Wall clock time and date at job start Sat Apr 11 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47397 * 2 1 4 4 C 1.52999 * 109.46940 * 240.00503 * 2 1 3 5 5 C 1.53001 * 109.47337 * 65.09156 * 4 2 1 6 6 C 1.52994 * 109.47266 * 66.14710 * 5 4 2 7 7 C 1.53001 * 109.47266 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46991 * 300.00343 * 7 6 5 9 9 C 1.52995 * 109.47098 * 59.99976 * 8 7 6 10 10 C 1.53001 * 109.46991 * 186.15052 * 5 4 2 11 11 C 1.52996 * 109.47538 * 120.00250 * 2 1 3 12 12 N 1.46901 * 109.47310 * 296.99017 * 11 2 1 13 13 C 1.46899 * 110.99706 * 285.96917 * 12 11 2 14 14 C 1.50704 * 109.47236 * 78.52518 * 13 12 11 15 15 H 1.07999 * 119.99641 * 3.38467 * 14 13 12 16 16 C 1.37872 * 120.00135 * 183.38657 * 14 13 12 17 17 N 1.31516 * 120.00047 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00248 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47382 * 89.99735 * 18 16 14 20 20 H 1.48495 * 109.47185 * 210.00293 * 18 16 14 21 21 H 1.48505 * 109.46608 * 329.99881 * 18 16 14 22 22 C 1.46898 * 111.00052 * 162.01754 * 12 11 2 23 23 C 1.50700 * 109.46990 * 189.99566 * 22 12 11 24 24 C 1.38667 * 120.41991 * 269.72461 * 23 22 12 25 25 C 1.38631 * 118.42232 * 179.78232 * 24 23 22 26 26 C 1.38231 * 119.15590 * 0.51356 * 25 24 23 27 27 N 1.31848 * 120.76717 * 359.72351 * 26 25 24 28 28 C 1.31886 * 121.72709 * 0.02562 * 27 26 25 29 29 H 1.08991 * 109.47590 * 53.70799 * 1 2 3 30 30 H 1.09000 * 109.47285 * 173.72164 * 1 2 3 31 31 H 1.09011 * 109.46651 * 293.71016 * 1 2 3 32 32 H 1.09008 * 109.47137 * 305.08960 * 4 2 1 33 33 H 1.08995 * 109.47459 * 185.09595 * 4 2 1 34 34 H 1.09007 * 109.46874 * 306.14706 * 5 4 2 35 35 H 1.09003 * 109.46804 * 60.00494 * 6 5 4 36 36 H 1.09002 * 109.47337 * 300.00556 * 6 5 4 37 37 H 1.09000 * 109.46816 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.46919 * 60.00273 * 7 6 5 39 39 H 1.09005 * 109.46586 * 179.97438 * 8 7 6 40 40 H 1.08994 * 109.47232 * 299.99739 * 8 7 6 41 41 H 1.08998 * 109.47645 * 60.00099 * 9 8 7 42 42 H 1.09002 * 109.47040 * 179.97438 * 9 8 7 43 43 H 1.08994 * 109.47232 * 299.99739 * 10 5 4 44 44 H 1.09000 * 109.47417 * 60.00275 * 10 5 4 45 45 H 1.09006 * 109.47276 * 56.98950 * 11 2 1 46 46 H 1.08996 * 109.47502 * 176.98405 * 11 2 1 47 47 H 1.08997 * 109.47297 * 198.52347 * 13 12 11 48 48 H 1.09005 * 109.47376 * 318.52587 * 13 12 11 49 49 H 0.97000 * 120.00390 * 180.02562 * 17 16 14 50 50 H 1.08999 * 109.47224 * 309.99811 * 22 12 11 51 51 H 1.09002 * 109.47166 * 69.99832 * 22 12 11 52 52 H 1.08004 * 120.79425 * 0.02562 * 24 23 22 53 53 H 1.08000 * 120.42472 * 180.21413 * 25 24 23 54 54 H 1.08006 * 119.61815 * 179.75071 * 26 25 24 55 55 H 1.07993 * 119.62370 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6371 0.0703 -2.4952 6 6 2.3705 1.4130 -2.5057 7 6 1.9682 2.2042 -3.7519 8 6 2.3428 1.4086 -5.0040 9 6 1.6094 0.0660 -4.9935 10 6 2.0113 -0.7250 -3.7476 11 6 2.0401 -0.7213 1.2491 12 7 1.6108 0.0118 2.4476 13 6 2.3922 1.2439 2.6191 14 6 1.8721 2.3032 1.6819 15 1 1.0096 2.1013 1.0640 16 6 2.4972 3.5301 1.6132 17 7 2.0430 4.4548 0.7957 18 14 3.9895 3.8792 2.6813 19 1 5.2226 3.4882 1.9521 20 1 4.0417 5.3285 3.0005 21 1 3.8904 3.0983 3.9405 22 6 1.6973 -0.8372 3.6432 23 6 1.0253 -0.1446 4.8008 24 6 1.7510 0.6913 5.6360 25 6 1.0903 1.3109 6.6854 26 6 -0.2580 1.0681 6.8695 27 7 -0.9153 0.2630 6.0582 28 6 -0.3204 -0.3393 5.0469 29 1 -0.3634 0.6082 -0.8282 30 1 -0.3634 -1.0215 -0.1124 31 1 -0.3633 0.4133 0.9410 32 1 1.6040 -1.7192 -1.2961 33 1 3.1261 -0.8009 -1.2049 34 1 0.5611 0.2441 -2.4831 35 1 3.4465 1.2392 -2.5178 36 1 2.1040 1.9795 -1.6134 37 1 2.4910 3.1606 -3.7595 38 1 0.8922 2.3780 -3.7403 39 1 2.0557 1.9722 -5.8918 40 1 3.4187 1.2349 -5.0156 41 1 0.5334 0.2397 -4.9819 42 1 1.8759 -0.5006 -5.8857 43 1 3.0872 -0.8988 -3.7597 44 1 1.4887 -1.6815 -3.7402 45 1 1.6334 -1.7322 1.2765 46 1 3.1287 -0.7683 1.2225 47 1 2.3004 1.5921 3.6478 48 1 3.4401 1.0436 2.3954 49 1 2.4830 5.3179 0.7470 50 1 1.2003 -1.7879 3.4505 51 1 2.7446 -1.0173 3.8860 52 1 2.8051 0.8589 5.4705 53 1 1.6232 1.9711 7.3537 54 1 -0.7793 1.5437 7.6872 55 1 -0.8915 -0.9923 4.4037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349837607.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:24 Heat of formation + Delta-G solvation = -7.024237 kcal Electronic energy + Delta-G solvation = -29782.415616 eV Core-core repulsion = 26203.205440 eV Total energy + Delta-G solvation = -3579.210176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.237 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12875 -40.01957 -38.67878 -35.83046 -34.64057 -33.38793 -32.56782 -31.63709 -31.29099 -29.95254 -27.56077 -26.86607 -25.42755 -24.44788 -23.58477 -23.34550 -22.38892 -21.40827 -20.62636 -20.25290 -18.75399 -17.93271 -17.26712 -16.76114 -16.51775 -16.32452 -16.08024 -15.64569 -15.35865 -15.15192 -14.88795 -14.82852 -14.52152 -14.47814 -14.16213 -13.97047 -13.87178 -13.81245 -13.58119 -13.36685 -13.06039 -12.96938 -12.69902 -12.62628 -12.49555 -12.22974 -12.03600 -11.95909 -11.91543 -11.84498 -11.60386 -11.49306 -11.30648 -11.12334 -10.93207 -10.74625 -10.70670 -10.58229 -10.42713 -10.34159 -9.85509 -8.91949 -8.15161 -6.10746 0.25319 0.39309 1.30177 1.32641 1.40002 2.37977 2.85780 3.16810 3.41953 3.63083 3.83074 3.88873 3.93085 3.96553 3.97758 4.13490 4.17059 4.26685 4.28288 4.38776 4.46329 4.50441 4.58857 4.60537 4.67246 4.68833 4.72854 4.77430 4.82034 4.85840 4.86117 4.89810 4.93638 4.98722 5.08130 5.12116 5.14025 5.15772 5.22607 5.23883 5.28280 5.31319 5.35935 5.40924 5.41236 5.51685 5.54629 5.59817 5.67755 5.71164 5.84078 5.85077 6.04676 6.15650 6.51653 6.74707 6.96162 7.08822 7.47242 8.98970 Molecular weight = 330.24amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.003708 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.876849 B = 7549.218225 C = 8943.655567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.098 4.098 5 C -0.077 4.077 6 C -0.111 4.111 7 C -0.117 4.117 8 C -0.113 4.113 9 C -0.116 4.116 10 C -0.108 4.108 11 C 0.078 3.922 12 N -0.530 5.530 13 C 0.166 3.834 14 C -0.489 4.489 15 H 0.068 0.932 16 C 0.014 3.986 17 N -0.940 5.940 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.251 1.251 22 C 0.096 3.904 23 C -0.124 4.124 24 C -0.083 4.083 25 C -0.176 4.176 26 C 0.083 3.917 27 N -0.510 5.510 28 C 0.105 3.895 29 H 0.029 0.971 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.017 0.983 47 H 0.029 0.971 48 H -0.022 1.022 49 H 0.259 0.741 50 H 0.103 0.897 51 H 0.040 0.960 52 H 0.128 0.872 53 H 0.156 0.844 54 H 0.179 0.821 55 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 -12.836 -0.956 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 H 0.101 0.899 4 C -0.136 4.136 5 C -0.096 4.096 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.150 4.150 9 C -0.153 4.153 10 C -0.145 4.145 11 C -0.050 4.050 12 N -0.253 5.253 13 C 0.038 3.962 14 C -0.527 4.527 15 H 0.086 0.914 16 C -0.183 4.183 17 N -0.582 5.582 18 Si 0.744 3.256 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.175 1.175 22 C -0.032 4.032 23 C -0.126 4.126 24 C -0.109 4.109 25 C -0.195 4.195 26 C -0.074 4.074 27 N -0.219 5.219 28 C -0.052 4.052 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.036 0.964 47 H 0.047 0.953 48 H -0.004 1.004 49 H 0.068 0.932 50 H 0.121 0.879 51 H 0.058 0.942 52 H 0.146 0.854 53 H 0.173 0.827 54 H 0.196 0.804 55 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.312 -12.696 -0.924 12.733 hybrid contribution 2.545 1.205 0.454 2.852 sum 2.233 -11.491 -0.470 11.716 Atomic orbital electron populations 1.21492 0.95657 1.00035 1.00047 1.21466 0.96044 1.01951 0.92879 0.89888 1.21582 0.99896 0.98694 0.93446 1.21073 0.99432 0.94163 0.94884 1.21509 0.99274 0.96735 0.97339 1.21484 1.00470 0.98133 0.95415 1.21511 1.00393 0.96447 0.96683 1.21514 1.00057 0.95645 0.98095 1.21553 1.01247 0.98336 0.93415 1.22031 0.96373 0.96638 0.89915 1.61877 1.56384 1.05231 1.01810 1.20123 0.90182 0.89028 0.96827 1.21431 1.13777 0.96214 1.21301 0.91397 1.25571 0.99685 0.96379 0.96660 1.70025 1.42686 1.05832 1.39687 0.86148 0.81134 0.77316 0.80991 1.20246 1.21688 1.17492 1.21038 0.98260 0.95964 0.87931 1.20871 0.95844 0.99030 0.96886 1.21724 1.00764 0.94456 0.94000 1.22378 0.96604 1.01256 0.99291 1.23166 0.92000 0.94336 0.97901 1.67680 1.40220 1.08856 1.05162 1.22779 0.91573 0.97015 0.93800 0.95216 0.92449 0.93997 0.90893 0.93109 0.92137 0.93320 0.94566 0.93642 0.93047 0.91328 0.92077 0.92331 0.90449 0.92119 0.90864 0.89975 0.96439 0.95271 1.00413 0.93222 0.87898 0.94223 0.85403 0.82653 0.80365 0.81847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.07 71.98 0.58 -3.52 16 2 C -0.10 -3.78 1.76 -10.80 -0.02 -3.80 16 3 H 0.08 3.85 3.13 -2.39 -0.01 3.84 16 4 C -0.10 -2.87 4.14 30.59 0.13 -2.74 16 5 C -0.08 -2.24 2.07 -10.80 -0.02 -2.27 16 6 C -0.11 -3.89 4.98 30.59 0.15 -3.74 16 7 C -0.12 -3.65 5.92 30.59 0.18 -3.47 16 8 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 9 C -0.12 -2.43 5.92 30.58 0.18 -2.24 16 10 C -0.11 -2.44 5.20 30.58 0.16 -2.28 16 11 C 0.08 2.61 4.40 86.30 0.38 2.99 16 12 N -0.53 -19.74 3.69 -905.36 -3.34 -23.08 16 13 C 0.17 7.45 3.68 85.56 0.32 7.77 16 14 C -0.49 -26.41 7.56 25.60 0.19 -26.22 16 15 H 0.07 4.02 5.41 -2.91 -0.02 4.00 16 16 C 0.01 0.79 5.47 84.65 0.46 1.25 16 17 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 18 Si 0.92 43.56 27.40 68.60 1.88 45.44 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 21 H -0.25 -10.98 6.64 99.48 0.66 -10.32 16 22 C 0.10 2.86 5.13 85.56 0.44 3.30 16 23 C -0.12 -3.89 4.97 -19.77 -0.10 -3.99 16 24 C -0.08 -2.56 8.04 22.47 0.18 -2.38 16 25 C -0.18 -4.76 10.11 22.36 0.23 -4.54 16 26 C 0.08 2.27 11.18 84.69 0.95 3.21 16 27 N -0.51 -16.18 10.36 -195.84 -2.03 -18.21 16 28 C 0.11 3.26 10.86 84.67 0.92 4.18 16 29 H 0.03 1.09 6.75 -2.39 -0.02 1.07 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 1.71 7.07 -2.38 -0.02 1.70 16 32 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.88 6.44 -2.38 -0.02 1.87 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.63 6.50 -2.39 -0.02 1.61 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 2.24 7.77 -2.38 -0.02 2.23 16 46 H 0.02 0.60 7.74 -2.39 -0.02 0.58 16 47 H 0.03 1.33 4.19 -2.39 -0.01 1.32 16 48 H -0.02 -1.00 6.94 -2.38 -0.02 -1.02 16 49 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 50 H 0.10 2.50 7.79 -2.39 -0.02 2.48 16 51 H 0.04 1.13 8.07 -2.39 -0.02 1.11 16 52 H 0.13 3.85 7.61 -2.91 -0.02 3.82 16 53 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 54 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 55 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -64.67 407.26 3.08 -61.59 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.79 Total: 32.23 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 5.49 Total: -40.97 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -5.07 Total: -98.28 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -64.67 3.08 -61.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349837607.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.561 kcal (2) G-P(sol) polarization free energy of solvation -64.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds