650 4.39522 4.40567 4.43998 4.50343 4.56764 4.61341 4.62967 4.64422 4.70888 4.81200 4.86402 4.89908 4.97796 4.99270 5.06169 5.12188 5.17616 5.19845 5.21174 5.22751 5.23943 5.34659 5.48710 5.59490 5.68979 5.73809 5.99450 6.13645 6.30564 6.38946 6.75866 6.91478 7.48150 7.68465 8.98295 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.025691 B = 0.002610 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.599733 B =10723.721482 C =10988.349645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.213 4.213 3 C 0.003 3.997 4 C 0.018 3.982 5 H 0.113 0.887 6 C -0.109 4.109 7 C -0.149 4.149 8 C 0.197 3.803 9 N -0.318 5.318 10 N -0.351 5.351 11 C 0.346 3.654 12 N -0.453 5.453 13 C 0.086 3.914 14 C -0.089 4.089 15 C 0.042 3.958 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.011 3.989 19 N -0.919 5.919 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.281 1.281 24 C -0.093 4.093 25 C 0.083 3.917 26 N -0.455 5.455 27 C 0.098 3.902 28 C -0.160 4.160 29 H 0.246 0.754 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.022 0.978 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.068 0.932 41 H -0.013 1.013 42 H 0.260 0.740 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.026 0.974 47 H 0.097 0.903 48 H 0.122 0.878 49 H 0.064 0.936 50 H 0.046 0.954 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.900 -0.829 3.123 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.213 4.213 3 C -0.035 4.035 4 C -0.003 4.003 5 H 0.131 0.869 6 C -0.147 4.147 7 C -0.206 4.206 8 C -0.072 4.072 9 N -0.158 5.158 10 N -0.195 5.195 11 C -0.011 4.011 12 N -0.179 5.179 13 C -0.041 4.041 14 C -0.127 4.127 15 C 0.024 3.976 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.187 4.187 19 N -0.559 5.559 20 Si 0.780 3.220 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.207 1.207 24 C -0.131 4.131 25 C -0.044 4.044 26 N -0.147 5.147 27 C -0.023 4.023 28 C -0.218 4.218 29 H 0.262 0.738 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.006 0.994 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.044 0.956 47 H 0.116 0.884 48 H 0.140 0.860 49 H 0.083 0.917 50 H 0.066 0.934 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -26.403 -1.710 2.804 26.607 hybrid contribution 1.271 0.825 -0.099 1.519 sum -25.132 -0.885 2.705 25.293 Atomic orbital electron populations 1.25643 0.96609 0.99113 0.99183 1.22904 0.94311 1.02151 1.01976 1.18516 0.85497 1.00496 0.98942 1.19739 0.81458 1.01882 0.97229 0.86920 1.21567 1.02433 0.99137 0.91609 1.21756 0.99727 0.99608 0.99520 1.25079 0.97517 0.82140 1.02430 1.73873 0.95311 1.26285 1.20283 1.74602 1.15529 1.08538 1.20846 1.22520 0.86037 0.89369 1.03206 1.58861 1.05936 1.47346 1.05780 1.22045 0.93384 0.98778 0.89869 1.21445 0.93739 0.95894 1.01637 1.18687 0.92508 0.94652 0.91801 1.21545 1.10731 1.21290 1.02832 0.92488 1.25753 0.99896 0.98013 0.95065 1.70030 1.35263 1.42295 1.08300 0.85572 0.78981 0.79122 0.78357 1.18916 1.21125 1.20695 1.21547 0.94545 0.98231 0.98734 1.22059 0.95328 0.97177 0.89838 1.46631 1.05009 1.11396 1.51714 1.22217 1.01893 0.78624 0.99605 1.22093 1.02315 1.04412 0.92946 0.73762 0.89502 0.89319 0.92174 0.88845 0.91040 0.95855 0.91405 0.96103 0.91701 0.93602 0.91368 0.99443 0.93129 0.91548 0.91801 0.90112 0.95593 0.88437 0.85965 0.91669 0.93450 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 19.25 74.32 1.43 -0.71 16 2 C -0.21 -3.18 12.23 31.13 0.38 -2.79 16 3 C 0.00 0.05 5.17 28.79 0.15 0.20 16 4 C 0.02 0.30 2.19 -11.54 -0.03 0.27 16 5 H 0.11 1.36 6.89 -2.39 -0.02 1.34 16 6 C -0.11 -1.79 5.28 30.59 0.16 -1.62 16 7 C -0.15 -2.45 9.63 71.98 0.69 -1.75 16 8 C 0.20 5.00 5.70 137.64 0.78 5.79 16 9 N -0.32 -10.79 12.18 -49.54 -0.60 -11.39 16 10 N -0.35 -13.71 12.19 -58.00 -0.71 -14.42 16 11 C 0.35 11.91 6.41 260.11 1.67 13.58 16 12 N -0.45 -16.42 4.67 -706.15 -3.30 -19.72 16 13 C 0.09 3.57 5.37 86.33 0.46 4.04 16 14 C -0.09 -4.18 5.12 30.65 0.16 -4.02 16 15 C 0.04 2.10 2.16 -11.46 -0.02 2.07 16 16 C -0.53 -28.45 8.56 25.60 0.22 -28.23 16 17 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 18 C 0.01 0.61 5.31 84.65 0.45 1.06 16 19 N -0.92 -53.10 11.37 21.45 0.24 -52.86 16 20 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 C -0.09 -3.73 5.32 30.65 0.16 -3.57 16 25 C 0.08 3.05 5.39 86.33 0.47 3.52 16 26 N -0.46 -11.79 2.81 -514.84 -1.45 -13.24 16 27 C 0.10 1.69 6.65 86.38 0.57 2.27 16 28 C -0.16 -2.36 10.24 71.98 0.74 -1.62 16 29 H 0.25 0.94 7.80 -4.41 -0.03 0.91 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.21 7.22 -2.39 -0.02 1.19 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.02 0.52 7.60 -2.38 -0.02 0.50 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 2.53 8.10 -2.39 -0.02 2.51 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 3.66 6.17 -2.39 -0.01 3.64 16 41 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 42 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 43 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.08 2.60 8.10 -2.39 -0.02 2.58 16 46 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.12 1.31 7.13 -2.39 -0.02 1.29 16 49 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 51 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -68.68 411.27 5.54 -63.14 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.88 Total: 14.74 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 8.45 Total: -11.55 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -5.81 Total: -111.63 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -68.68 5.54 -63.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339301708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.523 kcal (2) G-P(sol) polarization free energy of solvation -68.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds