Wall clock time and date at job start Sat Apr 11 2020 02:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30181 * 126.80180 * 2 1 4 4 O 1.20918 * 111.60189 * 180.25726 * 3 2 1 5 5 C 1.34039 * 111.56976 * 359.74622 * 4 3 2 6 6 C 1.50697 * 126.77412 * 180.02562 * 5 4 3 7 7 C 1.35448 * 106.44668 * 359.97438 * 5 4 3 8 8 S 1.76192 * 128.00772 * 179.97438 * 7 5 4 9 9 O 1.42102 * 106.40356 * 336.46121 * 8 7 5 10 10 O 1.42101 * 106.40643 * 203.54301 * 8 7 5 11 11 N 1.65599 * 107.21969 * 90.00047 * 8 7 5 12 12 C 1.46502 * 119.99761 * 65.00361 * 11 8 7 13 13 H 1.09003 * 109.46795 * 334.99675 * 12 11 8 14 14 C 1.52996 * 109.47217 * 94.99808 * 12 11 8 15 15 C 1.50703 * 109.47000 * 214.99998 * 12 11 8 16 16 O 1.21289 * 119.99823 * 359.97438 * 15 12 11 17 17 N 1.34770 * 119.99871 * 179.72483 * 15 12 11 18 18 C 1.46494 * 120.00358 * 359.97438 * 17 15 12 19 19 C 1.37104 * 119.99961 * 180.02562 * 17 15 12 20 20 H 1.07999 * 119.99648 * 22.84726 * 19 17 15 21 21 C 1.38948 * 119.99901 * 202.85383 * 19 17 15 22 22 N 1.31409 * 120.00200 * 11.04480 * 21 19 17 23 23 Si 1.86799 * 119.99779 * 191.04306 * 21 19 17 24 24 H 1.48498 * 109.47259 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46954 * 120.00023 * 23 21 19 26 26 H 1.48506 * 109.47238 * 240.00051 * 23 21 19 27 27 H 1.09005 * 109.46813 * 270.16319 * 1 2 3 28 28 H 1.09005 * 109.47425 * 30.15985 * 1 2 3 29 29 H 1.08999 * 109.46859 * 150.16519 * 1 2 3 30 30 H 1.09000 * 109.47282 * 269.99615 * 6 5 4 31 31 H 1.09002 * 109.47331 * 30.00434 * 6 5 4 32 32 H 1.09004 * 109.47129 * 149.99658 * 6 5 4 33 33 H 0.96995 * 120.00391 * 244.99960 * 11 8 7 34 34 H 1.09003 * 109.47347 * 60.00204 * 14 12 11 35 35 H 1.09006 * 109.47160 * 180.02562 * 14 12 11 36 36 H 1.08994 * 109.47515 * 299.99996 * 14 12 11 37 37 H 1.08996 * 109.47708 * 92.91196 * 18 17 15 38 38 H 1.09004 * 109.47200 * 212.91930 * 18 17 15 39 39 H 1.09004 * 109.47010 * 332.91436 * 18 17 15 40 40 H 0.96998 * 120.00611 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6068 -0.0036 6 6 4.9022 -1.3694 -0.0081 7 6 2.3540 -1.1320 0.0037 8 16 1.8923 -2.8324 0.0083 9 8 2.9903 -3.5478 -0.5412 10 8 0.5782 -2.8929 -0.5291 11 7 1.7723 -3.3035 1.5913 12 6 0.7446 -2.7162 2.4544 13 1 0.4667 -1.7341 2.0719 14 6 -0.4868 -3.6240 2.4715 15 6 1.2846 -2.5757 3.8544 16 8 2.4164 -2.9316 4.1063 17 7 0.5116 -2.0499 4.8251 18 6 -0.8533 -1.6145 4.5194 19 6 1.0030 -1.9215 6.0986 20 1 2.0695 -1.8810 6.2643 21 6 0.1290 -1.8437 7.1760 22 7 -1.1470 -2.1086 7.0074 23 14 0.7680 -1.3626 8.8641 24 1 2.2307 -1.1181 8.7885 25 1 0.0819 -0.1268 9.3193 26 1 0.4994 -2.4612 9.8266 27 1 -0.3633 0.0029 1.0277 28 1 -0.3634 0.8886 -0.5163 29 1 -0.3633 -0.8915 -0.5113 30 1 5.2111 -1.5550 -1.0368 31 1 5.6682 -0.7850 0.5016 32 1 4.7674 -2.3201 0.5079 33 1 2.3824 -3.9684 1.9470 34 1 -0.2090 -4.6061 2.8541 35 1 -1.2517 -3.1868 3.1134 36 1 -0.8774 -3.7257 1.4590 37 1 -1.5486 -2.4290 4.7220 38 1 -1.1085 -0.7559 5.1406 39 1 -0.9184 -1.3343 3.4680 40 1 -1.7571 -2.0547 7.7595 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330736310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:46:15 Heat of formation + Delta-G solvation = -35.844253 kcal Electronic energy + Delta-G solvation = -28016.804554 eV Core-core repulsion = 23963.030310 eV Total energy + Delta-G solvation = -4053.774244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.16060 -39.04529 -37.30877 -35.91019 -35.37338 -35.06546 -34.55655 -33.72475 -31.85958 -29.55134 -28.82330 -28.09226 -26.30079 -25.15937 -24.02442 -22.96393 -20.73507 -19.57469 -19.42662 -18.32879 -17.89494 -17.40738 -17.00790 -16.22086 -16.02559 -15.71540 -14.93291 -14.52449 -14.45418 -14.28898 -13.76286 -13.63529 -13.56540 -13.34789 -13.28983 -12.92532 -12.74027 -12.59442 -12.17203 -12.12750 -11.98497 -11.88952 -11.72533 -11.59122 -11.37402 -11.25007 -11.15398 -11.10147 -10.77310 -10.56716 -10.39054 -10.38302 -9.71433 -9.58621 -9.12290 -8.47393 -7.81851 -6.42472 -4.00245 0.36599 0.95589 1.75548 2.76744 3.04462 3.07628 3.19637 3.25990 3.66922 3.70545 3.83556 4.04432 4.12292 4.27903 4.68994 4.83577 4.96545 4.98042 5.12375 5.17578 5.23465 5.37879 5.43144 5.48079 5.53690 5.64088 5.68892 5.74416 6.03639 6.11743 6.18058 6.31106 6.52704 6.74316 7.11487 7.15526 7.46292 7.97385 7.99862 8.34368 9.04910 9.27667 9.80293 10.60793 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.004195 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.262171 B = 6673.610322 C = 6979.977462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.109 3.891 3 N -0.364 5.364 4 O 0.097 5.903 5 C 0.117 3.883 6 C -0.100 4.100 7 C -0.798 4.798 8 S 2.730 3.270 9 O -0.958 6.958 10 O -0.948 6.948 11 N -1.087 6.087 12 C 0.143 3.857 13 H 0.088 0.912 14 C -0.176 4.176 15 C 0.439 3.561 16 O -0.583 6.583 17 N -0.437 5.437 18 C 0.105 3.895 19 C -0.308 4.308 20 H 0.100 0.900 21 C 0.033 3.967 22 N -0.880 5.880 23 Si 0.927 3.073 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.426 0.574 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 1.655 -13.197 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.053 4.053 3 N -0.073 5.073 4 O 0.039 5.961 5 C 0.050 3.950 6 C -0.157 4.157 7 C -0.885 4.885 8 S 2.814 3.186 9 O -0.948 6.948 10 O -0.938 6.938 11 N -0.850 5.850 12 C 0.032 3.968 13 H 0.106 0.894 14 C -0.235 4.235 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.155 5.155 18 C -0.039 4.039 19 C -0.436 4.436 20 H 0.118 0.882 21 C -0.171 4.171 22 N -0.519 5.519 23 Si 0.754 3.246 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.711 2.523 -13.723 14.214 hybrid contribution 0.420 0.030 1.471 1.530 sum 3.131 2.553 -12.252 12.901 Atomic orbital electron populations 1.20727 0.84847 1.06091 1.04883 1.23137 0.98876 0.85997 0.97275 1.73813 0.88827 1.23561 1.21133 1.84845 1.22343 1.22437 1.66439 1.24546 0.97122 0.83916 0.89410 1.20866 0.89444 0.99516 1.05848 1.32997 1.00161 1.26999 1.28348 1.00935 0.73766 0.71685 0.72239 1.93576 1.54621 1.70127 1.76457 1.93551 1.37784 1.85669 1.76799 1.55205 1.45374 1.54695 1.29703 1.20563 0.87777 0.96807 0.91688 0.89408 1.22490 0.96888 1.00619 1.03552 1.19929 0.87667 0.83652 0.86282 1.90500 1.19466 1.54242 1.82532 1.43526 1.12273 1.51439 1.08312 1.21751 0.84615 1.01485 0.96027 1.19705 0.94085 1.48657 0.81110 0.88235 1.25353 0.95322 0.96504 0.99908 1.69974 1.03103 1.46478 1.32335 0.85845 0.79233 0.78148 0.81384 1.19244 1.20597 1.20621 0.88995 0.89548 0.87034 0.87332 0.88401 0.87215 0.73609 0.91588 0.89366 0.90977 0.91350 0.91198 0.95356 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.77 36.01 0.35 -0.95 16 2 C 0.11 1.60 7.30 -82.10 -0.60 1.00 16 3 N -0.36 -5.66 12.07 33.42 0.40 -5.25 16 4 O 0.10 1.38 11.20 17.18 0.19 1.58 16 5 C 0.12 1.53 7.48 -35.31 -0.26 1.27 16 6 C -0.10 -0.95 9.65 36.00 0.35 -0.60 16 7 C -0.80 -11.46 6.20 -39.38 -0.24 -11.70 16 8 S 2.73 39.01 5.73 -107.50 -0.62 38.39 16 9 O -0.96 -14.35 16.19 -57.17 -0.93 -15.28 16 10 O -0.95 -14.36 15.10 -57.17 -0.86 -15.22 16 11 N -1.09 -16.81 5.26 -5.88 -0.03 -16.84 16 12 C 0.14 2.46 2.37 -69.08 -0.16 2.29 16 13 H 0.09 1.37 5.90 -51.93 -0.31 1.06 16 14 C -0.18 -2.74 9.13 37.16 0.34 -2.41 16 15 C 0.44 9.88 7.09 -10.99 -0.08 9.81 16 16 O -0.58 -14.80 15.68 5.55 0.09 -14.71 16 17 N -0.44 -10.47 3.02 -122.20 -0.37 -10.84 16 18 C 0.10 2.15 7.05 59.84 0.42 2.57 16 19 C -0.31 -8.17 9.28 -14.93 -0.14 -8.31 16 20 H 0.10 2.79 7.41 -52.49 -0.39 2.40 16 21 C 0.03 0.83 5.13 -17.47 -0.09 0.74 16 22 N -0.88 -22.21 10.61 55.50 0.59 -21.62 16 23 Si 0.93 20.04 29.57 -169.99 -5.03 15.01 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 27 H 0.09 1.03 7.49 -51.93 -0.39 0.64 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.31 6.11 -51.93 -0.32 0.99 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 1.11 7.08 -51.93 -0.37 0.74 16 33 H 0.43 6.48 8.21 -34.47 -0.28 6.20 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.37 4.62 -51.93 -0.24 1.13 16 36 H 0.07 0.99 7.64 -51.93 -0.40 0.59 16 37 H 0.07 1.44 6.49 -51.93 -0.34 1.10 16 38 H 0.07 1.53 7.13 -51.93 -0.37 1.16 16 39 H 0.03 0.47 5.79 -51.93 -0.30 0.16 16 40 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -32.46 340.95 -6.06 -38.52 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.52 Total: 7.42 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.12 Total: -6.29 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.59 Total: -54.55 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -1.51 Total: -43.64 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 16 Polarization: 39.01 SS G_CDS: -0.62 Total: 38.39 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.46 -6.06 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330736310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.673 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds