Wall clock time and date at job start Sat Apr 11 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00091 * 2 1 4 4 N 1.46902 * 109.47276 * 127.92123 * 3 2 1 5 5 C 1.38574 * 111.00158 * 157.92037 * 4 3 2 6 6 N 1.31216 * 126.47433 * 105.27774 * 5 4 3 7 7 N 1.28534 * 109.85940 * 179.82170 * 6 5 4 8 8 C 1.30286 * 110.05598 * 0.44998 * 7 6 5 9 9 C 1.50698 * 126.35171 * 179.69373 * 8 7 6 10 10 H 1.08997 * 109.47213 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47024 * 300.04155 * 9 8 7 12 12 C 1.52999 * 109.46963 * 60.04081 * 9 8 7 13 13 C 1.50703 * 109.47349 * 175.00183 * 12 9 8 14 14 H 1.08001 * 119.99584 * 359.97438 * 13 12 9 15 15 C 1.37868 * 120.00184 * 180.02562 * 13 12 9 16 16 N 1.31518 * 119.99960 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00238 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47243 * 90.00224 * 17 15 13 19 19 H 1.48498 * 109.47676 * 210.00034 * 17 15 13 20 20 H 1.48495 * 109.47252 * 330.00451 * 17 15 13 21 21 N 1.36457 * 126.47329 * 285.58319 * 5 4 3 22 22 C 1.46496 * 127.13315 * 359.97438 * 21 5 4 23 23 C 1.53003 * 109.47423 * 96.06823 * 22 21 5 24 24 C 1.53001 * 117.49664 * 240.11011 * 23 22 21 25 25 C 1.52997 * 117.50083 * 171.48230 * 23 22 21 26 26 C 1.46907 * 110.99773 * 281.87402 * 4 3 2 27 27 C 1.52995 * 117.51710 * 0.53520 * 26 4 3 28 28 C 1.52999 * 60.00095 * 107.48357 * 27 26 4 29 29 H 1.07998 * 120.00022 * 185.66386 * 1 2 3 30 30 H 1.08005 * 119.99813 * 5.65809 * 1 2 3 31 31 H 1.08004 * 120.00037 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47624 * 7.92323 * 3 2 1 33 33 H 1.09000 * 109.47232 * 247.91710 * 3 2 1 34 34 H 1.09007 * 109.46609 * 59.99779 * 11 9 8 35 35 H 1.08997 * 109.47127 * 179.97438 * 11 9 8 36 36 H 1.08995 * 109.47061 * 299.99559 * 11 9 8 37 37 H 1.09000 * 109.47086 * 295.00191 * 12 9 8 38 38 H 1.09002 * 109.47440 * 55.00334 * 12 9 8 39 39 H 0.97004 * 120.00021 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47314 * 216.06589 * 22 21 5 41 41 H 1.08996 * 109.47669 * 336.06413 * 22 21 5 42 42 H 1.09002 * 115.54701 * 25.80714 * 23 22 21 43 43 H 1.08995 * 117.49963 * 359.97438 * 24 23 22 44 44 H 1.09000 * 117.49860 * 145.01757 * 24 23 22 45 45 H 1.08995 * 117.49966 * 214.97429 * 25 23 22 46 46 H 1.08994 * 117.49793 * 359.97438 * 25 23 22 47 47 H 1.08999 * 115.54401 * 214.83234 * 26 4 3 48 48 H 1.09002 * 117.49525 * 214.96821 * 27 26 4 49 49 H 1.09000 * 117.50175 * 359.97438 * 27 26 4 50 50 H 1.09002 * 117.49655 * 252.51454 * 28 27 26 51 51 H 1.08997 * 117.50135 * 107.48827 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0455 1.3035 1.0926 5 6 4.0622 2.2128 0.8478 6 7 4.2233 3.3779 1.4294 7 7 5.2722 3.9570 0.9640 8 6 5.8324 3.2061 0.0585 9 6 7.0767 3.5316 -0.7268 10 1 7.3006 2.7116 -1.4091 11 6 6.8528 4.8156 -1.5281 12 6 8.2499 3.7289 0.2353 13 6 9.5177 3.9328 -0.5535 14 1 9.4895 3.9222 -1.6331 15 6 10.7137 4.1317 0.1029 16 7 11.8200 4.3101 -0.5855 17 14 10.7626 4.1492 1.9701 18 1 11.0015 2.7722 2.4721 19 1 11.8587 5.0401 2.4284 20 1 9.4664 4.6492 2.4946 21 7 5.0815 2.0682 -0.0477 22 6 5.3219 0.9298 -0.9379 23 6 4.7277 1.2258 -2.3164 24 6 3.6434 0.2798 -2.8362 25 6 5.0456 0.2463 -3.4479 26 6 2.3975 1.5731 2.3832 27 6 0.8827 1.7874 2.3824 28 6 1.4720 0.4937 2.9480 29 1 -0.5400 -0.9307 0.0923 30 1 -0.5400 0.9308 -0.0922 31 1 1.8500 -0.9353 -0.0004 32 1 1.3638 2.1287 0.1417 33 1 2.5798 1.4265 -0.9523 34 1 6.6290 5.6355 -0.8455 35 1 7.7529 5.0513 -2.0958 36 1 6.0171 4.6750 -2.2135 37 1 8.0653 4.6037 0.8588 38 1 8.3534 2.8472 0.8678 39 1 12.6615 4.4497 -0.1236 40 1 6.3949 0.7631 -1.0330 41 1 4.8512 0.0385 -0.5231 42 1 4.6409 2.2814 -2.5740 43 1 3.3537 -0.5537 -2.1964 44 1 2.8430 0.7129 -3.4360 45 1 5.1674 0.6573 -4.4500 46 1 5.6783 -0.6088 -3.2103 47 1 2.9875 2.1523 3.0934 48 1 0.4760 2.5076 3.0923 49 1 0.3665 1.7288 1.4242 50 1 1.3435 -0.4163 2.3619 51 1 1.4529 0.3628 4.0300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518260607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:38 Heat of formation + Delta-G solvation = 167.599768 kcal Electronic energy + Delta-G solvation = -29556.526562 eV Core-core repulsion = 25881.348308 eV Total energy + Delta-G solvation = -3675.178255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.212 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.76644 -39.51367 -37.97189 -35.49503 -34.62411 -34.12857 -33.39026 -32.09981 -28.78645 -27.67682 -27.45986 -26.01199 -23.97471 -22.84560 -22.71317 -22.50742 -21.81370 -20.87255 -20.54064 -19.66748 -18.97070 -17.65029 -17.01572 -16.81829 -16.35268 -15.74972 -15.14283 -14.72219 -14.62126 -14.49869 -14.21253 -14.08710 -13.70696 -13.47593 -13.28509 -12.95091 -12.56006 -12.31606 -12.15995 -12.02033 -11.81900 -11.78231 -11.60907 -11.42512 -11.24165 -11.10956 -11.04288 -10.80581 -10.72472 -10.58358 -10.39925 -10.20656 -10.06954 -9.99303 -9.85642 -9.72133 -9.61514 -9.24512 -9.15146 -8.53622 -8.06983 -6.05305 -4.03762 1.70526 2.07188 2.38143 3.18329 3.33932 3.38628 3.42194 3.50513 3.51457 3.82177 4.35430 4.45875 4.47667 4.54481 4.60879 4.61639 4.65004 4.80187 4.83744 4.87145 4.96296 5.02315 5.10703 5.23309 5.28669 5.31398 5.35886 5.39408 5.42367 5.45691 5.58138 5.60867 5.72228 5.79226 5.82311 5.90353 5.93871 5.95408 6.04131 6.18025 6.20195 6.21111 6.29650 6.59594 6.64175 6.71361 6.78928 7.00123 7.18644 7.33528 7.42013 7.75560 8.48909 8.97138 9.11851 9.57443 11.07268 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.003618 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.390660 B = 7738.132926 C = 8980.080776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.139 4.139 3 C 0.069 3.931 4 N -0.418 5.418 5 C 0.333 3.667 6 N -0.317 5.317 7 N -0.287 5.287 8 C 0.213 3.787 9 C 0.009 3.991 10 H 0.079 0.921 11 C -0.126 4.126 12 C 0.001 3.999 13 C -0.518 4.518 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.902 5.902 17 Si 0.872 3.128 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.261 1.261 21 N -0.472 5.472 22 C 0.140 3.860 23 C -0.177 4.177 24 C -0.177 4.177 25 C -0.162 4.162 26 C 0.036 3.964 27 C -0.211 4.211 28 C -0.166 4.166 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.009 0.991 39 H 0.263 0.737 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.131 0.869 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.100 0.900 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.367 -11.880 -2.181 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.158 4.158 3 C -0.058 4.058 4 N -0.140 5.140 5 C -0.023 4.023 6 N -0.161 5.161 7 N -0.125 5.125 8 C -0.054 4.054 9 C -0.012 4.012 10 H 0.097 0.903 11 C -0.184 4.184 12 C -0.038 4.038 13 C -0.556 4.556 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.540 5.540 17 Si 0.699 3.301 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.185 1.185 21 N -0.165 5.165 22 C 0.016 3.984 23 C -0.196 4.196 24 C -0.214 4.214 25 C -0.200 4.200 26 C -0.073 4.073 27 C -0.249 4.249 28 C -0.204 4.204 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.149 0.851 48 H 0.115 0.885 49 H 0.125 0.875 50 H 0.119 0.881 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.203 -11.138 -1.218 25.767 hybrid contribution 0.078 -0.578 0.156 0.604 sum -23.125 -11.716 -1.062 25.945 Atomic orbital electron populations 1.23839 0.95698 1.02185 1.00743 1.22767 0.95503 0.97984 0.99538 1.21653 0.93952 0.96198 0.93954 1.58305 1.09159 1.43393 1.03116 1.22220 0.92361 0.92826 0.94868 1.74579 1.13919 1.02646 1.24990 1.74016 1.04111 1.24627 1.09715 1.25608 0.97502 0.83365 0.98938 1.19751 0.86795 0.98906 0.95784 0.90298 1.21676 1.01154 0.96424 0.99142 1.19598 0.92281 0.97167 0.94708 1.21015 0.90026 1.49633 0.94879 0.90557 1.24930 0.95564 0.94440 0.98074 1.69900 0.98881 1.49582 1.35668 0.86883 0.78354 0.78239 0.86607 1.20444 1.21290 1.18542 1.46222 1.20939 1.17688 1.31698 1.21440 1.03090 0.86876 0.86965 1.22666 1.04452 0.98149 0.94298 1.23123 0.92567 1.01764 1.03968 1.22973 0.98404 1.01113 0.97479 1.22509 0.90906 1.02847 0.90998 1.23661 0.96700 1.00602 1.03936 1.23187 1.02654 0.93766 1.00793 0.87859 0.88503 0.86634 0.91844 0.88959 0.92145 0.90157 0.94878 0.95035 0.97270 0.92696 0.87783 0.88251 0.87079 0.88391 0.88688 0.88161 0.88167 0.85110 0.88504 0.87469 0.88122 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.17 12.60 29.01 0.37 -0.80 16 2 C -0.14 -1.05 7.13 -36.03 -0.26 -1.30 16 3 C 0.07 0.69 5.02 -4.98 -0.02 0.66 16 4 N -0.42 -5.21 4.60 -168.30 -0.77 -5.99 16 5 C 0.33 5.35 6.76 -318.88 -2.15 3.19 16 6 N -0.32 -6.10 11.07 30.31 0.34 -5.77 16 7 N -0.29 -6.04 12.18 32.99 0.40 -5.64 16 8 C 0.21 4.05 6.58 -154.02 -1.01 3.03 16 9 C 0.01 0.17 2.71 -91.77 -0.25 -0.08 16 10 H 0.08 1.45 7.10 -51.93 -0.37 1.08 16 11 C -0.13 -2.33 8.99 37.16 0.33 -2.00 16 12 C 0.00 0.02 3.50 -27.88 -0.10 -0.08 16 13 C -0.52 -14.17 8.96 -34.44 -0.31 -14.47 16 14 H 0.08 2.18 7.30 -52.49 -0.38 1.80 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 17 Si 0.87 22.09 27.47 -169.99 -4.67 17.42 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 21 N -0.47 -7.40 2.81 -114.09 -0.32 -7.72 16 22 C 0.14 1.66 5.76 -4.04 -0.02 1.64 16 23 C -0.18 -1.78 5.10 -90.62 -0.46 -2.24 16 24 C -0.18 -1.37 8.63 -26.72 -0.23 -1.60 16 25 C -0.16 -1.33 10.25 -26.73 -0.27 -1.60 16 26 C 0.04 0.43 5.78 -67.71 -0.39 0.03 16 27 C -0.21 -1.97 9.04 -26.73 -0.24 -2.21 16 28 C -0.17 -1.49 9.81 -26.73 -0.26 -1.76 16 29 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 30 H 0.10 0.59 7.14 -52.48 -0.37 0.21 16 31 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.06 0.67 5.82 -51.93 -0.30 0.36 16 33 H 0.09 0.95 4.76 -51.93 -0.25 0.71 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.57 6.95 -51.93 -0.36 1.20 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 38 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.10 1.27 7.51 -51.93 -0.39 0.88 16 41 H 0.10 1.04 7.82 -51.93 -0.41 0.63 16 42 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.10 0.68 8.03 -51.93 -0.42 0.27 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.13 1.83 7.39 -51.93 -0.38 1.45 16 48 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.11 0.92 3.31 -51.93 -0.17 0.75 16 50 H 0.10 0.85 6.34 -51.93 -0.33 0.52 16 51 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -32.17 398.72 -11.93 -44.10 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.30 Total: 1.73 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -5.39 Total: -17.63 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.42 Total: -51.63 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.17 -11.93 -44.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518260607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.699 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds