Wall clock time and date at job start Sat Apr 11 2020 02:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30181 * 126.80180 * 2 1 4 4 O 1.20918 * 111.60189 * 180.25726 * 3 2 1 5 5 C 1.34039 * 111.56976 * 359.74622 * 4 3 2 6 6 C 1.50697 * 126.77412 * 180.02562 * 5 4 3 7 7 C 1.35448 * 106.44668 * 359.97438 * 5 4 3 8 8 S 1.76192 * 128.00772 * 179.97438 * 7 5 4 9 9 O 1.42102 * 106.40356 * 336.46121 * 8 7 5 10 10 O 1.42101 * 106.40643 * 203.54301 * 8 7 5 11 11 N 1.65599 * 107.21969 * 90.00047 * 8 7 5 12 12 C 1.46502 * 119.99761 * 65.00361 * 11 8 7 13 13 H 1.09003 * 109.46795 * 334.99675 * 12 11 8 14 14 C 1.52996 * 109.47217 * 94.99808 * 12 11 8 15 15 C 1.50703 * 109.47000 * 214.99998 * 12 11 8 16 16 O 1.21289 * 119.99823 * 359.97438 * 15 12 11 17 17 N 1.34770 * 119.99871 * 179.72483 * 15 12 11 18 18 C 1.46494 * 120.00358 * 359.97438 * 17 15 12 19 19 C 1.37104 * 119.99961 * 180.02562 * 17 15 12 20 20 H 1.07999 * 119.99648 * 22.84726 * 19 17 15 21 21 C 1.38948 * 119.99901 * 202.85383 * 19 17 15 22 22 N 1.31409 * 120.00200 * 11.04480 * 21 19 17 23 23 Si 1.86799 * 119.99779 * 191.04306 * 21 19 17 24 24 H 1.48498 * 109.47259 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46954 * 120.00023 * 23 21 19 26 26 H 1.48506 * 109.47238 * 240.00051 * 23 21 19 27 27 H 1.09005 * 109.46813 * 270.16319 * 1 2 3 28 28 H 1.09005 * 109.47425 * 30.15985 * 1 2 3 29 29 H 1.08999 * 109.46859 * 150.16519 * 1 2 3 30 30 H 1.09000 * 109.47282 * 269.99615 * 6 5 4 31 31 H 1.09002 * 109.47331 * 30.00434 * 6 5 4 32 32 H 1.09004 * 109.47129 * 149.99658 * 6 5 4 33 33 H 0.96995 * 120.00391 * 244.99960 * 11 8 7 34 34 H 1.09003 * 109.47347 * 60.00204 * 14 12 11 35 35 H 1.09006 * 109.47160 * 180.02562 * 14 12 11 36 36 H 1.08994 * 109.47515 * 299.99996 * 14 12 11 37 37 H 1.08996 * 109.47708 * 92.91196 * 18 17 15 38 38 H 1.09004 * 109.47200 * 212.91930 * 18 17 15 39 39 H 1.09004 * 109.47010 * 332.91436 * 18 17 15 40 40 H 0.96998 * 120.00611 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6068 -0.0036 6 6 4.9022 -1.3694 -0.0081 7 6 2.3540 -1.1320 0.0037 8 16 1.8923 -2.8324 0.0083 9 8 2.9903 -3.5478 -0.5412 10 8 0.5782 -2.8929 -0.5291 11 7 1.7723 -3.3035 1.5913 12 6 0.7446 -2.7162 2.4544 13 1 0.4667 -1.7341 2.0719 14 6 -0.4868 -3.6240 2.4715 15 6 1.2846 -2.5757 3.8544 16 8 2.4164 -2.9316 4.1063 17 7 0.5116 -2.0499 4.8251 18 6 -0.8533 -1.6145 4.5194 19 6 1.0030 -1.9215 6.0986 20 1 2.0695 -1.8810 6.2643 21 6 0.1290 -1.8437 7.1760 22 7 -1.1470 -2.1086 7.0074 23 14 0.7680 -1.3626 8.8641 24 1 2.2307 -1.1181 8.7885 25 1 0.0819 -0.1268 9.3193 26 1 0.4994 -2.4612 9.8266 27 1 -0.3633 0.0029 1.0277 28 1 -0.3634 0.8886 -0.5163 29 1 -0.3633 -0.8915 -0.5113 30 1 5.2111 -1.5550 -1.0368 31 1 5.6682 -0.7850 0.5016 32 1 4.7674 -2.3201 0.5079 33 1 2.3824 -3.9684 1.9470 34 1 -0.2090 -4.6061 2.8541 35 1 -1.2517 -3.1868 3.1134 36 1 -0.8774 -3.7257 1.4590 37 1 -1.5486 -2.4290 4.7220 38 1 -1.1085 -0.7559 5.1406 39 1 -0.9184 -1.3343 3.4680 40 1 -1.7571 -2.0547 7.7595 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330736310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:46:14 Heat of formation + Delta-G solvation = -60.194164 kcal Electronic energy + Delta-G solvation = -28017.860445 eV Core-core repulsion = 23963.030310 eV Total energy + Delta-G solvation = -4054.830135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.23421 -40.74894 -38.49173 -37.09179 -36.97242 -36.28617 -36.06246 -34.69895 -33.71454 -30.93968 -29.81048 -28.98197 -28.04519 -26.88942 -25.11699 -24.48787 -21.75896 -21.11259 -20.67725 -19.52273 -19.00663 -18.90383 -18.59606 -17.46673 -17.42252 -17.20970 -16.32553 -16.22067 -16.00430 -15.42258 -15.31874 -14.78482 -14.58340 -14.47069 -14.33871 -14.14060 -13.78607 -13.63498 -13.56713 -13.39871 -13.35858 -13.21294 -13.11790 -13.08071 -12.83321 -12.72146 -12.59647 -12.35461 -12.27293 -12.20725 -12.10247 -11.61348 -11.02347 -10.89768 -10.72621 -10.22622 -9.69533 -8.33399 -5.99180 -0.78086 -0.07836 0.66836 1.35157 1.42139 1.54082 1.72572 1.92178 1.95185 2.27598 2.55271 2.76685 3.01173 3.09005 3.12967 3.28060 3.64775 3.79736 3.92248 4.04298 4.17022 4.33029 4.35599 4.49827 4.53479 4.55927 4.63932 4.75672 4.90846 4.99263 4.99964 5.03793 5.13508 5.28800 5.45442 5.47094 5.88916 6.09651 6.45584 6.91614 7.14655 7.43817 7.96768 8.67717 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.004195 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.262171 B = 6673.610322 C = 6979.977462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.102 3.898 3 N -0.388 5.388 4 O 0.090 5.910 5 C 0.123 3.877 6 C -0.107 4.107 7 C -0.820 4.820 8 S 2.751 3.249 9 O -0.963 6.963 10 O -0.953 6.953 11 N -1.089 6.089 12 C 0.152 3.848 13 H 0.108 0.892 14 C -0.174 4.174 15 C 0.432 3.568 16 O -0.619 6.619 17 N -0.453 5.453 18 C 0.111 3.889 19 C -0.343 4.343 20 H 0.072 0.928 21 C 0.003 3.997 22 N -0.891 5.891 23 Si 0.985 3.015 24 H -0.276 1.276 25 H -0.268 1.268 26 H -0.276 1.276 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.427 0.573 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 1.829 -13.950 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.060 4.060 3 N -0.099 5.099 4 O 0.035 5.965 5 C 0.057 3.943 6 C -0.164 4.164 7 C -0.908 4.908 8 S 2.835 3.165 9 O -0.953 6.953 10 O -0.943 6.943 11 N -0.851 5.851 12 C 0.040 3.960 13 H 0.126 0.874 14 C -0.233 4.233 15 C 0.220 3.780 16 O -0.506 6.506 17 N -0.172 5.172 18 C -0.031 4.031 19 C -0.471 4.471 20 H 0.090 0.910 21 C -0.200 4.200 22 N -0.529 5.529 23 Si 0.809 3.191 24 H -0.201 1.201 25 H -0.193 1.193 26 H -0.201 1.201 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.123 0.877 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.226 2.690 -14.490 14.905 hybrid contribution 0.621 -0.047 1.654 1.767 sum 2.847 2.643 -12.836 13.411 Atomic orbital electron populations 1.20902 0.83311 1.07145 1.05738 1.23604 1.00058 0.85831 0.96520 1.73796 0.89322 1.24332 1.22456 1.84815 1.22036 1.22999 1.66686 1.25175 0.98153 0.83576 0.87446 1.21160 0.88469 0.99080 1.07669 1.33023 1.00900 1.26820 1.30045 1.00307 0.73350 0.71353 0.71461 1.93566 1.54879 1.70540 1.76352 1.93536 1.38167 1.85892 1.76722 1.55249 1.45213 1.54776 1.29823 1.20483 0.88458 0.98513 0.88508 0.87413 1.22505 0.95940 0.99785 1.05073 1.20834 0.87007 0.82126 0.88046 1.90465 1.21100 1.55367 1.83698 1.43744 1.13514 1.52001 1.07911 1.21750 0.82803 1.00423 0.98171 1.19613 0.93282 1.51065 0.83133 0.91014 1.25994 0.95543 0.95929 1.02523 1.70031 1.03523 1.46003 1.33342 0.85000 0.78243 0.78272 0.77581 1.20068 1.19265 1.20105 0.88093 0.87938 0.86620 0.84834 0.86046 0.87732 0.73614 0.92246 0.89250 0.88493 0.91962 0.92960 0.91187 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 9.77 71.24 0.70 -1.81 16 2 C 0.10 2.85 7.30 43.58 0.32 3.17 16 3 N -0.39 -11.70 12.07 -49.56 -0.60 -12.29 16 4 O 0.09 2.49 11.20 71.64 0.80 3.29 16 5 C 0.12 3.08 7.48 25.04 0.19 3.26 16 6 C -0.11 -1.85 9.65 71.23 0.69 -1.16 16 7 C -0.82 -22.40 6.20 22.40 0.14 -22.26 16 8 S 2.75 74.00 5.73 -56.49 -0.32 73.68 16 9 O -0.96 -27.31 16.19 -128.00 -2.07 -29.38 16 10 O -0.95 -26.70 15.10 -128.00 -1.93 -28.63 16 11 N -1.09 -32.37 5.26 -172.52 -0.91 -33.28 16 12 C 0.15 5.00 2.37 44.24 0.11 5.10 16 13 H 0.11 3.12 5.90 -2.39 -0.01 3.11 16 14 C -0.17 -5.07 9.13 71.98 0.66 -4.41 16 15 C 0.43 19.49 7.09 87.66 0.62 20.11 16 16 O -0.62 -32.07 15.68 -3.06 -0.05 -32.12 16 17 N -0.45 -21.83 3.02 -658.91 -1.99 -23.82 16 18 C 0.11 4.47 7.05 127.77 0.90 5.38 16 19 C -0.34 -18.59 9.28 84.04 0.78 -17.81 16 20 H 0.07 4.19 7.41 -2.91 -0.02 4.17 16 21 C 0.00 0.13 5.13 84.93 0.44 0.57 16 22 N -0.89 -44.61 10.61 21.66 0.23 -44.38 16 23 Si 0.98 41.06 29.57 68.60 2.03 43.09 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 26 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 27 H 0.10 2.01 7.49 -2.38 -0.02 1.99 16 28 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.12 2.43 6.11 -2.39 -0.01 2.42 16 30 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 1.97 7.08 -2.39 -0.02 1.95 16 33 H 0.43 12.75 8.21 -96.75 -0.79 11.95 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 2.59 4.62 -2.38 -0.01 2.57 16 36 H 0.10 2.36 7.64 -2.39 -0.02 2.34 16 37 H 0.06 2.57 6.49 -2.39 -0.02 2.55 16 38 H 0.05 2.26 7.13 -2.38 -0.02 2.24 16 39 H 0.07 2.17 5.79 -2.38 -0.01 2.15 16 40 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 Total: -1.00 -69.82 340.95 1.04 -68.79 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.32 Total: 24.91 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.53 Total: -9.85 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.26 Total: -113.78 kcal Atomic # 8 Polarization: -83.59 SS G_CDS: -3.25 Total: -86.84 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 74.00 SS G_CDS: -0.32 Total: 73.68 kcal Total: -69.82 1.04 -68.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330736310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.594 kcal (2) G-P(sol) polarization free energy of solvation -69.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds