Wall clock time and date at job start Sat Apr 11 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34236 * 116.99763 * 2 1 4 4 O 1.20817 * 120.00019 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99896 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47255 * 179.97438 * 5 3 2 7 7 C 1.36942 * 119.99962 * 270.00487 * 6 5 3 8 8 H 1.08004 * 119.99482 * 188.64029 * 7 6 5 9 9 C 1.38805 * 119.99950 * 8.63773 * 7 6 5 10 10 N 1.31620 * 120.00290 * 24.74875 * 9 7 6 11 11 Si 1.86809 * 119.99890 * 204.75088 * 9 7 6 12 12 H 1.48502 * 109.46915 * 59.99784 * 11 9 7 13 13 H 1.48495 * 109.46914 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46999 * 300.00200 * 11 9 7 15 15 C 1.46496 * 119.99972 * 89.99809 * 6 5 3 16 16 C 1.50699 * 109.47510 * 274.07050 * 15 6 5 17 17 N 1.30850 * 125.89979 * 270.32890 * 16 15 6 18 18 N 1.40073 * 108.22217 * 180.09874 * 17 16 15 19 19 C 1.46504 * 126.03430 * 179.87773 * 18 17 16 20 20 C 1.35017 * 107.93090 * 359.61465 * 18 17 16 21 21 C 1.35361 * 107.72762 * 0.22769 * 20 18 17 22 22 Br 1.89103 * 126.04324 * 179.97438 * 21 20 18 23 23 H 1.08997 * 109.47652 * 299.99846 * 1 2 3 24 24 H 1.09004 * 109.47308 * 60.00365 * 1 2 3 25 25 H 1.09004 * 109.47036 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47079 * 60.00089 * 5 3 2 27 27 H 1.09004 * 109.47301 * 300.00231 * 5 3 2 28 28 H 0.96996 * 119.99749 * 180.02562 * 10 9 7 29 29 H 1.09005 * 109.47093 * 154.07201 * 15 6 5 30 30 H 1.09002 * 109.47247 * 34.07150 * 15 6 5 31 31 H 1.08992 * 109.47521 * 269.68718 * 19 18 17 32 32 H 1.08999 * 109.47280 * 29.69513 * 19 18 17 33 33 H 1.09009 * 109.46715 * 149.68827 * 19 18 17 34 34 H 1.07997 * 126.13671 * 180.21045 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1761 3.3357 -1.1865 8 1 4.6145 4.3228 -1.1921 9 6 3.8100 2.7319 -2.3815 10 7 2.8741 1.8065 -2.3916 11 14 4.6456 3.2327 -3.9754 12 1 6.1038 2.9711 -3.8733 13 1 4.0794 2.4450 -5.0998 14 1 4.4182 4.6796 -4.2201 15 6 4.1887 3.3831 1.2682 16 6 2.8759 3.9424 1.7527 17 7 2.3924 5.1238 1.4654 18 7 1.1567 5.2602 2.1107 19 6 0.2808 6.4333 2.0562 20 6 0.9126 4.1174 2.7871 21 6 1.9606 3.2854 2.5823 22 35 2.1537 1.5436 3.2927 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.9563 0.7807 -0.8892 27 1 3.9557 0.7810 0.8908 28 1 2.6185 1.3843 -3.2266 29 1 4.8982 4.1974 1.1205 30 1 4.5830 2.6876 2.0091 31 1 0.5331 7.1133 2.8697 32 1 0.4146 6.9427 1.1020 33 1 -0.7574 6.1164 2.1564 34 1 0.0383 3.9052 3.3844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432812613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:45 Heat of formation + Delta-G solvation = 37.750239 kcal Electronic energy + Delta-G solvation = -21906.995198 eV Core-core repulsion = 18504.107764 eV Total energy + Delta-G solvation = -3402.887434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 331.032 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57977 -38.69526 -36.00103 -34.36787 -33.14499 -31.31137 -30.90960 -28.83498 -28.18542 -27.04194 -25.86369 -24.74061 -22.02476 -20.56210 -19.67483 -19.05062 -16.86054 -16.46586 -15.98117 -15.53417 -14.99060 -14.88901 -14.57155 -13.91285 -13.64803 -13.48493 -13.08089 -12.70379 -12.37096 -12.26757 -12.04177 -11.92067 -11.45149 -10.95887 -10.89694 -10.80447 -10.39555 -10.35916 -10.27655 -10.06003 -9.92153 -9.49464 -9.37182 -8.95864 -8.69625 -8.40822 -7.76607 -7.12443 -5.88857 -3.15504 2.17838 2.36792 3.17312 3.30359 3.41089 3.46117 3.49276 4.12144 4.24978 4.54748 4.89495 5.08143 5.29918 5.30963 5.47948 5.52860 5.61948 5.86299 5.92069 5.99728 6.11273 6.20502 6.44137 6.46089 6.58277 6.83326 7.11637 7.15643 7.39877 7.75195 7.98445 8.17497 8.33279 9.05543 9.59372 9.76890 10.14110 11.21699 Molecular weight = 331.03amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.007158 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.829577 B = 3910.786764 C = 4773.395678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.382 6.382 3 C 0.473 3.527 4 O -0.497 6.497 5 C 0.187 3.813 6 N -0.550 5.550 7 C -0.246 4.246 8 H 0.084 0.916 9 C 0.002 3.998 10 N -0.901 5.901 11 Si 0.910 3.090 12 H -0.282 1.282 13 H -0.292 1.292 14 H -0.285 1.285 15 C 0.208 3.792 16 C 0.114 3.886 17 N -0.275 5.275 18 N -0.378 5.378 19 C 0.109 3.891 20 C 0.079 3.921 21 C -0.213 4.213 22 Br -0.042 7.042 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.053 0.947 28 H 0.257 0.743 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 -0.011 12.590 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.300 6.300 3 C 0.312 3.688 4 O -0.381 6.381 5 C 0.058 3.942 6 N -0.268 5.268 7 C -0.375 4.375 8 H 0.101 0.899 9 C -0.196 4.196 10 N -0.546 5.546 11 Si 0.740 3.260 12 H -0.209 1.209 13 H -0.218 1.218 14 H -0.211 1.211 15 C 0.079 3.921 16 C -0.058 4.058 17 N -0.097 5.097 18 N -0.159 5.159 19 C -0.033 4.033 20 C -0.070 4.070 21 C -0.304 4.304 22 Br 0.041 6.959 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.129 0.871 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.187 0.851 12.038 12.774 hybrid contribution -0.909 0.021 -0.834 1.234 sum -5.096 0.872 11.204 12.339 Atomic orbital electron populations 1.22746 0.80439 1.00796 1.00830 1.86523 1.20409 1.37048 1.86002 1.25073 0.93135 0.80226 0.70342 1.90477 1.66333 1.36163 1.45077 1.20545 0.86163 0.86122 1.01399 1.44496 1.74359 1.06895 1.01049 1.19338 1.33773 1.01861 0.82532 0.89862 1.24765 0.97347 0.99500 0.98008 1.69860 1.27829 1.30438 1.26432 0.86223 0.79497 0.77739 0.82545 1.20851 1.21812 1.21118 1.19704 0.88766 0.95448 0.88184 1.23698 0.99634 0.90272 0.92233 1.77466 0.93945 1.20232 1.18065 1.48391 1.17097 1.12538 1.37901 1.21712 0.92015 0.85701 1.03844 1.21995 0.98993 0.87479 0.98528 1.21459 1.01149 0.94464 1.13378 1.96464 1.98001 1.17342 1.84107 0.93854 0.93395 0.90603 0.87079 0.92878 0.93247 0.90778 0.91415 0.91285 0.89440 0.90224 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 10.56 101.05 1.07 1.96 16 2 O -0.38 -8.59 10.57 -39.27 -0.41 -9.00 16 3 C 0.47 11.54 4.50 36.00 0.16 11.71 16 4 O -0.50 -13.42 13.20 -18.74 -0.25 -13.67 16 5 C 0.19 4.43 5.58 -5.20 -0.03 4.40 16 6 N -0.55 -13.44 2.09 -175.99 -0.37 -13.81 16 7 C -0.25 -6.63 9.70 -15.06 -0.15 -6.78 16 8 H 0.08 2.24 7.89 -52.48 -0.41 1.82 16 9 C 0.00 0.04 4.90 -17.43 -0.09 -0.04 16 10 N -0.90 -25.63 8.95 55.49 0.50 -25.13 16 11 Si 0.91 21.79 29.62 -169.99 -5.04 16.76 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.21 4.40 6.10 -5.20 -0.03 4.37 16 16 C 0.11 2.44 5.57 -82.38 -0.46 1.98 16 17 N -0.28 -6.03 12.57 33.68 0.42 -5.60 16 18 N -0.38 -6.77 4.01 -68.13 -0.27 -7.05 16 19 C 0.11 1.34 11.47 59.85 0.69 2.03 16 20 C 0.08 1.36 11.46 -17.18 -0.20 1.17 16 21 C -0.21 -4.10 5.00 -39.98 -0.20 -4.30 16 22 Br -0.04 -0.71 32.30 -68.01 -2.20 -2.91 16 23 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 24 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.11 2.85 6.30 -51.93 -0.33 2.52 16 27 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.07 1.51 7.97 -51.93 -0.41 1.09 16 30 H 0.07 1.26 7.67 -51.93 -0.40 0.86 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.17 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -33.78 312.44 -6.20 -39.98 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.06 Total: -0.76 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 0.77 Total: 16.48 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.28 Total: -51.59 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.66 Total: -22.67 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.04 Total: 16.76 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.20 Total: -2.91 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.78 -6.20 -39.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432812613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.731 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds