Wall clock time and date at job start Sat Apr 11 2020 02:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99912 * 2 1 4 4 C 1.50704 * 109.46648 * 274.99650 * 3 2 1 5 5 H 1.07997 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00019 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00212 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99783 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47615 * 89.99760 * 8 6 4 10 10 H 1.48500 * 109.47095 * 209.99838 * 8 6 4 11 11 H 1.48503 * 109.47227 * 329.99157 * 8 6 4 12 12 S 1.65600 * 120.00292 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40055 * 156.46193 * 12 2 1 14 14 O 1.42097 * 106.40082 * 23.54834 * 12 2 1 15 15 N 1.65600 * 107.21941 * 270.00188 * 12 2 1 16 16 C 1.46496 * 119.99728 * 65.00115 * 15 12 2 17 17 C 1.50706 * 109.47106 * 164.99627 * 16 15 12 18 18 N 1.29023 * 124.91374 * 89.71753 * 17 16 15 19 19 C 1.31778 * 117.12717 * 179.81330 * 18 17 16 20 20 C 1.50700 * 122.75541 * 180.22488 * 19 18 17 21 21 C 1.53006 * 117.49912 * 163.88994 * 20 19 18 22 22 C 1.52998 * 60.00031 * 252.51503 * 21 20 19 23 23 C 1.33646 * 114.49810 * 0.47807 * 19 18 17 24 24 S 1.70968 * 124.91703 * 270.02780 * 17 16 15 25 25 H 1.08997 * 109.47194 * 270.00229 * 1 2 3 26 26 H 1.08998 * 109.47121 * 30.01106 * 1 2 3 27 27 H 1.09002 * 109.46535 * 150.00755 * 1 2 3 28 28 H 1.09001 * 109.47022 * 34.99070 * 3 2 1 29 29 H 1.08993 * 109.47567 * 155.00030 * 3 2 1 30 30 H 0.97002 * 120.00089 * 180.02562 * 7 6 4 31 31 H 0.96998 * 120.00167 * 244.99885 * 15 12 2 32 32 H 1.09001 * 109.47001 * 44.99918 * 16 15 12 33 33 H 1.09000 * 109.47574 * 285.00134 * 16 15 12 34 34 H 1.09001 * 115.54884 * 309.60371 * 20 19 18 35 35 H 1.09000 * 117.49623 * 0.02562 * 21 20 19 36 36 H 1.09001 * 117.49423 * 145.02172 * 21 20 19 37 37 H 1.09005 * 117.49700 * 252.51079 * 22 21 20 38 38 H 1.09001 * 117.51736 * 107.48304 * 22 21 20 39 39 H 1.07993 * 126.04103 * 179.71684 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7656 -1.4155 5 1 1.9290 1.1933 -2.2332 6 6 2.9997 2.9508 -1.6665 7 7 3.1258 3.3841 -2.9018 8 14 3.7138 3.9403 -0.2521 9 1 5.1110 3.5056 0.0004 10 1 3.6998 5.3836 -0.6011 11 1 2.8979 3.7184 0.9687 12 16 2.2931 -1.4341 0.0006 13 8 3.5760 -1.1569 -0.5439 14 8 1.4115 -2.4067 -0.5435 15 7 2.5382 -1.8580 1.5826 16 6 1.3947 -2.1768 2.4410 17 6 1.8802 -2.8729 3.6865 18 7 2.2248 -2.2779 4.7782 19 6 2.6237 -3.0391 5.7772 20 6 3.0497 -2.4787 7.1097 21 6 3.1267 -3.4474 8.2915 22 6 1.9978 -2.4173 8.2190 23 6 2.6247 -4.3486 5.5100 24 16 2.0611 -4.5646 3.8546 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3632 -0.8901 -0.5137 28 1 1.6500 2.0044 0.5893 29 1 3.1857 1.1179 0.4343 30 1 3.5892 4.2177 -3.0784 31 1 3.4388 -1.8951 1.9408 32 1 0.7081 -2.8309 1.9035 33 1 0.8793 -1.2567 2.7164 34 1 3.7850 -1.6751 7.0683 35 1 2.8697 -4.4901 8.1051 36 1 3.9131 -3.2814 9.0278 37 1 2.0414 -1.5736 8.9078 38 1 0.9976 -2.7820 7.9850 39 1 2.9195 -5.1353 6.1886 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122933607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:44:31 Heat of formation + Delta-G solvation = 5.674989 kcal Electronic energy + Delta-G solvation = -23707.788885 eV Core-core repulsion = 20098.567922 eV Total energy + Delta-G solvation = -3609.220963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.081 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43835 -37.29812 -36.74830 -35.68247 -35.29367 -35.23204 -32.38455 -30.52198 -28.40657 -27.35605 -25.23174 -25.06093 -22.76398 -21.97366 -21.77560 -19.72253 -19.18039 -18.33587 -17.39198 -16.99596 -16.70694 -16.31727 -16.11279 -15.57501 -15.14408 -14.62738 -14.27542 -14.23468 -13.67068 -13.56879 -13.21555 -13.06609 -12.85874 -12.53622 -12.36844 -11.94723 -11.78952 -11.74808 -11.62622 -11.52516 -11.36398 -11.25335 -11.00010 -10.83004 -10.69463 -10.46668 -10.25036 -9.97419 -9.72815 -9.59224 -9.50499 -9.01799 -8.58966 -8.15864 -6.07889 -4.07456 0.29630 1.00329 1.12318 1.43711 2.38356 3.28155 3.31089 3.33800 3.35227 3.41875 3.71055 3.99494 4.31124 4.39164 4.47886 4.55172 4.79329 4.81116 4.87626 5.01064 5.21763 5.22347 5.22799 5.29903 5.43700 5.49725 5.67092 5.70581 5.74022 5.81615 5.90386 6.18352 6.44235 6.71796 6.89581 7.08619 7.36659 7.45183 7.57875 8.48766 8.96640 9.51105 11.05602 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.003300 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.992931 B = 8483.032963 C = 9625.660913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.988 5.988 3 C 0.227 3.773 4 C -0.533 4.533 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.264 1.264 12 S 2.783 3.217 13 O -0.955 6.955 14 O -0.990 6.990 15 N -1.131 6.131 16 C 0.200 3.800 17 C 0.041 3.959 18 N -0.450 5.450 19 C 0.099 3.901 20 C -0.085 4.085 21 C -0.171 4.171 22 C -0.162 4.162 23 C -0.260 4.260 24 S 0.148 5.852 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.416 0.584 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 -15.630 22.113 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.831 5.831 3 C 0.104 3.896 4 C -0.572 4.572 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.189 1.189 12 S 2.790 3.210 13 O -0.939 6.939 14 O -0.973 6.973 15 N -0.890 5.890 16 C 0.070 3.930 17 C -0.238 4.238 18 N -0.165 5.165 19 C -0.034 4.034 20 C -0.105 4.105 21 C -0.208 4.208 22 C -0.200 4.200 23 C -0.399 4.399 24 S 0.403 5.597 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.249 0.751 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.001 -16.248 20.467 26.437 hybrid contribution 1.041 1.223 1.945 2.522 sum -2.960 -15.025 22.412 27.144 Atomic orbital electron populations 1.21445 0.79597 1.04165 1.00332 1.57358 1.14545 1.22521 1.88647 1.19458 0.90899 0.80639 0.98632 1.21373 1.36941 1.07038 0.91825 0.90384 1.24865 0.95348 0.97198 0.95539 1.69894 1.42534 1.22023 1.18868 0.86923 0.80444 0.79709 0.83066 1.19810 1.20955 1.18887 1.02008 0.73540 0.72993 0.72482 1.93666 1.40525 1.84719 1.74981 1.93538 1.67502 1.59868 1.76390 1.56417 1.14226 1.86370 1.31977 1.19689 0.88292 0.99872 0.85147 1.26946 1.04176 0.94607 0.98110 1.66008 1.12680 1.38689 0.99105 1.19369 1.00658 0.88515 0.94857 1.20356 1.03080 1.02405 0.84695 1.23048 1.01778 0.96310 0.99711 1.22990 0.94903 1.01653 1.00440 1.26895 1.12052 1.00830 1.00127 1.84177 1.58997 1.08451 1.08082 0.94106 0.89945 0.91132 0.94732 0.95247 0.92509 0.75104 0.88242 0.88569 0.86000 0.88539 0.87931 0.88034 0.88638 0.80511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.68 59.85 0.64 2.09 16 2 N -0.99 -19.46 3.23 -123.05 -0.40 -19.85 16 3 C 0.23 5.31 4.15 -5.19 -0.02 5.29 16 4 C -0.53 -15.15 9.94 -34.44 -0.34 -15.50 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.89 -27.58 13.96 55.43 0.77 -26.81 16 8 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 12 S 2.78 52.47 6.10 -107.50 -0.66 51.82 16 13 O -0.96 -22.17 17.11 -57.18 -0.98 -23.15 16 14 O -0.99 -19.37 16.21 -57.18 -0.93 -20.30 16 15 N -1.13 -16.05 6.05 -11.66 -0.07 -16.12 16 16 C 0.20 2.37 6.82 -5.19 -0.04 2.34 16 17 C 0.04 0.48 6.78 -13.45 -0.09 0.38 16 18 N -0.45 -5.64 10.53 -8.06 -0.08 -5.73 16 19 C 0.10 1.04 6.41 -84.22 -0.54 0.50 16 20 C -0.08 -0.72 6.30 -91.77 -0.58 -1.30 16 21 C -0.17 -1.02 9.91 -26.73 -0.26 -1.28 16 22 C -0.16 -1.13 10.23 -26.73 -0.27 -1.41 16 23 C -0.26 -2.28 10.52 29.12 0.31 -1.97 16 24 S 0.15 1.39 23.18 -107.50 -2.49 -1.10 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 27 H 0.07 1.06 7.02 -51.93 -0.36 0.70 16 28 H 0.03 0.77 7.17 -51.93 -0.37 0.40 16 29 H 0.03 0.69 7.04 -51.93 -0.37 0.33 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.42 5.49 8.64 -34.47 -0.30 5.19 16 32 H 0.10 1.04 7.75 -51.93 -0.40 0.64 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.10 0.49 6.79 -51.93 -0.35 0.14 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.18 1.08 6.96 -52.49 -0.37 0.71 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -35.68 356.46 -10.49 -46.17 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.07 Total: 2.02 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.30 Total: -8.83 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: 0.22 Total: -68.52 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -1.91 Total: -43.45 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 53.87 SS G_CDS: -3.15 Total: 50.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.68 -10.49 -46.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122933607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.844 kcal (2) G-P(sol) polarization free energy of solvation -35.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds