Wall clock time and date at job start Sat Apr 11 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31342 * 1 3 3 Si 1.86803 * 120.00254 * 2 1 4 4 H 1.48495 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46965 * 300.00262 * 3 2 1 6 6 H 1.48496 * 109.46960 * 59.99815 * 3 2 1 7 7 C 1.39024 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00027 * 197.68031 * 7 2 1 9 9 N 1.36875 * 120.00112 * 17.67277 * 7 2 1 10 10 C 1.38250 * 125.62477 * 218.37210 * 9 7 2 11 11 C 1.46714 * 125.44534 * 359.97438 * 10 9 7 12 12 O 1.21592 * 120.00222 * 185.26287 * 11 10 9 13 13 O 1.34870 * 120.00126 * 5.26792 * 11 10 9 14 14 C 1.45205 * 116.99898 * 184.21513 * 13 11 10 15 15 C 1.50694 * 109.46800 * 175.36770 * 14 13 11 16 16 O 1.21236 * 120.00379 * 5.17055 * 15 14 13 17 17 N 1.34780 * 119.99916 * 185.17796 * 15 14 13 18 18 C 1.34780 * 120.00120 * 179.97438 * 17 15 14 19 19 N 1.34773 * 119.99595 * 179.97438 * 18 17 15 20 20 O 1.21533 * 119.99824 * 359.97438 * 18 17 15 21 21 C 1.36210 * 109.10352 * 180.02562 * 10 9 7 22 22 C 1.41657 * 107.74538 * 0.02562 * 21 10 9 23 23 C 1.40040 * 133.33721 * 180.02562 * 22 21 10 24 24 C 1.36570 * 119.82910 * 179.97438 * 23 22 21 25 25 C 1.38867 * 120.60069 * 359.96821 * 24 23 22 26 26 C 1.37838 * 120.64000 * 0.29500 * 25 24 23 27 27 C 1.37826 * 125.61697 * 38.37381 * 9 7 2 28 28 H 0.97006 * 119.99561 * 4.93181 * 1 2 3 29 29 H 1.08999 * 109.47077 * 295.36373 * 14 13 11 30 30 H 1.09000 * 109.46752 * 55.36421 * 14 13 11 31 31 H 0.96998 * 120.00125 * 359.97438 * 17 15 14 32 32 H 0.96998 * 120.00650 * 359.97438 * 19 18 17 33 33 H 0.97004 * 119.99374 * 179.97438 * 19 18 17 34 34 H 1.07998 * 126.12487 * 180.02562 * 21 10 9 35 35 H 1.07997 * 120.08956 * 359.96629 * 23 22 21 36 36 H 1.08003 * 119.69807 * 179.97438 * 24 23 22 37 37 H 1.08005 * 119.67686 * 180.02562 * 25 24 23 38 38 H 1.07996 * 120.09390 * 179.65135 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7074 1.3463 0.0006 5 1 1.8887 2.3964 -1.2125 6 1 1.8887 2.3964 1.2125 7 6 2.0085 -1.2040 -0.0005 8 1 3.0502 -1.2263 0.2835 9 7 1.3726 -2.3612 -0.3609 10 6 1.5600 -3.5992 0.2252 11 6 2.4750 -3.8850 1.3359 12 8 2.6338 -5.0298 1.7137 13 8 3.1401 -2.8779 1.9379 14 6 4.0986 -3.2426 2.9658 15 6 4.8201 -2.0077 3.4406 16 8 4.4891 -0.9163 3.0293 17 7 5.8336 -2.1165 4.3224 18 6 6.4793 -1.0121 4.7467 19 7 7.4924 -1.1210 5.6288 20 8 6.1479 0.0818 4.3337 21 6 0.7601 -4.5114 -0.3941 22 6 0.0390 -3.8350 -1.4086 23 6 -0.9126 -4.2478 -2.3494 24 6 -1.4441 -3.3406 -3.2210 25 6 -1.0501 -2.0095 -3.1834 26 6 -0.1112 -1.5803 -2.2702 27 6 0.4398 -2.4844 -1.3680 28 1 -0.4850 0.8370 -0.0722 29 1 3.5752 -3.7024 3.8041 30 1 4.8197 -3.9497 2.5557 31 1 6.0984 -2.9896 4.6517 32 1 7.7566 -1.9940 5.9587 33 1 7.9573 -0.3261 5.9339 34 1 0.6885 -5.5620 -0.1545 35 1 -1.2253 -5.2808 -2.3857 36 1 -2.1776 -3.6613 -3.9459 37 1 -1.4805 -1.3046 -3.8795 38 1 0.1929 -0.5442 -2.2525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729766607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:44:46 Heat of formation + Delta-G solvation = -76.594150 kcal Electronic energy + Delta-G solvation = -27857.845118 eV Core-core repulsion = 23666.859875 eV Total energy + Delta-G solvation = -4190.985243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23449 -40.53146 -39.45147 -38.14090 -35.98668 -35.80621 -34.82022 -33.58688 -33.56546 -30.70112 -29.56594 -28.88027 -27.93463 -24.88523 -24.03316 -22.74887 -21.02227 -20.68683 -20.44957 -19.34306 -19.03210 -18.18374 -17.61617 -17.18716 -16.65787 -16.07996 -15.94145 -15.68790 -15.36276 -14.86937 -14.75820 -14.60137 -14.17482 -14.06501 -13.38758 -13.19963 -12.92144 -12.75433 -12.54070 -12.31532 -11.94486 -11.69289 -11.22347 -11.12261 -11.02819 -10.75189 -10.52476 -10.41767 -10.27010 -10.22243 -10.19122 -10.06344 -9.79928 -9.69925 -9.09762 -8.65569 -7.21043 -6.91225 -6.55142 -4.42049 1.61187 1.98326 2.02914 2.76997 2.85646 3.10341 3.11536 3.19203 3.20420 3.26947 3.91550 3.95977 4.06781 4.38768 4.53910 4.75229 4.99439 5.06057 5.08376 5.55210 5.74762 5.83629 5.96452 6.11976 6.16264 6.38930 6.45897 6.51971 6.58839 6.74034 6.87189 7.03693 7.09316 7.17708 7.18789 7.47758 7.57662 7.66521 7.88519 7.92061 8.04529 8.19118 8.30901 8.43281 8.81327 9.27492 10.21931 Molecular weight = 331.10amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.003970 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.379903 B = 7050.918367 C = 8773.766900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.059 3.941 3 Si 0.927 3.073 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.121 0.879 9 N -0.232 5.232 10 C -0.027 4.027 11 C 0.549 3.451 12 O -0.527 6.527 13 O -0.310 6.310 14 C 0.050 3.950 15 C 0.511 3.489 16 O -0.424 6.424 17 N -0.690 5.690 18 C 0.697 3.303 19 N -0.859 5.859 20 O -0.529 6.529 21 C -0.161 4.161 22 C -0.130 4.130 23 C -0.086 4.086 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.049 4.049 27 C 0.088 3.912 28 H 0.282 0.718 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.410 0.590 32 H 0.399 0.601 33 H 0.419 0.581 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.446 -5.905 7.477 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.155 4.155 3 Si 0.751 3.249 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.138 0.862 9 N 0.107 4.893 10 C -0.140 4.140 11 C 0.398 3.602 12 O -0.418 6.418 13 O -0.225 6.225 14 C -0.029 4.029 15 C 0.294 3.706 16 O -0.287 6.287 17 N -0.360 5.360 18 C 0.395 3.605 19 N -0.430 5.430 20 O -0.400 6.400 21 C -0.188 4.188 22 C -0.134 4.134 23 C -0.105 4.105 24 C -0.175 4.175 25 C -0.171 4.171 26 C -0.068 4.068 27 C -0.028 4.028 28 H 0.093 0.907 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.245 0.755 32 H 0.227 0.773 33 H 0.252 0.748 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.871 -4.185 7.106 12.863 hybrid contribution 0.849 0.068 0.925 1.257 sum 10.720 -4.117 8.031 14.013 Atomic orbital electron populations 1.70021 1.06511 1.29805 1.38060 1.25608 0.95308 1.00803 0.93791 0.85828 0.80940 0.79910 0.78214 1.17993 1.19935 1.19815 1.20120 0.96495 0.82596 1.47059 0.86152 1.40209 1.25595 1.05256 1.18242 1.18919 1.06471 0.88922 0.99697 1.20150 0.77559 0.82144 0.80345 1.90788 1.64700 1.21881 1.64423 1.86989 1.50101 1.37297 1.48080 1.22469 0.93086 0.94008 0.93313 1.20406 0.79621 0.91632 0.78906 1.90959 1.60085 1.27650 1.50009 1.43972 1.35263 1.10917 1.45820 1.16094 0.80154 0.84259 0.79975 1.43060 1.37512 1.13459 1.48952 1.91161 1.66106 1.24756 1.57965 1.20241 1.00603 0.97901 1.00103 1.17913 1.02049 0.93169 1.00304 1.20038 0.96937 0.98194 0.95361 1.20288 1.02479 0.93782 1.00920 1.20573 1.00118 0.95639 1.00732 1.20128 0.95726 0.98020 0.92928 1.18129 0.97875 0.93938 0.92828 0.90728 0.87715 0.88013 0.75527 0.77313 0.74780 0.84837 0.87675 0.87840 0.87596 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.70 10.90 55.50 0.60 -21.10 16 2 C 0.06 1.52 4.43 -17.47 -0.08 1.44 16 3 Si 0.93 21.00 29.59 -169.99 -5.03 15.97 16 4 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.33 -8.94 8.73 -15.01 -0.13 -9.07 16 8 H 0.12 3.24 6.87 -52.49 -0.36 2.88 16 9 N -0.23 -6.11 2.83 -56.10 -0.16 -6.27 16 10 C -0.03 -0.66 6.76 -82.28 -0.56 -1.21 16 11 C 0.55 12.08 7.90 34.15 0.27 12.35 16 12 O -0.53 -11.12 16.62 -19.34 -0.32 -11.44 16 13 O -0.31 -6.44 7.57 -47.63 -0.36 -6.80 16 14 C 0.05 0.70 5.98 36.00 0.22 0.92 16 15 C 0.51 7.84 7.84 -10.99 -0.09 7.75 16 16 O -0.42 -9.31 14.91 -25.35 -0.38 -9.69 16 17 N -0.69 -6.94 5.24 -15.78 -0.08 -7.02 16 18 C 0.70 8.45 8.78 -86.92 -0.76 7.69 16 19 N -0.86 -5.07 8.88 27.63 0.25 -4.82 16 20 O -0.53 -9.97 15.58 -18.47 -0.29 -10.26 16 21 C -0.16 -3.69 10.55 -39.01 -0.41 -4.10 16 22 C -0.13 -3.06 6.16 -106.89 -0.66 -3.72 16 23 C -0.09 -1.75 10.06 -39.51 -0.40 -2.15 16 24 C -0.16 -2.99 9.97 -39.95 -0.40 -3.39 16 25 C -0.15 -3.07 10.02 -39.50 -0.40 -3.46 16 26 C -0.05 -1.15 8.55 -39.41 -0.34 -1.49 16 27 C 0.09 2.26 6.07 -83.83 -0.51 1.75 16 28 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.12 8.09 -51.93 -0.42 0.70 16 31 H 0.41 1.78 8.71 -40.82 -0.36 1.42 16 32 H 0.40 0.72 8.84 -40.82 -0.36 0.36 16 33 H 0.42 2.14 8.93 -40.82 -0.36 1.77 16 34 H 0.13 2.73 8.06 -52.49 -0.42 2.30 16 35 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 37 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 38 H 0.11 2.78 6.45 -52.49 -0.34 2.44 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -38.27 341.83 -8.30 -46.57 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -3.45 Total: 6.40 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -4.24 Total: 3.30 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.61 Total: -39.21 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -1.35 Total: -38.18 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.27 -8.30 -46.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729766607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.022 kcal (2) G-P(sol) polarization free energy of solvation -38.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds